Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 O 1.21283 * 119.99503 * 119.99964 * 4 2 1 6 6 N 1.34773 * 120.00081 * 299.72691 * 4 2 1 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47161 * 179.97438 * 7 6 4 9 9 C 1.53787 * 113.61323 * 274.13297 * 8 7 6 10 10 C 1.53954 * 87.01850 * 220.04937 * 9 8 7 11 11 N 1.46499 * 113.53628 * 270.80971 * 10 9 8 12 12 C 1.36942 * 120.00075 * 252.49759 * 11 10 9 13 13 H 1.08001 * 119.99624 * 0.02562 * 12 11 10 14 14 C 1.38812 * 120.00086 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99912 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99786 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47105 * 60.00493 * 16 14 12 18 18 H 1.48500 * 109.46501 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47267 * 300.00251 * 16 14 12 20 20 C 1.53780 * 113.61308 * 176.52886 * 8 7 6 21 21 C 1.52998 * 109.47322 * 239.99613 * 2 1 3 22 22 C 1.53008 * 109.47007 * 300.00199 * 21 2 1 23 23 C 1.52996 * 109.46929 * 60.00147 * 21 2 1 24 24 C 1.52993 * 109.47254 * 180.02562 * 21 2 1 25 25 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 26 26 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 27 27 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00525 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 30 30 H 1.08998 * 109.47213 * 59.99069 * 7 6 4 31 31 H 1.09000 * 112.85397 * 45.32733 * 8 7 6 32 32 H 1.09000 * 113.61262 * 334.56787 * 9 8 7 33 33 H 1.09003 * 113.61288 * 105.46730 * 9 8 7 34 34 H 1.09003 * 113.73921 * 139.94774 * 10 9 8 35 35 H 0.96996 * 119.99842 * 72.49946 * 11 10 9 36 36 H 0.96997 * 120.00025 * 179.97438 * 15 14 12 37 37 H 1.09002 * 113.61042 * 254.52510 * 20 8 7 38 38 H 1.09000 * 113.61894 * 25.42817 * 20 8 7 39 39 H 1.09004 * 109.46786 * 59.99901 * 22 21 2 40 40 H 1.08995 * 109.46766 * 180.02562 * 22 21 2 41 41 H 1.09002 * 109.47164 * 300.00057 * 22 21 2 42 42 H 1.08994 * 109.47235 * 60.00181 * 23 21 2 43 43 H 1.09005 * 109.46828 * 180.02562 * 23 21 2 44 44 H 1.09000 * 109.47441 * 299.99910 * 23 21 2 45 45 H 1.09002 * 109.47712 * 59.99463 * 24 21 2 46 46 H 1.08995 * 109.47426 * 180.02562 * 24 21 2 47 47 H 1.09002 * 109.47145 * 299.99770 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7111 -0.2466 2.4546 7 6 2.1999 -0.9368 3.6509 8 6 1.6959 -0.2112 4.9000 9 6 2.5959 0.9556 5.3398 10 6 2.3473 0.4961 6.7880 11 7 1.1672 1.1097 7.4020 12 6 1.3184 2.0666 8.3699 13 1 2.3076 2.3691 8.6803 14 6 0.2002 2.6484 8.9514 15 7 -1.0053 2.2801 8.5727 16 14 0.4066 3.9532 10.2722 17 1 1.1622 5.1046 9.7169 18 1 -0.9303 4.4114 10.7282 19 1 1.1517 3.3802 11.4219 20 6 2.0846 -0.9067 6.2153 21 6 2.0400 -0.7213 -1.2492 22 6 1.5300 -2.1639 -1.2491 23 6 1.5301 -0.0001 -2.4984 24 6 3.5700 -0.7219 -1.2488 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.1571 0.5446 2.5436 29 1 1.8328 -1.9632 3.6535 30 1 3.2898 -0.9408 3.6483 31 1 0.6395 0.0507 4.8402 32 1 3.6329 0.8515 5.0206 33 1 2.1792 1.9374 5.1145 34 1 3.2313 0.5499 7.4233 35 1 0.2788 0.8383 7.1230 36 1 -1.7866 2.6864 8.9793 37 1 1.2557 -1.4263 6.6959 38 1 2.9816 -1.5210 6.1360 39 1 0.4399 -2.1638 -1.2491 40 1 1.8937 -2.6778 -2.1388 41 1 1.8932 -2.6777 -0.3590 42 1 1.8934 1.0275 -2.4985 43 1 1.8931 -0.5143 -3.3884 44 1 0.4401 -0.0001 -2.4985 45 1 3.9330 -1.2358 -0.3588 46 1 3.9333 -1.2353 -2.1389 47 1 3.9337 0.3057 -1.2487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100448206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = -26.913237 kcal Electronic energy + Delta-G solvation = -22703.920169 eV Core-core repulsion = 19500.919008 eV Total energy + Delta-G solvation = -3203.001161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51422 -38.73662 -36.96690 -34.66641 -33.27137 -31.42218 -30.04848 -27.75450 -27.37028 -26.99747 -25.07350 -24.49375 -23.61944 -21.77010 -20.68104 -18.95159 -18.29366 -17.34296 -16.85292 -16.06367 -15.51344 -15.12547 -14.80080 -14.52321 -14.31746 -14.18769 -13.79747 -13.72025 -13.34040 -12.89236 -12.50974 -12.36158 -12.35265 -12.19850 -11.96189 -11.92677 -11.72711 -11.50984 -11.22772 -11.11515 -11.05566 -10.83927 -10.68658 -10.62128 -10.48343 -10.22149 -9.99612 -9.70864 -9.56452 -9.29079 -8.93413 -8.87472 -7.02392 -5.82868 -3.11967 2.66373 3.24280 3.40874 3.45439 3.46297 4.39707 4.53860 4.60737 4.62652 4.96926 5.04840 5.08354 5.10781 5.17626 5.22367 5.29402 5.43420 5.47737 5.53947 5.59509 5.61606 5.64553 5.70589 5.74680 5.80748 5.81853 5.86312 5.94646 5.98679 6.03535 6.10345 6.14875 6.20153 6.35048 6.36047 6.39872 6.55034 6.62937 6.73059 6.89533 7.02833 7.56960 7.66454 8.29077 8.36440 9.46978 10.04513 10.38762 11.39540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.002890 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.426313 B = 9687.200411 C =10064.136105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.516 3.484 5 O -0.537 6.537 6 N -0.724 5.724 7 C 0.131 3.869 8 C -0.119 4.119 9 C -0.168 4.168 10 C 0.167 3.833 11 N -0.706 5.706 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.933 5.933 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.148 4.148 21 C -0.046 4.046 22 C -0.155 4.155 23 C -0.144 4.144 24 C -0.154 4.154 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.401 0.599 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.049 0.951 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -5.656 -19.943 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 H 0.112 0.888 4 C 0.302 3.698 5 O -0.416 6.416 6 N -0.375 5.375 7 C 0.008 3.992 8 C -0.138 4.138 9 C -0.209 4.209 10 C 0.055 3.945 11 N -0.344 5.344 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.188 4.188 21 C -0.046 4.046 22 C -0.212 4.212 23 C -0.201 4.201 24 C -0.211 4.211 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.068 0.932 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.085 -6.231 -19.834 21.403 hybrid contribution -0.581 1.145 0.581 1.410 sum 4.504 -5.086 -19.253 20.416 Atomic orbital electron populations 1.21910 0.93052 1.02990 1.02745 1.21384 0.97466 1.00515 0.93110 0.88767 1.20602 0.79978 0.84585 0.84599 1.90553 1.38049 1.26566 1.86398 1.46139 1.53714 1.31833 1.05783 1.21450 0.98840 0.95838 0.83093 1.22700 1.00417 0.98041 0.92647 1.23911 0.97760 0.97747 1.01528 1.21091 0.91637 0.90556 0.91211 1.42166 1.02650 1.45367 1.44252 1.19249 0.92727 1.13034 1.12405 0.91050 1.24763 0.95205 1.00486 1.00396 1.69648 0.96846 1.45911 1.45709 0.86242 0.76563 0.81548 0.81684 1.21210 1.21669 1.21182 1.23438 1.01190 0.98689 0.95452 1.20259 0.96093 0.95639 0.92625 1.22160 1.00168 0.95482 1.03365 1.21964 1.01091 1.00065 0.97012 1.22114 0.94217 1.01323 1.03455 0.92047 0.91211 0.91703 0.76453 0.91973 0.91712 0.88984 0.91460 0.91551 0.91988 0.78120 0.93375 0.91352 0.90493 0.93250 0.93338 0.89754 0.92767 0.92581 0.92362 0.89709 0.93205 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.39 37.16 0.31 -0.91 16 2 C -0.10 -0.98 2.10 -91.77 -0.19 -1.17 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.52 6.31 6.56 -10.98 -0.07 6.24 16 5 O -0.54 -8.03 11.35 5.56 0.06 -7.97 16 6 N -0.72 -8.58 5.45 -60.29 -0.33 -8.91 16 7 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 8 C -0.12 -1.75 3.62 -89.81 -0.33 -2.08 16 9 C -0.17 -2.76 7.44 -25.82 -0.19 -2.96 16 10 C 0.17 3.23 4.57 -67.03 -0.31 2.92 16 11 N -0.71 -17.23 5.31 -52.55 -0.28 -17.51 16 12 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 13 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 16 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 21 C -0.05 -0.43 0.54 -154.51 -0.08 -0.52 16 22 C -0.15 -1.58 7.82 37.16 0.29 -1.29 16 23 C -0.14 -1.10 8.12 37.16 0.30 -0.80 16 24 C -0.15 -1.59 8.18 37.15 0.30 -1.29 16 25 H 0.06 0.48 7.58 -51.93 -0.39 0.09 16 26 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 27 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 28 H 0.40 4.21 7.91 -40.82 -0.32 3.89 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.38 9.92 7.90 -40.82 -0.32 9.60 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.05 0.46 6.43 -51.93 -0.33 0.12 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 1.07 5.51 -51.93 -0.29 0.78 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 45 H 0.08 1.08 5.51 -51.93 -0.29 0.79 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -29.95 361.42 -8.20 -38.15 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.38 Total: 10.60 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.42 Total: -9.91 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.12 Total: -53.32 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.06 Total: -7.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.95 -8.20 -38.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100448206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.236 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds