Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.52994 * 109.47356 * 120.00520 * 2 1 3 5 5 C 1.52997 * 109.47404 * 174.99986 * 4 2 1 6 6 H 1.09002 * 109.47153 * 54.99686 * 5 4 2 7 7 C 1.53002 * 109.46817 * 294.99916 * 5 4 2 8 8 C 1.50701 * 109.47212 * 174.99684 * 5 4 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 5 4 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 5 4 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 5 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 C 1.53780 * 113.61687 * 274.13701 * 12 11 10 14 14 C 1.53948 * 87.02300 * 220.04810 * 13 12 11 15 15 N 1.46503 * 113.53412 * 270.80920 * 14 13 12 16 16 C 1.36930 * 120.00156 * 252.49061 * 15 14 13 17 17 H 1.08009 * 120.00226 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00345 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00340 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47289 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47593 * 119.99718 * 20 18 16 23 23 H 1.48497 * 109.47254 * 239.99683 * 20 18 16 24 24 C 1.53779 * 87.11128 * 25.36320 * 14 13 12 25 25 H 1.08994 * 109.47345 * 299.99908 * 1 2 3 26 26 H 1.09006 * 109.47459 * 59.99551 * 1 2 3 27 27 H 1.09006 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46936 * 240.00470 * 2 1 3 29 29 H 1.09002 * 109.46802 * 300.00618 * 3 2 1 30 30 H 1.09004 * 109.46786 * 59.99824 * 3 2 1 31 31 H 1.08993 * 109.47103 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47017 * 54.99628 * 4 2 1 33 33 H 1.09008 * 109.46970 * 294.99937 * 4 2 1 34 34 H 1.09000 * 109.46986 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.47075 * 299.99262 * 7 5 4 36 36 H 1.08996 * 109.47407 * 60.00219 * 7 5 4 37 37 H 0.96995 * 120.00011 * 0.02562 * 10 8 5 38 38 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 39 39 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 40 40 H 1.09006 * 112.85174 * 45.33110 * 12 11 10 41 41 H 1.09005 * 113.61289 * 334.57270 * 13 12 11 42 42 H 1.09001 * 113.61411 * 105.46640 * 13 12 11 43 43 H 1.09003 * 113.74206 * 139.94479 * 14 13 12 44 44 H 0.96998 * 120.00008 * 72.49975 * 15 14 13 45 45 H 0.97000 * 120.00643 * 180.02562 * 19 18 16 46 46 H 1.09002 * 113.61029 * 220.09454 * 24 14 13 47 47 H 1.08996 * 113.61725 * 89.19019 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9954 0.1611 1.0526 7 6 3.9649 -1.7252 0.0124 8 6 4.0774 -1.4304 2.4721 9 8 3.2995 -1.7396 3.3497 10 7 5.4000 -1.6235 2.6448 11 6 5.8981 -2.2066 3.8931 12 6 7.4229 -2.3163 3.8318 13 6 7.9213 -3.6061 3.1590 14 6 9.0111 -3.6563 4.2451 15 7 10.2334 -2.9354 3.8811 16 6 11.3688 -3.6306 3.5609 17 1 11.3632 -4.7106 3.5762 18 6 12.5271 -2.9476 3.2165 19 7 12.5340 -1.6316 3.1973 20 14 14.0758 -3.8960 2.7790 21 1 13.8075 -5.3534 2.8753 22 1 14.4879 -3.5588 1.3927 23 1 15.1633 -3.5300 3.7215 24 6 8.0556 -2.8405 5.1318 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 5.0512 -1.8031 -0.0315 35 1 3.5344 -2.7174 0.1477 36 1 3.5942 -1.2917 -0.9164 37 1 6.0220 -1.3765 1.9428 38 1 5.6134 -1.5698 4.7306 39 1 5.4673 -3.1987 4.0280 40 1 7.8973 -1.4127 3.4488 41 1 7.2105 -4.4306 3.2151 42 1 8.3125 -3.4510 2.1535 43 1 9.2081 -4.6596 4.6232 44 1 10.2385 -1.9655 3.8671 45 1 13.3432 -1.1541 2.9563 46 1 8.5551 -2.0681 5.7166 47 1 7.3816 -3.4552 5.7284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100795586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = -40.426927 kcal Electronic energy + Delta-G solvation = -22167.167787 eV Core-core repulsion = 18963.580629 eV Total energy + Delta-G solvation = -3203.587158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09238 -38.62693 -37.07423 -34.63321 -33.33482 -32.73521 -30.15034 -27.47844 -27.44536 -26.82784 -25.07293 -24.11129 -23.31861 -21.64013 -20.46191 -19.53830 -18.36202 -17.43198 -16.97523 -16.19038 -15.74980 -15.09606 -15.01819 -14.58372 -14.24462 -14.02482 -13.75837 -13.70133 -13.28512 -13.11181 -12.90260 -12.57330 -12.53400 -12.24866 -12.14268 -11.93175 -11.71945 -11.48211 -11.37205 -11.06587 -10.95144 -10.87753 -10.76887 -10.71593 -10.48872 -10.16396 -10.05745 -9.71575 -9.67895 -9.42534 -8.96314 -8.89323 -7.02304 -5.83223 -3.12209 2.67561 3.23699 3.39690 3.45802 3.47836 4.46592 4.48040 4.53678 4.61323 4.80395 4.91882 5.01832 5.05689 5.07155 5.17153 5.25791 5.32706 5.36636 5.43405 5.49502 5.54106 5.62195 5.63446 5.67016 5.70720 5.75334 5.82755 5.87063 5.87829 5.95156 5.97849 6.10902 6.13659 6.20132 6.20510 6.36082 6.46432 6.58949 6.72927 6.89380 7.02888 7.56420 7.67291 8.26645 8.35992 9.46749 10.04341 10.38569 11.39303 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.002682 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.065288 B =10439.103487 C =10956.126274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.114 4.114 6 H 0.098 0.902 7 C -0.146 4.146 8 C 0.513 3.487 9 O -0.548 6.548 10 N -0.724 5.724 11 C 0.130 3.870 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 3.372 -6.263 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.132 4.132 5 C -0.135 4.135 6 H 0.116 0.884 7 C -0.204 4.204 8 C 0.299 3.701 9 O -0.426 6.426 10 N -0.375 5.375 11 C 0.007 3.993 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.188 4.188 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.369 3.016 -5.643 22.307 hybrid contribution 1.223 0.080 -0.623 1.375 sum -20.147 3.095 -6.266 21.325 Atomic orbital electron populations 1.21824 0.95200 1.01737 1.01651 1.21206 0.95780 0.96377 0.98507 1.21918 1.01187 0.95998 1.01720 1.21447 0.92432 1.01416 0.97887 1.21392 0.98048 1.00831 0.93236 0.88386 1.21836 1.01856 0.99608 0.97058 1.20686 0.82247 0.78252 0.88879 1.90677 1.56001 1.51451 1.44430 1.46104 1.07369 1.64111 1.19916 1.21456 0.94030 0.98138 0.85659 1.22704 0.92069 0.99496 0.99543 1.23903 1.00241 0.95596 1.01147 1.21093 0.85974 0.95100 0.92339 1.42180 1.06134 1.05745 1.80386 1.19339 0.88541 0.91094 1.38251 0.90935 1.24767 0.98167 0.95568 1.02451 1.69668 1.27999 1.05434 1.54982 0.86099 0.83415 0.78879 0.77684 1.20489 1.21838 1.21826 1.23439 0.98988 1.00538 0.95809 0.92676 0.92816 0.92698 0.90870 0.92826 0.92644 0.92424 0.91351 0.91144 0.91947 0.92082 0.91257 0.76398 0.91992 0.91719 0.88959 0.91459 0.91538 0.91972 0.78125 0.93485 0.91339 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.10 -0.73 2.78 -90.62 -0.25 -0.99 16 3 C -0.15 -1.04 8.95 37.16 0.33 -0.71 16 4 C -0.09 -0.87 3.50 -26.74 -0.09 -0.97 16 5 C -0.11 -1.06 2.59 -91.77 -0.24 -1.30 16 6 H 0.10 0.80 6.34 -51.93 -0.33 0.47 16 7 C -0.15 -1.17 8.85 37.16 0.33 -0.84 16 8 C 0.51 6.61 7.15 -10.98 -0.08 6.53 16 9 O -0.55 -9.10 15.92 5.56 0.09 -9.01 16 10 N -0.72 -8.83 5.45 -60.30 -0.33 -9.16 16 11 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 12 C -0.12 -1.77 3.62 -89.81 -0.33 -2.10 16 13 C -0.17 -2.76 7.44 -25.83 -0.19 -2.95 16 14 C 0.17 3.23 4.57 -67.03 -0.31 2.93 16 15 N -0.71 -17.23 5.31 -52.55 -0.28 -17.51 16 16 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 6.46 -51.93 -0.34 0.05 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.75 7.96 -51.92 -0.41 0.34 16 34 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.46 6.46 -51.93 -0.34 0.12 16 37 H 0.40 4.25 7.89 -40.82 -0.32 3.93 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.38 9.93 7.90 -40.82 -0.32 9.61 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -30.94 372.24 -8.79 -39.73 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.64 Total: 9.32 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.94 Total: -9.08 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.12 Total: -53.59 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.94 -8.79 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100795586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.700 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds