Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.52995 * 109.47299 * 179.97438 * 20 18 17 22 22 C 1.54267 * 110.03418 * 292.90895 * 21 20 18 23 23 C 1.54961 * 104.16186 * 217.13342 * 22 21 20 24 24 C 1.54888 * 102.77686 * 37.89104 * 23 22 21 25 25 C 1.53872 * 110.03512 * 175.69286 * 21 20 18 26 26 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 27 27 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 28 28 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 30 30 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 31 31 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 32 32 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 33 33 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 34 34 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 35 35 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 36 36 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 37 37 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 38 38 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 39 39 H 1.09000 * 110.01688 * 54.29541 * 21 20 18 40 40 H 1.09004 * 110.48486 * 335.78519 * 22 21 20 41 41 H 1.09007 * 110.48931 * 98.42294 * 22 21 20 42 42 H 1.08999 * 110.72142 * 279.57484 * 23 22 21 43 43 H 1.09000 * 110.92130 * 156.29125 * 23 22 21 44 44 H 1.08999 * 110.48497 * 203.40981 * 24 23 22 45 45 H 1.08995 * 110.60304 * 80.81626 * 24 23 22 46 46 H 1.09005 * 110.03189 * 238.56823 * 25 21 20 47 47 H 1.08995 * 110.03122 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 2.7010 0.2544 4.7588 22 6 3.7807 1.3258 4.5015 23 6 4.4006 1.5824 5.8984 24 6 4.4228 0.1677 6.5285 25 6 3.1086 -0.4814 6.0472 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 1.6054 -0.2618 -2.1369 30 1 1.7515 -1.7716 -1.2055 31 1 3.6263 -0.6888 -3.4657 32 1 5.1507 -1.1479 -2.6701 33 1 3.7721 -2.2742 -2.6699 34 1 3.6646 -2.0586 0.2387 35 1 4.4079 -2.8955 1.5989 36 1 2.2489 -1.6318 1.1527 37 1 1.9758 -1.5506 3.8326 38 1 3.6479 -1.1214 3.3987 39 1 1.7286 0.7287 4.8913 40 1 4.5363 0.9481 3.8125 41 1 3.3283 2.2373 4.1107 42 1 3.7718 2.2552 6.4816 43 1 5.4110 1.9811 5.8085 44 1 4.4390 0.2348 7.6163 45 1 5.2819 -0.3987 6.1692 46 1 2.3344 -0.3635 6.8054 47 1 3.2688 -1.5391 5.8383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133572949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -55.161964 kcal Electronic energy + Delta-G solvation = -24313.457528 eV Core-core repulsion = 21109.231411 eV Total energy + Delta-G solvation = -3204.226117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.50077 -37.75237 -36.58346 -34.27731 -32.49807 -31.27775 -30.10855 -28.27132 -28.23226 -26.39462 -25.32490 -23.48835 -21.29637 -20.31750 -20.31092 -19.67791 -18.94014 -17.38965 -16.52901 -15.82146 -15.18849 -15.00741 -14.61869 -14.38626 -14.02983 -13.58518 -13.27741 -13.13160 -13.03485 -12.89423 -12.51330 -12.17144 -12.02506 -11.74046 -11.60882 -11.38999 -11.05241 -10.83590 -10.77232 -10.67272 -10.55827 -10.49126 -10.38991 -10.30763 -10.16924 -10.10269 -9.99164 -9.94524 -9.17631 -9.02401 -8.95452 -8.33092 -7.00539 -6.10209 -3.09095 3.42273 3.51477 3.53384 3.69883 3.88643 4.65291 4.96797 5.03472 5.06407 5.15040 5.35444 5.42517 5.55891 5.61115 5.63438 5.68427 5.77990 5.83039 5.83615 5.93533 5.95220 6.03271 6.06174 6.09230 6.14008 6.18274 6.21459 6.28147 6.32354 6.37074 6.44678 6.47350 6.49347 6.53019 6.56211 6.73634 6.80560 6.84217 6.98114 6.99955 7.20562 7.81489 8.22351 8.72351 8.98031 9.19939 10.04785 10.21277 11.36261 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.008048 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.319692 B = 3478.099778 C = 5192.247254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.081 0.919 4 C -0.134 4.134 5 C 0.175 3.825 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.726 5.726 9 C -0.315 4.315 10 H 0.060 0.940 11 C -0.041 4.041 12 N -0.942 5.942 13 Si 1.068 2.932 14 H -0.285 1.285 15 H -0.298 1.298 16 H -0.296 1.296 17 N -0.704 5.704 18 C 0.528 3.472 19 O -0.562 6.562 20 C -0.142 4.142 21 C -0.069 4.069 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.249 0.751 36 H 0.398 0.602 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 3.032 1.745 8.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.099 0.901 4 C -0.173 4.173 5 C 0.066 3.934 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.371 5.371 9 C -0.447 4.447 10 H 0.078 0.922 11 C -0.238 4.238 12 N -0.589 5.589 13 Si 0.900 3.100 14 H -0.210 1.210 15 H -0.226 1.226 16 H -0.223 1.223 17 N -0.356 5.356 18 C 0.315 3.685 19 O -0.441 6.441 20 C -0.181 4.181 21 C -0.088 4.088 22 C -0.150 4.150 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.158 4.158 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.195 0.805 35 H 0.061 0.939 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.257 3.694 2.828 7.797 hybrid contribution -1.066 -0.406 -1.309 1.737 sum -7.323 3.288 1.518 8.170 Atomic orbital electron populations 1.22198 0.96449 1.01459 1.01845 1.20751 0.92352 0.97686 0.84714 0.90066 1.22213 0.97791 1.00452 0.96816 1.20202 0.89560 0.95811 0.87865 0.93407 1.22408 1.01583 1.00200 0.98114 1.42451 1.19008 1.39969 1.35628 1.20000 0.94179 1.16009 1.14474 0.92171 1.25496 1.05252 0.97235 0.95839 1.70962 1.14055 1.30452 1.43411 0.83381 0.75137 0.75322 0.76175 1.21036 1.22577 1.22316 1.46007 1.66560 1.13964 1.09026 1.20556 0.76054 0.87065 0.84787 1.90584 1.51529 1.16275 1.85716 1.21931 1.05059 0.98545 0.92597 1.21423 0.99408 0.95075 0.92859 1.22386 0.97534 0.98879 0.96166 1.22519 1.00291 0.96590 0.96969 1.22340 0.98201 0.96422 0.99187 1.22210 0.96969 1.00090 0.96540 0.92447 0.92270 0.92967 0.90890 0.91990 0.94516 0.92850 0.93774 0.80468 0.93948 0.76600 0.90379 0.86220 0.91324 0.91202 0.91389 0.92238 0.92067 0.92447 0.91331 0.92461 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.15 0.35 -1.87 16 2 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16 3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.13 -2.04 4.43 -26.73 -0.12 -2.16 16 5 C 0.18 3.31 2.89 -67.93 -0.20 3.12 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 8 N -0.73 -16.27 3.84 -53.43 -0.21 -16.48 16 9 C -0.32 -8.24 9.93 -15.06 -0.15 -8.39 16 10 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 11 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 12 N -0.94 -25.78 13.40 55.49 0.74 -25.03 16 13 Si 1.07 25.19 29.92 -169.99 -5.09 20.10 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.70 -12.61 3.80 -53.81 -0.20 -12.82 16 18 C 0.53 10.34 7.57 -10.98 -0.08 10.25 16 19 O -0.56 -12.21 14.45 5.56 0.08 -12.13 16 20 C -0.14 -2.57 4.83 -27.89 -0.13 -2.71 16 21 C -0.07 -1.16 2.55 -89.51 -0.23 -1.38 16 22 C -0.11 -2.01 5.40 -25.03 -0.14 -2.14 16 23 C -0.13 -1.89 6.91 -24.70 -0.17 -2.06 16 24 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 25 C -0.12 -1.77 6.46 -25.61 -0.17 -1.94 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.36 8.10 4.54 -40.82 -0.19 7.91 16 35 H 0.25 6.61 6.77 -40.82 -0.28 6.34 16 36 H 0.40 7.13 6.51 -40.82 -0.27 6.87 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.12 2.55 7.72 -51.93 -0.40 2.15 16 39 H 0.07 1.16 7.95 -51.93 -0.41 0.75 16 40 H 0.07 1.45 7.77 -51.93 -0.40 1.04 16 41 H 0.07 1.27 7.63 -51.93 -0.40 0.88 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -28.44 365.61 -8.96 -37.39 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -8.68 Total: 16.11 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.12 Total: -12.66 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.33 Total: -54.33 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.44 -8.96 -37.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133572949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.767 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds