Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46808 * 2 1 4 4 C 1.52997 * 109.47059 * 119.99942 * 2 1 3 5 5 C 1.52999 * 109.47103 * 174.10511 * 4 2 1 6 6 H 1.09007 * 109.46765 * 53.44572 * 5 4 2 7 7 C 1.52999 * 109.47089 * 173.44437 * 5 4 2 8 8 C 1.50700 * 109.47267 * 293.44641 * 5 4 2 9 9 O 1.21279 * 120.00200 * 0.02562 * 8 5 4 10 10 N 1.34776 * 120.00013 * 179.97438 * 8 5 4 11 11 C 1.46505 * 120.00172 * 179.97438 * 10 8 5 12 12 C 1.52999 * 109.47184 * 180.02562 * 11 10 8 13 13 C 1.53779 * 113.61251 * 274.13947 * 12 11 10 14 14 C 1.53959 * 87.01634 * 220.04559 * 13 12 11 15 15 N 1.46494 * 113.54281 * 270.81324 * 14 13 12 16 16 C 1.36942 * 120.00230 * 252.49936 * 15 14 13 17 17 H 1.07997 * 119.99702 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00343 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99630 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47364 * 59.99872 * 20 18 16 22 22 H 1.48498 * 109.46893 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47172 * 299.99474 * 20 18 16 24 24 C 1.53775 * 113.61209 * 176.52887 * 12 11 10 25 25 H 1.08997 * 109.47310 * 299.99715 * 1 2 3 26 26 H 1.08997 * 109.47258 * 60.00244 * 1 2 3 27 27 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47189 * 239.99812 * 2 1 3 29 29 H 1.08998 * 109.47421 * 65.73272 * 3 2 1 30 30 H 1.09007 * 109.47050 * 185.72916 * 3 2 1 31 31 H 1.09001 * 109.47377 * 305.73039 * 3 2 1 32 32 H 1.09004 * 109.47225 * 54.10634 * 4 2 1 33 33 H 1.08999 * 109.47262 * 294.10805 * 4 2 1 34 34 H 1.09006 * 109.47058 * 181.89479 * 7 5 4 35 35 H 1.09006 * 109.47190 * 61.90057 * 7 5 4 36 36 H 1.08994 * 109.47258 * 301.89793 * 7 5 4 37 37 H 0.97001 * 119.99885 * 0.02562 * 10 8 5 38 38 H 1.08997 * 109.46976 * 300.00414 * 11 10 8 39 39 H 1.09000 * 109.46671 * 60.00487 * 11 10 8 40 40 H 1.09001 * 112.84601 * 45.33705 * 12 11 10 41 41 H 1.08998 * 113.61768 * 334.56755 * 13 12 11 42 42 H 1.08996 * 113.61499 * 105.47546 * 13 12 11 43 43 H 1.09001 * 113.74166 * 139.94504 * 14 13 12 44 44 H 0.97003 * 120.00033 * 72.48581 * 15 14 13 45 45 H 0.96995 * 120.00006 * 180.02562 * 19 18 16 46 46 H 1.08998 * 113.61471 * 254.53053 * 24 12 11 47 47 H 1.09001 * 113.61379 * 25.43726 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5628 -0.8508 1.1774 6 1 4.0033 0.1315 1.0062 7 6 4.0887 -1.4229 2.4953 8 6 3.9357 -1.7728 0.0452 9 8 3.0688 -2.2763 -0.6374 10 7 5.2325 -2.0371 -0.2095 11 6 5.5950 -2.9339 -1.3099 12 6 7.1178 -3.0633 -1.3818 13 6 7.7918 -1.9555 -2.2083 14 6 8.7240 -3.0479 -2.7632 15 7 9.9314 -3.2509 -1.9587 16 6 11.1456 -2.8236 -2.4261 17 1 11.2131 -2.3373 -3.3880 18 6 12.2894 -3.0154 -1.6636 19 7 12.2071 -3.6077 -0.4910 20 14 13.9457 -2.4331 -2.3016 21 1 13.9032 -0.9652 -2.5215 22 1 15.0001 -2.7537 -1.3062 23 1 14.2506 -3.1172 -3.5839 24 6 7.6019 -4.0531 -2.4545 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.7629 1.9259 0.9368 30 1 3.1252 1.4443 -0.1026 31 1 1.5952 1.9851 -0.8342 32 1 1.5931 -1.7139 1.3036 33 1 1.7654 -0.1501 2.1361 34 1 5.1764 -1.4838 2.4567 35 1 3.6744 -2.4192 2.6500 36 1 3.7901 -0.7735 3.3182 37 1 5.9258 -1.6341 0.3362 38 1 5.1549 -3.9161 -1.1380 39 1 5.2199 -2.5268 -2.2489 40 1 7.5758 -3.2195 -0.4051 41 1 7.1392 -1.5143 -2.9617 42 1 8.3049 -1.2091 -1.6019 43 1 8.9369 -2.9443 -3.8272 44 1 9.8707 -3.6878 -1.0948 45 1 13.0063 -3.7414 0.0420 46 1 7.9618 -4.9976 -2.0465 47 1 6.8972 -4.1864 -3.2753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100795587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = -39.663578 kcal Electronic energy + Delta-G solvation = -22394.685917 eV Core-core repulsion = 19191.131860 eV Total energy + Delta-G solvation = -3203.554057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17241 -38.63925 -36.62158 -34.61963 -33.45058 -32.87403 -30.15250 -27.47405 -27.34730 -26.73319 -25.07080 -23.99714 -23.10689 -21.61058 -20.43690 -19.81882 -18.36835 -17.40233 -17.03683 -16.03346 -15.54185 -15.21757 -14.91795 -14.51016 -14.25587 -14.00914 -13.77286 -13.59471 -13.22937 -12.93352 -12.87997 -12.50394 -12.41179 -12.25365 -12.08329 -11.92646 -11.87867 -11.60187 -11.39150 -11.05443 -10.84588 -10.80961 -10.62128 -10.61416 -10.48315 -10.22077 -10.03957 -9.70757 -9.62212 -9.40921 -8.94607 -8.87894 -7.02239 -5.82753 -3.11866 2.68258 3.25880 3.40946 3.45504 3.46355 4.44645 4.53949 4.62643 4.66354 4.88021 5.02471 5.05335 5.07605 5.13604 5.19191 5.26912 5.41861 5.43557 5.45901 5.57490 5.62457 5.64022 5.66744 5.70681 5.72006 5.77125 5.84320 5.87335 5.95813 5.96970 6.07689 6.10893 6.20372 6.21832 6.35918 6.36265 6.49182 6.59435 6.73152 6.89548 7.03026 7.57241 7.66559 8.28057 8.36549 9.47080 10.04638 10.38861 11.39647 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.002788 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.377661 B =10041.954870 C =10210.009520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.149 4.149 4 C -0.092 4.092 5 C -0.116 4.116 6 H 0.098 0.902 7 C -0.145 4.145 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.724 5.724 11 C 0.131 3.869 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.148 4.148 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.401 0.599 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 6.710 4.238 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.206 4.206 4 C -0.130 4.130 5 C -0.137 4.137 6 H 0.116 0.884 7 C -0.203 4.203 8 C 0.300 3.700 9 O -0.421 6.421 10 N -0.375 5.375 11 C 0.008 3.992 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.581 6.386 3.653 21.856 hybrid contribution 1.294 0.398 0.333 1.394 sum -19.287 6.784 3.986 20.830 Atomic orbital electron populations 1.21779 0.95494 1.01577 1.01137 1.21256 0.95640 0.95743 0.99763 1.21916 1.00889 0.96395 1.01430 1.21465 0.92420 1.01326 0.97779 1.21438 0.98519 0.99463 0.94282 0.88424 1.21786 1.01371 1.01583 0.95525 1.20641 0.82432 0.81754 0.85144 1.90652 1.48657 1.52246 1.50497 1.46122 1.07462 1.49198 1.34764 1.21449 0.95312 0.93185 0.89283 1.22701 0.92102 0.99477 0.99529 1.23907 0.99693 0.97948 0.99385 1.21091 0.86042 0.92288 0.95067 1.42165 1.01547 1.69919 1.20792 1.19247 0.84756 1.31581 1.01811 0.91051 1.24762 0.97994 1.01320 0.96786 1.69648 1.28446 1.47932 1.12094 0.86241 0.83695 0.78395 0.77698 1.21220 1.21673 1.21180 1.23438 0.99218 0.98362 0.97756 0.93183 0.93019 0.92724 0.89403 0.92930 0.92864 0.92915 0.91195 0.91617 0.91902 0.92108 0.91483 0.76449 0.92006 0.91733 0.88972 0.91464 0.91545 0.91987 0.78121 0.93377 0.91348 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 37.16 0.34 -0.90 16 2 C -0.11 -1.04 2.71 -90.62 -0.25 -1.28 16 3 C -0.15 -1.27 8.83 37.16 0.33 -0.94 16 4 C -0.09 -0.85 3.78 -26.73 -0.10 -0.95 16 5 C -0.12 -1.08 2.62 -91.77 -0.24 -1.32 16 6 H 0.10 0.81 6.44 -51.93 -0.33 0.48 16 7 C -0.15 -1.15 9.07 37.16 0.34 -0.81 16 8 C 0.51 6.44 6.83 -10.99 -0.07 6.36 16 9 O -0.54 -8.57 14.09 5.56 0.08 -8.49 16 10 N -0.72 -8.71 5.46 -60.29 -0.33 -9.04 16 11 C 0.13 1.75 5.50 -4.04 -0.02 1.73 16 12 C -0.12 -1.77 3.62 -89.81 -0.33 -2.09 16 13 C -0.17 -2.77 7.44 -25.83 -0.19 -2.96 16 14 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 15 N -0.71 -17.24 5.31 -52.55 -0.28 -17.52 16 16 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 20 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 C -0.15 -2.36 7.39 -25.92 -0.19 -2.56 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.11 6.01 -51.93 -0.31 0.79 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.46 6.73 -51.93 -0.35 0.11 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.48 7.62 -51.93 -0.40 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.40 4.23 7.92 -40.82 -0.32 3.91 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.38 9.93 7.90 -40.82 -0.32 9.61 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -30.47 372.18 -8.89 -39.35 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.73 Total: 10.01 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.94 Total: -10.02 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.12 Total: -53.48 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.47 -8.89 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100795587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.310 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds