Wall clock time and date at job start Tue Mar 31 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47532 * 2 1 4 4 C 1.53004 * 109.47090 * 240.00222 * 2 1 3 5 5 C 1.53003 * 109.46904 * 175.00159 * 4 2 1 6 6 H 1.08996 * 109.47458 * 304.99496 * 5 4 2 7 7 C 1.53000 * 109.46860 * 185.00338 * 5 4 2 8 8 N 1.46496 * 109.47375 * 65.00609 * 5 4 2 9 9 C 1.34780 * 119.99949 * 205.00227 * 8 5 4 10 10 O 1.21282 * 119.99926 * 359.97438 * 9 8 5 11 11 C 1.50697 * 119.99655 * 179.97438 * 9 8 5 12 12 C 1.53004 * 109.46862 * 179.97438 * 11 9 8 13 13 C 1.54894 * 110.48128 * 68.24509 * 12 11 9 14 14 C 1.55238 * 102.58338 * 156.67574 * 13 12 11 15 15 C 1.54266 * 104.23333 * 322.08174 * 14 13 12 16 16 C 1.53869 * 106.59800 * 23.61579 * 15 14 13 17 17 N 1.46502 * 109.47039 * 120.00530 * 2 1 3 18 18 C 1.36937 * 119.99750 * 274.99508 * 17 2 1 19 19 H 1.07997 * 120.00335 * 0.02562 * 18 17 2 20 20 C 1.38814 * 119.99726 * 179.97438 * 18 17 2 21 21 N 1.31622 * 120.00084 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99775 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47346 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47135 * 120.00203 * 22 20 18 25 25 H 1.48502 * 109.47056 * 239.99916 * 22 20 18 26 26 H 1.09007 * 109.46736 * 59.99633 * 1 2 3 27 27 H 1.08994 * 109.47568 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47350 * 299.99909 * 1 2 3 29 29 H 1.09002 * 109.46674 * 55.00435 * 4 2 1 30 30 H 1.08995 * 109.47180 * 295.00106 * 4 2 1 31 31 H 1.08999 * 109.47216 * 180.02562 * 7 5 4 32 32 H 1.09008 * 109.47021 * 299.99818 * 7 5 4 33 33 H 1.08998 * 109.47844 * 59.99621 * 7 5 4 34 34 H 0.96998 * 120.00038 * 24.99119 * 8 5 4 35 35 H 1.09002 * 109.47212 * 60.00426 * 11 9 8 36 36 H 1.08991 * 109.47390 * 299.99580 * 11 9 8 37 37 H 1.09002 * 110.43542 * 305.70357 * 12 11 9 38 38 H 1.08996 * 110.75388 * 275.05927 * 13 12 11 39 39 H 1.08993 * 110.76071 * 38.44153 * 13 12 11 40 40 H 1.09005 * 110.46917 * 203.39204 * 14 13 12 41 41 H 1.09007 * 110.58541 * 80.83124 * 14 13 12 42 42 H 1.08999 * 110.03060 * 264.32313 * 15 14 13 43 43 H 1.09006 * 110.06829 * 142.91691 * 15 14 13 44 44 H 1.09001 * 110.02983 * 240.71432 * 16 15 14 45 45 H 1.08995 * 110.03881 * 119.28625 * 16 15 14 46 46 H 0.96999 * 119.99919 * 95.00212 * 17 2 1 47 47 H 0.97002 * 119.99840 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2249 -2.6241 8 7 4.1537 -1.3343 -0.1825 9 6 5.3748 -0.9912 0.2733 10 8 5.9862 -0.0858 -0.2533 11 6 5.9802 -1.7326 1.4372 12 6 7.3598 -1.1502 1.7508 13 6 7.2264 0.2870 2.3130 14 6 8.5480 0.4631 3.1082 15 6 8.7903 -0.9179 3.7516 16 6 8.0350 -1.9436 2.8885 17 7 2.0183 -0.6907 1.1961 18 6 2.1491 -0.0076 2.3757 19 1 1.8920 1.0401 2.4244 20 6 2.6113 -0.6623 3.5092 21 7 2.9233 -1.9396 3.4503 22 14 2.7891 0.2694 5.1185 23 1 2.3744 1.6816 4.9214 24 1 1.9280 -0.3593 6.1522 25 1 4.2059 0.2263 5.5615 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -0.2616 -2.1370 30 1 1.7516 -1.7714 -1.2057 31 1 5.1508 -1.1484 -2.6698 32 1 3.7722 -2.2740 -2.6701 33 1 3.6264 -0.6885 -3.4658 34 1 3.6647 -2.0585 0.2385 35 1 6.0809 -2.7878 1.1831 36 1 5.3349 -1.6288 2.3094 37 1 7.9864 -1.1543 0.8588 38 1 7.1601 1.0138 1.5034 39 1 6.3639 0.3644 2.9748 40 1 8.4313 1.2269 3.8771 41 1 9.3676 0.7206 2.4373 42 1 8.4021 -0.9286 4.7701 43 1 9.8562 -1.1465 3.7562 44 1 7.2800 -2.4522 3.4881 45 1 8.7341 -2.6696 2.4736 46 1 2.2490 -1.6319 1.1525 47 1 3.2466 -2.3969 4.2423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133572948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:03 Heat of formation + Delta-G solvation = -56.878925 kcal Electronic energy + Delta-G solvation = -24201.625326 eV Core-core repulsion = 20997.324755 eV Total energy + Delta-G solvation = -3204.300570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.37941 -37.68164 -36.47944 -34.08423 -32.27110 -31.26946 -30.11607 -28.49979 -28.24374 -26.31642 -25.27950 -23.64712 -21.22779 -20.17995 -20.15645 -19.56257 -19.03481 -17.16397 -16.38979 -15.77931 -15.18755 -14.85517 -14.51083 -14.39958 -13.79270 -13.69123 -13.23449 -13.10036 -12.85896 -12.69925 -12.47134 -12.11516 -11.87950 -11.72653 -11.63725 -11.31223 -10.99145 -10.93888 -10.85068 -10.72727 -10.64362 -10.56159 -10.31515 -10.22217 -10.18765 -10.17365 -9.97104 -9.86430 -9.67365 -8.94690 -8.92967 -8.21960 -6.93216 -5.80387 -3.05749 3.41248 3.49228 3.49810 3.52475 4.00364 4.58695 4.96912 5.02527 5.11485 5.15777 5.44627 5.50993 5.56773 5.67289 5.69194 5.73325 5.80094 5.85081 5.92418 5.99076 6.01047 6.04092 6.04836 6.12334 6.18239 6.20150 6.26533 6.28936 6.39416 6.41582 6.48168 6.50093 6.56440 6.60230 6.63830 6.75452 6.83125 6.88186 7.00910 7.07784 7.33452 7.70860 8.34872 8.41024 9.10275 9.50898 10.05512 10.41412 11.42064 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.007827 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.226279 B = 3576.316192 C = 5294.075867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.080 0.920 7 C -0.161 4.161 8 N -0.700 5.700 9 C 0.530 3.470 10 O -0.567 6.567 11 C -0.139 4.139 12 C -0.069 4.069 13 C -0.115 4.115 14 C -0.126 4.126 15 C -0.122 4.122 16 C -0.122 4.122 17 N -0.715 5.715 18 C -0.224 4.224 19 H 0.067 0.933 20 C -0.010 4.010 21 N -0.933 5.933 22 Si 0.895 3.105 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.291 1.291 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.404 0.596 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.378 0.622 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -1.179 -6.547 8.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.098 0.902 7 C -0.220 4.220 8 N -0.352 5.352 9 C 0.318 3.682 10 O -0.447 6.447 11 C -0.178 4.178 12 C -0.088 4.088 13 C -0.153 4.153 14 C -0.163 4.163 15 C -0.160 4.160 16 C -0.159 4.159 17 N -0.358 5.358 18 C -0.355 4.355 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.583 5.583 22 Si 0.727 3.273 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.218 1.218 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.241 0.759 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.213 0.787 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.703 -0.417 -6.781 8.870 hybrid contribution -0.266 -0.217 1.272 1.318 sum 5.436 -0.634 -5.509 7.765 Atomic orbital electron populations 1.22422 0.99399 1.00673 0.99860 1.20274 0.91586 0.95703 0.86466 0.93517 1.22196 0.94239 1.01490 0.99241 1.20743 0.92352 0.97272 0.85195 0.90166 1.22202 1.01665 1.00696 0.97404 1.46000 1.18121 1.37620 1.33503 1.20477 0.81013 0.83250 0.83487 1.90573 1.62309 1.31605 1.60216 1.21789 0.97461 0.99195 0.99378 1.21651 0.94766 0.95035 0.97366 1.22599 0.96663 0.96753 0.99254 1.22421 0.98293 0.96599 0.99011 1.22101 0.99368 0.95323 0.99221 1.22213 0.99060 0.97651 0.97017 1.42451 1.77901 1.10159 1.05332 1.19241 1.35295 0.93746 0.87238 0.91542 1.24545 1.02595 0.95913 0.97448 1.69601 1.51818 1.08247 1.28597 0.86286 0.77397 0.78958 0.84657 1.20862 1.22169 1.21788 0.94642 0.93636 0.92926 0.91050 0.91852 0.92516 0.92967 0.92375 0.75906 0.90410 0.86133 0.91049 0.90701 0.91379 0.92332 0.92214 0.92181 0.92573 0.91400 0.92438 0.78680 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.15 2.89 -67.93 -0.20 2.96 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -2.02 4.43 -26.73 -0.12 -2.13 16 5 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 6 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 7 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 8 N -0.70 -12.59 3.80 -53.81 -0.20 -12.80 16 9 C 0.53 10.36 7.59 -10.99 -0.08 10.28 16 10 O -0.57 -12.27 14.27 5.56 0.08 -12.19 16 11 C -0.14 -2.51 5.06 -27.88 -0.14 -2.65 16 12 C -0.07 -1.16 2.45 -88.96 -0.22 -1.38 16 13 C -0.12 -2.05 5.72 -24.55 -0.14 -2.19 16 14 C -0.13 -1.86 6.84 -24.88 -0.17 -2.03 16 15 C -0.12 -1.70 6.80 -25.62 -0.17 -1.87 16 16 C -0.12 -1.79 6.37 -25.62 -0.16 -1.95 16 17 N -0.72 -15.92 3.84 -53.42 -0.21 -16.12 16 18 C -0.22 -5.75 9.93 -15.06 -0.15 -5.90 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -24.63 12.79 55.49 0.71 -23.92 16 22 Si 0.90 21.64 29.55 -169.99 -5.02 16.61 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 7.39 6.51 -40.82 -0.27 7.12 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.12 2.54 7.79 -51.93 -0.40 2.14 16 37 H 0.07 1.21 7.96 -51.93 -0.41 0.79 16 38 H 0.07 1.44 7.16 -51.93 -0.37 1.06 16 39 H 0.07 1.37 8.00 -51.93 -0.42 0.95 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.38 8.62 5.70 -40.82 -0.23 8.39 16 47 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -27.19 367.45 -9.02 -36.21 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -8.79 Total: 15.96 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.12 Total: -9.28 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.30 Total: -52.85 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.19 -9.02 -36.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133572948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.671 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds