Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 C 1.53780 * 113.61687 * 274.13701 * 8 7 6 10 10 C 1.53948 * 87.02300 * 220.04810 * 9 8 7 11 11 N 1.46503 * 113.53412 * 270.80920 * 10 9 8 12 12 C 1.36930 * 120.00156 * 252.49061 * 11 10 9 13 13 H 1.08009 * 120.00226 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00345 * 180.02562 * 12 11 10 15 15 N 1.31618 * 119.99957 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00340 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47348 * 59.99860 * 16 14 12 18 18 H 1.48503 * 109.47240 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47162 * 299.99856 * 16 14 12 20 20 C 1.53779 * 87.11128 * 25.36320 * 10 9 8 21 21 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 22 22 C 1.53006 * 109.47127 * 60.00361 * 21 2 1 23 23 C 1.52999 * 109.47317 * 179.97438 * 21 2 1 24 24 C 1.52992 * 109.47482 * 300.00014 * 21 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00011 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 30 30 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 31 31 H 1.09006 * 112.85174 * 45.33110 * 8 7 6 32 32 H 1.09005 * 113.61289 * 334.57270 * 9 8 7 33 33 H 1.09001 * 113.61411 * 105.46640 * 9 8 7 34 34 H 1.09003 * 113.74206 * 139.94479 * 10 9 8 35 35 H 0.96998 * 120.00008 * 72.49975 * 11 10 9 36 36 H 0.97000 * 120.00643 * 180.02562 * 15 14 12 37 37 H 1.09002 * 113.61029 * 220.09454 * 20 10 9 38 38 H 1.08996 * 113.61725 * 89.19019 * 20 10 9 39 39 H 1.08993 * 109.46955 * 60.00011 * 22 21 2 40 40 H 1.09000 * 109.47050 * 179.97438 * 22 21 2 41 41 H 1.09001 * 109.47002 * 299.99574 * 22 21 2 42 42 H 1.09002 * 109.46716 * 60.00091 * 23 21 2 43 43 H 1.09000 * 109.47486 * 180.02562 * 23 21 2 44 44 H 1.09001 * 109.47362 * 300.00732 * 23 21 2 45 45 H 1.09001 * 109.47066 * 60.00169 * 24 21 2 46 46 H 1.08996 * 109.47747 * 179.97438 * 24 21 2 47 47 H 1.09002 * 109.47103 * 300.00247 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1948 -0.9409 -3.6507 8 6 1.6854 -0.2193 -4.8999 9 6 0.2844 -0.6715 -5.3444 10 6 0.8048 -0.5901 -6.7909 11 7 0.6274 0.7290 -7.4031 12 6 -0.3215 0.9116 -8.3733 13 1 -0.9395 0.0832 -8.6870 14 6 -0.4892 2.1613 -8.9537 15 7 0.2635 3.1710 -8.5712 16 14 -1.7842 2.4106 -10.2767 17 1 -3.1246 2.0888 -9.7243 18 1 -1.7628 3.8244 -10.7303 19 1 -1.4952 1.5167 -11.4269 20 6 2.2124 -0.8177 -6.2149 21 6 2.0399 -0.7212 1.2493 22 6 1.5300 -2.1638 1.2492 23 6 3.5699 -0.7218 1.2491 24 6 1.5300 0.0000 2.4984 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.1494 0.5388 -2.5436 29 1 3.2848 -0.9414 -3.6508 30 1 1.8310 -1.9685 -3.6505 31 1 1.7955 0.8634 -4.8378 32 1 0.0312 -1.6833 -5.0277 33 1 -0.4995 0.0519 -5.1200 34 1 0.4574 -1.4029 -7.4287 35 1 1.1823 1.4731 -7.1213 36 1 0.1461 4.0444 -8.9764 37 1 2.9827 -0.2121 -6.6924 38 1 2.4874 -1.8695 -6.1367 39 1 1.8934 -2.6776 0.3593 40 1 1.8936 -2.6777 2.1390 41 1 0.4399 -2.1638 1.2492 42 1 3.9336 0.3057 1.2488 43 1 3.9332 -1.2360 2.1388 44 1 3.9330 -1.2359 0.3591 45 1 0.4400 0.0000 2.4984 46 1 1.8928 -0.5140 3.3885 47 1 1.8933 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100448207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -26.882348 kcal Electronic energy + Delta-G solvation = -22721.187692 eV Core-core repulsion = 19518.187871 eV Total energy + Delta-G solvation = -3202.999821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51471 -38.73644 -36.96676 -34.66711 -33.27182 -31.42105 -30.04824 -27.75163 -27.36903 -26.99770 -25.07582 -24.49152 -23.62029 -21.76885 -20.68224 -18.95774 -18.27084 -17.34758 -16.87944 -16.07642 -15.47090 -15.00801 -14.91204 -14.55525 -14.36217 -14.17194 -13.81374 -13.62220 -13.35016 -12.89862 -12.60138 -12.35132 -12.26251 -12.21172 -11.96403 -11.93378 -11.70805 -11.53299 -11.21627 -11.11786 -11.05644 -10.84125 -10.68395 -10.62009 -10.48348 -10.22137 -9.99644 -9.70837 -9.56237 -9.29347 -8.93544 -8.87262 -7.02414 -5.82817 -3.11942 2.66280 3.24436 3.40844 3.45424 3.46276 4.39831 4.53857 4.60499 4.62954 4.96659 5.05459 5.08351 5.11414 5.17533 5.22172 5.29397 5.43444 5.47789 5.54268 5.59593 5.62592 5.63766 5.70902 5.74449 5.81015 5.81962 5.86426 5.94623 5.98998 6.03482 6.10354 6.15021 6.20116 6.35069 6.36063 6.39933 6.55032 6.62974 6.73035 6.89546 7.02834 7.56953 7.66376 8.29086 8.36408 9.46969 10.04531 10.38776 11.39577 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.002900 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.888470 B = 9652.800115 C =10030.348765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.516 3.484 5 O -0.537 6.537 6 N -0.724 5.724 7 C 0.131 3.869 8 C -0.119 4.119 9 C -0.168 4.168 10 C 0.167 3.833 11 N -0.706 5.706 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.933 5.933 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.148 4.148 21 C -0.046 4.046 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.401 0.599 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 -6.813 19.942 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 H 0.112 0.888 4 C 0.302 3.698 5 O -0.416 6.416 6 N -0.375 5.375 7 C 0.008 3.992 8 C -0.138 4.138 9 C -0.209 4.209 10 C 0.055 3.945 11 N -0.344 5.344 12 C -0.374 4.374 13 H 0.089 0.911 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.188 4.188 21 C -0.046 4.046 22 C -0.212 4.212 23 C -0.211 4.211 24 C -0.201 4.201 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.275 -7.500 19.833 21.455 hybrid contribution -0.794 0.994 -0.583 1.399 sum 2.481 -6.506 19.250 20.471 Atomic orbital electron populations 1.21908 0.93026 1.03005 1.02742 1.21384 0.97479 1.00501 0.93107 0.88784 1.20604 0.79975 0.84589 0.84600 1.90553 1.38112 1.26501 1.86396 1.46138 1.53444 1.32107 1.05781 1.21449 0.98664 0.96010 0.83098 1.22702 0.98409 1.00066 0.92638 1.23905 0.95552 0.99949 1.01502 1.21091 0.92400 0.89772 0.91235 1.42164 1.42626 1.05542 1.44100 1.19246 1.10979 0.94927 1.12258 0.91051 1.24761 0.99808 0.95896 1.00388 1.69647 1.41861 1.00941 1.45669 0.86244 0.81292 0.76807 0.81696 1.21215 1.21670 1.21179 1.23438 0.99704 1.00180 0.95453 1.20259 0.96088 0.95644 0.92627 1.22158 1.00177 0.95480 1.03358 1.22116 0.94221 1.01310 1.03466 1.21963 1.01096 1.00059 0.97011 0.91226 0.92024 0.91702 0.76453 0.91982 0.91706 0.88988 0.91464 0.91552 0.91991 0.78119 0.93373 0.91355 0.90494 0.89757 0.93341 0.93245 0.93641 0.93202 0.89714 0.92362 0.92581 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.38 37.16 0.31 -0.91 16 2 C -0.10 -0.98 2.10 -91.77 -0.19 -1.17 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.52 6.31 6.57 -10.98 -0.07 6.24 16 5 O -0.54 -8.03 11.34 5.56 0.06 -7.97 16 6 N -0.72 -8.58 5.45 -60.30 -0.33 -8.90 16 7 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 8 C -0.12 -1.75 3.62 -89.81 -0.33 -2.08 16 9 C -0.17 -2.75 7.44 -25.83 -0.19 -2.94 16 10 C 0.17 3.23 4.57 -67.03 -0.31 2.92 16 11 N -0.71 -17.22 5.31 -52.55 -0.28 -17.50 16 12 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 13 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 16 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 21 C -0.05 -0.43 0.54 -154.51 -0.08 -0.52 16 22 C -0.15 -1.58 7.82 37.16 0.29 -1.29 16 23 C -0.15 -1.59 8.18 37.16 0.30 -1.28 16 24 C -0.14 -1.10 8.12 37.15 0.30 -0.80 16 25 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 26 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 27 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 28 H 0.40 4.21 7.89 -40.82 -0.32 3.89 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.38 9.92 7.90 -40.82 -0.32 9.60 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.08 1.07 5.51 -51.93 -0.29 0.78 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.46 6.43 -51.93 -0.33 0.13 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.08 5.51 -51.93 -0.29 0.79 16 45 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -29.94 361.38 -8.20 -38.14 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -8.38 Total: 10.61 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.42 Total: -9.90 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.12 Total: -53.32 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.06 Total: -7.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.94 -8.20 -38.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100448207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.258 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds