Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.52995 * 109.47299 * 179.97438 * 20 18 17 22 22 C 1.54267 * 110.03418 * 292.90895 * 21 20 18 23 23 C 1.54961 * 104.16186 * 217.13342 * 22 21 20 24 24 C 1.54888 * 102.77686 * 37.89104 * 23 22 21 25 25 C 1.53872 * 110.03512 * 175.69286 * 21 20 18 26 26 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 27 27 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 28 28 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 30 30 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 31 31 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 32 32 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 33 33 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 34 34 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 35 35 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 36 36 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 37 37 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 38 38 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 39 39 H 1.09000 * 110.01688 * 54.29541 * 21 20 18 40 40 H 1.09004 * 110.48486 * 335.78519 * 22 21 20 41 41 H 1.09007 * 110.48931 * 98.42294 * 22 21 20 42 42 H 1.08999 * 110.72142 * 279.57484 * 23 22 21 43 43 H 1.09000 * 110.92130 * 156.29125 * 23 22 21 44 44 H 1.08999 * 110.48497 * 203.40981 * 24 23 22 45 45 H 1.08995 * 110.60304 * 80.81626 * 24 23 22 46 46 H 1.09005 * 110.03189 * 238.56823 * 25 21 20 47 47 H 1.08995 * 110.03122 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 2.7010 0.2544 4.7588 22 6 3.7807 1.3258 4.5015 23 6 4.4006 1.5824 5.8984 24 6 4.4228 0.1677 6.5285 25 6 3.1086 -0.4814 6.0472 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 1.6054 -0.2618 -2.1369 30 1 1.7515 -1.7716 -1.2055 31 1 3.6263 -0.6888 -3.4657 32 1 5.1507 -1.1479 -2.6701 33 1 3.7721 -2.2742 -2.6699 34 1 3.6646 -2.0586 0.2387 35 1 4.4079 -2.8955 1.5989 36 1 2.2489 -1.6318 1.1527 37 1 1.9758 -1.5506 3.8326 38 1 3.6479 -1.1214 3.3987 39 1 1.7286 0.7287 4.8913 40 1 4.5363 0.9481 3.8125 41 1 3.3283 2.2373 4.1107 42 1 3.7718 2.2552 6.4816 43 1 5.4110 1.9811 5.8085 44 1 4.4390 0.2348 7.6163 45 1 5.2819 -0.3987 6.1692 46 1 2.3344 -0.3635 6.8054 47 1 3.2688 -1.5391 5.8383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133572949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -70.076697 kcal Electronic energy + Delta-G solvation = -24314.104279 eV Core-core repulsion = 21109.231411 eV Total energy + Delta-G solvation = -3204.872869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00063 -39.11639 -38.11780 -35.93822 -34.23151 -32.75388 -31.52468 -29.98769 -29.52415 -27.69144 -26.69353 -25.46570 -22.70205 -21.80180 -21.59414 -21.15442 -20.33040 -19.34906 -17.99891 -17.27372 -16.75117 -16.54525 -16.05707 -15.83160 -15.73794 -15.40211 -14.69742 -14.56203 -14.41360 -14.18908 -13.95705 -13.55418 -13.44364 -13.18780 -12.90885 -12.83188 -12.71068 -12.54613 -12.20152 -12.09793 -11.94245 -11.89449 -11.82865 -11.77447 -11.64869 -11.60901 -11.50729 -11.28066 -11.11540 -10.86848 -10.57811 -9.84642 -8.90795 -8.21808 -5.14242 1.56615 1.62782 1.78784 1.85671 2.46551 2.71458 3.50945 3.64494 3.74154 3.74982 3.83429 3.88077 4.07849 4.17730 4.29851 4.40752 4.43405 4.48534 4.59662 4.61324 4.68492 4.74832 4.77861 4.78229 4.84129 4.89269 4.93366 4.98742 5.00858 5.02578 5.07138 5.11445 5.15053 5.24193 5.30018 5.32608 5.40730 5.50722 5.52746 5.58447 5.71070 5.77503 6.65812 6.71295 7.23581 7.45091 8.11241 8.24633 9.28019 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.008048 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.319692 B = 3478.099778 C = 5192.247254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.051 0.949 4 C -0.120 4.120 5 C 0.168 3.832 6 H 0.024 0.976 7 C -0.153 4.153 8 N -0.729 5.729 9 C -0.318 4.318 10 H 0.043 0.957 11 C -0.081 4.081 12 N -0.957 5.957 13 Si 1.101 2.899 14 H -0.289 1.289 15 H -0.288 1.288 16 H -0.294 1.294 17 N -0.699 5.699 18 C 0.520 3.480 19 O -0.588 6.588 20 C -0.135 4.135 21 C -0.067 4.067 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.116 4.116 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.048 0.952 34 H 0.361 0.639 35 H 0.247 0.753 36 H 0.398 0.602 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 2.685 1.771 9.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.158 4.158 5 C 0.059 3.941 6 H 0.042 0.958 7 C -0.212 4.212 8 N -0.374 5.374 9 C -0.450 4.450 10 H 0.061 0.939 11 C -0.275 4.275 12 N -0.605 5.605 13 Si 0.930 3.070 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.221 1.221 17 N -0.350 5.350 18 C 0.308 3.692 19 O -0.470 6.470 20 C -0.175 4.175 21 C -0.086 4.086 22 C -0.150 4.150 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.153 4.153 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.195 0.805 35 H 0.058 0.942 36 H 0.234 0.766 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.645 3.341 2.804 8.802 hybrid contribution -0.651 -0.246 -1.409 1.571 sum -8.296 3.095 1.395 8.964 Atomic orbital electron populations 1.22082 0.93792 1.02632 1.02250 1.20881 0.94344 0.96019 0.84593 0.93103 1.22122 0.94681 1.01484 0.97502 1.20403 0.92148 0.94088 0.87439 0.95836 1.22256 0.99981 1.00777 0.98232 1.42469 1.18021 1.40245 1.36682 1.20073 0.95516 1.15197 1.14212 0.93860 1.26302 1.07305 0.97461 0.96391 1.71005 1.14295 1.31185 1.43968 0.82922 0.73202 0.75005 0.75875 1.21431 1.21498 1.22136 1.46065 1.65870 1.13895 1.09206 1.20852 0.75861 0.86857 0.85656 1.90561 1.52939 1.17306 1.86213 1.21870 1.03463 0.99390 0.92777 1.21437 0.99007 0.94627 0.93498 1.22299 0.97029 0.98417 0.97279 1.22516 1.00555 0.97619 0.95091 1.22347 0.97310 0.95459 1.00906 1.22201 0.97880 0.99376 0.95866 0.94189 0.89743 0.91325 0.87464 0.90590 0.91141 0.95453 0.93323 0.80466 0.94184 0.76555 0.88260 0.89401 0.91104 0.95156 0.92982 0.90039 0.91915 0.89465 0.93162 0.89760 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.48 71.98 0.68 -3.11 16 2 C 0.15 4.67 2.57 44.99 0.12 4.78 16 3 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 4 C -0.12 -3.38 4.43 30.59 0.14 -3.24 16 5 C 0.17 6.24 2.89 44.99 0.13 6.37 16 6 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 7 C -0.15 -5.10 9.49 71.98 0.68 -4.42 16 8 N -0.73 -33.07 3.84 -322.95 -1.24 -34.31 16 9 C -0.32 -17.03 9.93 84.03 0.83 -16.20 16 10 H 0.04 2.43 7.83 -2.91 -0.02 2.40 16 11 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 12 N -0.96 -53.16 13.40 21.65 0.29 -52.87 16 13 Si 1.10 51.96 29.92 68.60 2.05 54.01 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 17 N -0.70 -25.22 3.80 -442.55 -1.68 -26.91 16 18 C 0.52 20.87 7.57 87.65 0.66 21.53 16 19 O -0.59 -26.40 14.45 -3.02 -0.04 -26.44 16 20 C -0.14 -5.02 4.83 29.85 0.14 -4.87 16 21 C -0.07 -2.25 2.55 -10.07 -0.03 -2.27 16 22 C -0.11 -4.16 5.40 31.69 0.17 -3.99 16 23 C -0.12 -3.51 6.91 31.91 0.22 -3.29 16 24 C -0.12 -3.37 6.83 31.67 0.22 -3.15 16 25 C -0.12 -3.23 6.46 31.32 0.20 -3.03 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.72 8.14 -2.38 -0.02 1.71 16 28 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.36 16.29 4.54 -92.71 -0.42 15.87 16 35 H 0.25 13.33 6.77 -92.71 -0.63 12.70 16 36 H 0.40 14.29 6.51 -92.71 -0.60 13.69 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.09 3.90 7.72 -2.39 -0.02 3.89 16 39 H 0.07 2.36 7.95 -2.39 -0.02 2.34 16 40 H 0.03 1.33 7.77 -2.38 -0.02 1.31 16 41 H 0.05 2.04 7.63 -2.38 -0.02 2.02 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 47 H 0.06 1.81 7.67 -2.39 -0.02 1.80 16 Total: -1.00 -63.42 365.61 4.06 -59.36 By element: Atomic # 1 Polarization: 45.92 SS G_CDS: 0.04 Total: 45.97 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.64 Total: -18.80 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -2.63 Total: -114.09 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.01 kcal Total: -63.42 4.06 -59.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133572949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.720 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds