Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 C 1.53002 * 109.47568 * 119.99716 * 2 1 3 5 5 H 1.09001 * 109.47086 * 300.00689 * 4 2 1 6 6 C 1.52997 * 109.47568 * 179.97438 * 4 2 1 7 7 C 1.50710 * 109.46617 * 60.00141 * 4 2 1 8 8 O 1.21278 * 119.99816 * 16.80303 * 7 4 2 9 9 N 1.34775 * 119.99923 * 196.79995 * 7 4 2 10 10 C 1.46926 * 120.62869 * 174.23877 * 9 7 4 11 11 C 1.53192 * 108.76925 * 233.60569 * 10 9 7 12 12 C 1.53043 * 109.31710 * 305.36552 * 11 10 9 13 13 C 1.53033 * 109.53708 * 61.36501 * 12 11 10 14 14 H 1.08999 * 109.50134 * 58.58956 * 13 12 11 15 15 N 1.46495 * 109.49771 * 178.68640 * 13 12 11 16 16 C 1.46502 * 120.00274 * 59.99963 * 15 13 12 17 17 C 1.36942 * 120.00124 * 240.00422 * 15 13 12 18 18 H 1.08000 * 120.00171 * 19.11956 * 17 15 13 19 19 C 1.38814 * 120.00030 * 199.12726 * 17 15 13 20 20 N 1.31622 * 120.00153 * 15.52702 * 19 17 15 21 21 Si 1.86797 * 119.99922 * 195.52471 * 19 17 15 22 22 H 1.48497 * 109.47102 * 59.99932 * 21 19 17 23 23 H 1.48499 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47084 * 299.99754 * 21 19 17 25 25 C 1.46928 * 120.63121 * 354.23522 * 9 7 4 26 26 H 1.09001 * 109.46997 * 299.99613 * 1 2 3 27 27 H 1.08991 * 109.47166 * 60.00282 * 1 2 3 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47479 * 240.00165 * 2 1 3 30 30 H 1.08991 * 109.47011 * 299.99812 * 3 2 1 31 31 H 1.09001 * 109.47010 * 60.00395 * 3 2 1 32 32 H 1.09007 * 109.46931 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46896 * 63.90511 * 6 4 2 34 34 H 1.08995 * 109.47462 * 183.90201 * 6 4 2 35 35 H 1.09002 * 109.47089 * 303.90699 * 6 4 2 36 36 H 1.09004 * 109.58479 * 113.82551 * 10 9 7 37 37 H 1.08995 * 109.70310 * 353.46191 * 10 9 7 38 38 H 1.09000 * 109.49404 * 185.41391 * 11 10 9 39 39 H 1.08998 * 109.52574 * 65.33623 * 11 10 9 40 40 H 1.09006 * 109.45725 * 301.34387 * 12 11 10 41 41 H 1.08999 * 109.46247 * 181.39165 * 12 11 10 42 42 H 1.09007 * 109.46965 * 94.92805 * 16 15 13 43 43 H 1.08995 * 109.47280 * 214.92911 * 16 15 13 44 44 H 1.09000 * 109.47186 * 334.93045 * 16 15 13 45 45 H 0.96991 * 119.99968 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58579 * 6.60352 * 25 9 7 47 47 H 1.08997 * 109.58709 * 246.18229 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5701 -0.7217 1.2489 7 6 1.5377 -2.1421 1.2492 8 8 1.1095 -2.6338 0.2267 9 7 1.5645 -2.8663 2.3856 10 6 0.9643 -4.2065 2.4333 11 6 -0.0289 -4.2606 3.5984 12 6 0.6808 -3.8433 4.8885 13 6 1.1874 -2.4057 4.7520 14 1 0.3477 -1.7422 4.5450 15 7 1.8391 -1.9965 5.9986 16 6 3.0029 -2.7358 6.4938 17 6 1.3603 -0.9228 6.7010 18 1 0.3540 -0.5705 6.5294 19 6 2.1686 -0.2873 7.6336 20 7 3.4672 -0.5020 7.6340 21 14 1.4133 0.8725 8.8880 22 1 0.4255 0.1330 9.7141 23 1 2.4814 1.4186 9.7634 24 1 0.7327 1.9886 8.1834 25 6 2.1944 -2.3306 3.6001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 3.9337 0.3034 1.3186 34 1 3.9334 -1.2949 2.1019 35 1 3.9330 -1.1741 0.3260 36 1 1.7455 -4.9515 2.5843 37 1 0.4420 -4.4088 1.4983 38 1 -0.4098 -5.2763 3.7049 39 1 -0.8575 -3.5800 3.4026 40 1 1.5240 -4.5097 5.0709 41 1 -0.0173 -3.9047 5.7233 42 1 3.9157 -2.2435 6.1583 43 1 2.9819 -2.7590 7.5833 44 1 2.9769 -3.7549 6.1081 45 1 4.0320 -0.0576 8.2854 46 1 2.4834 -1.2927 3.4344 47 1 3.0759 -2.9226 3.8461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027604101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = -44.822951 kcal Electronic energy + Delta-G solvation = -24228.855875 eV Core-core repulsion = 21025.078091 eV Total energy + Delta-G solvation = -3203.777784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54894 -39.19180 -37.22555 -36.50893 -34.02086 -33.22389 -31.48716 -30.27761 -28.20615 -28.01330 -26.63759 -25.22817 -24.88669 -23.10678 -21.62722 -20.59869 -19.73836 -18.73590 -18.20053 -17.14574 -16.88385 -16.17705 -15.74233 -15.54551 -15.41600 -15.34424 -15.08566 -14.64012 -14.37602 -14.21496 -13.78839 -13.64785 -13.50995 -13.21009 -13.09468 -12.95241 -12.83954 -12.76159 -12.46682 -12.43381 -12.18911 -12.17055 -12.08518 -11.90089 -11.76892 -11.59951 -11.57658 -11.47685 -11.37819 -10.63696 -10.51995 -9.65680 -8.76323 -7.80562 -5.24598 1.48534 1.50581 1.56535 1.62394 2.03096 2.53280 3.32573 3.40690 3.68776 3.77606 3.90719 3.97637 4.03304 4.14248 4.22846 4.28678 4.37908 4.41673 4.53461 4.58815 4.60998 4.69380 4.79864 4.80152 4.84457 4.89999 4.91799 4.99169 5.00827 5.02888 5.07725 5.10262 5.15862 5.27564 5.31602 5.39788 5.45650 5.50296 5.52615 5.60505 5.65920 5.76240 6.31919 6.43367 7.16990 7.18821 7.89703 8.31584 9.22127 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.005675 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.202929 B = 4933.154304 C = 5910.861305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C -0.145 4.145 4 C -0.107 4.107 5 H 0.088 0.912 6 C -0.141 4.141 7 C 0.520 3.480 8 O -0.575 6.575 9 N -0.607 5.607 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.124 4.124 13 C 0.165 3.835 14 H 0.052 0.948 15 N -0.605 5.605 16 C 0.178 3.822 17 C -0.262 4.262 18 H 0.068 0.932 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.961 3.039 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.277 1.277 25 C 0.106 3.894 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.006 0.994 43 H 0.015 0.985 44 H 0.031 0.969 45 H 0.248 0.752 46 H 0.080 0.920 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 -2.741 -12.221 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.202 4.202 4 C -0.129 4.129 5 H 0.106 0.894 6 C -0.198 4.198 7 C 0.310 3.690 8 O -0.455 6.455 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.157 4.157 12 C -0.163 4.163 13 C 0.057 3.943 14 H 0.070 0.930 15 N -0.327 5.327 16 C 0.033 3.967 17 C -0.392 4.392 18 H 0.086 0.914 19 C -0.242 4.242 20 N -0.580 5.580 21 Si 0.789 3.211 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.019 4.019 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.926 -2.939 -12.620 13.284 hybrid contribution -0.093 0.661 1.181 1.357 sum -3.019 -2.277 -11.439 12.048 Atomic orbital electron populations 1.21878 0.95362 1.01510 1.01861 1.20890 0.95863 0.96427 0.95902 1.21883 1.01709 0.94258 1.02360 1.21440 0.98451 0.91792 1.01179 0.89368 1.21829 0.91882 1.03872 1.02254 1.20982 0.77167 0.88533 0.82303 1.90592 1.49131 1.73215 1.32598 1.48294 1.57045 1.17728 1.10828 1.21678 0.96693 0.83102 0.99764 1.21823 0.97531 1.02886 0.93423 1.21942 1.00064 0.96854 0.97481 1.20765 0.93720 0.95054 0.84798 0.92986 1.44098 1.34000 1.32514 1.22135 1.20517 0.88525 0.91194 0.96440 1.19471 0.96037 1.06932 1.16756 0.91385 1.25575 0.95404 1.00549 1.02672 1.70220 1.03385 1.47039 1.37361 0.85443 0.77124 0.79059 0.79429 1.20861 1.22157 1.20308 1.22372 0.96217 0.99487 0.83786 0.93159 0.91432 0.93678 0.91203 0.91324 0.92749 0.91509 0.89710 0.92787 0.91797 0.90668 0.89671 0.88413 0.92406 0.91912 0.92568 0.97576 0.96584 0.95072 0.94284 0.90157 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.89 71.98 0.64 -3.09 16 2 C -0.07 -1.75 2.12 -10.79 -0.02 -1.78 16 3 C -0.14 -2.86 8.84 71.98 0.64 -2.23 16 4 C -0.11 -2.94 1.46 -11.54 -0.02 -2.95 16 5 H 0.09 2.58 7.03 -2.39 -0.02 2.57 16 6 C -0.14 -3.46 8.35 71.98 0.60 -2.86 16 7 C 0.52 16.38 6.28 87.66 0.55 16.93 16 8 O -0.57 -20.45 13.93 -3.02 -0.04 -20.49 16 9 N -0.61 -18.47 2.97 -818.90 -2.43 -20.90 16 10 C 0.11 2.90 6.41 86.36 0.55 3.45 16 11 C -0.12 -2.96 6.08 30.67 0.19 -2.77 16 12 C -0.12 -3.86 5.13 30.62 0.16 -3.70 16 13 C 0.16 6.17 2.74 45.07 0.12 6.30 16 14 H 0.05 2.08 7.84 -2.39 -0.02 2.06 16 15 N -0.60 -28.21 2.82 -702.36 -1.98 -30.19 16 16 C 0.18 8.26 7.91 127.77 1.01 9.27 16 17 C -0.26 -13.72 9.63 84.03 0.81 -12.91 16 18 H 0.07 3.50 7.80 -2.91 -0.02 3.48 16 19 C -0.05 -2.50 5.06 84.86 0.43 -2.07 16 20 N -0.93 -52.88 10.63 21.65 0.23 -52.65 16 21 Si 0.96 43.78 29.58 68.60 2.03 45.81 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.11 3.57 4.74 86.36 0.41 3.98 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.33 6.15 -2.39 -0.01 1.31 16 29 H 0.07 1.80 7.92 -2.39 -0.02 1.79 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.20 6.52 -2.38 -0.02 1.19 16 33 H 0.08 1.82 6.65 -2.39 -0.02 1.81 16 34 H 0.05 1.44 6.38 -2.39 -0.02 1.43 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 2.31 7.05 -2.39 -0.02 2.30 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.91 6.72 -2.38 -0.02 1.90 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.01 0.30 7.44 -2.38 -0.02 0.28 16 43 H 0.02 0.80 7.13 -2.39 -0.02 0.79 16 44 H 0.03 1.22 6.46 -2.39 -0.02 1.20 16 45 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 46 H 0.08 2.84 4.82 -2.39 -0.01 2.83 16 47 H 0.06 2.14 7.51 -2.39 -0.02 2.13 16 Total: -1.00 -60.57 349.90 4.79 -55.77 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.92 Total: 17.10 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.07 Total: 5.56 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.18 Total: -103.75 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.04 Total: -20.49 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.57 4.79 -55.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027604101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.951 kcal (2) G-P(sol) polarization free energy of solvation -60.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds