Wall clock time and date at job start Tue Mar 31 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47266 * 2 1 4 4 C 1.52992 * 109.47418 * 239.99825 * 2 1 3 5 5 C 1.53002 * 109.47374 * 174.99985 * 4 2 1 6 6 H 1.09004 * 109.46683 * 55.00520 * 5 4 2 7 7 C 1.52999 * 109.47101 * 175.00038 * 5 4 2 8 8 N 1.46497 * 109.46983 * 295.00228 * 5 4 2 9 9 C 1.34780 * 119.99566 * 155.00136 * 8 5 4 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 5 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 9 8 13 13 C 1.54267 * 110.03373 * 292.90976 * 12 11 9 14 14 C 1.54968 * 104.16137 * 217.13581 * 13 12 11 15 15 C 1.54884 * 102.77441 * 37.88396 * 14 13 12 16 16 C 1.53874 * 110.03593 * 175.68896 * 12 11 9 17 17 N 1.46500 * 109.46791 * 119.99700 * 2 1 3 18 18 C 1.36939 * 120.00471 * 275.00181 * 17 2 1 19 19 H 1.07999 * 119.99476 * 359.97438 * 18 17 2 20 20 C 1.38814 * 120.00253 * 180.02562 * 18 17 2 21 21 N 1.31622 * 119.99554 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99806 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47140 * 89.99894 * 22 20 18 24 24 H 1.48504 * 109.46837 * 209.99368 * 22 20 18 25 25 H 1.48498 * 109.47534 * 329.99285 * 22 20 18 26 26 H 1.09008 * 109.46765 * 60.00176 * 1 2 3 27 27 H 1.08992 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47029 * 300.00571 * 1 2 3 29 29 H 1.09002 * 109.47285 * 55.00375 * 4 2 1 30 30 H 1.09000 * 109.47465 * 295.00586 * 4 2 1 31 31 H 1.09000 * 109.46920 * 180.02562 * 7 5 4 32 32 H 1.09004 * 109.47178 * 300.00239 * 7 5 4 33 33 H 1.08993 * 109.47354 * 60.00033 * 7 5 4 34 34 H 0.96995 * 120.00423 * 334.99441 * 8 5 4 35 35 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 36 36 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 37 37 H 1.09004 * 110.01939 * 54.29365 * 12 11 9 38 38 H 1.09001 * 110.48609 * 335.77840 * 13 12 11 39 39 H 1.08999 * 110.49311 * 98.42344 * 13 12 11 40 40 H 1.08997 * 110.72048 * 279.57487 * 14 13 12 41 41 H 1.08993 * 110.92252 * 156.29196 * 14 13 12 42 42 H 1.09009 * 110.48779 * 203.40596 * 15 14 13 43 43 H 1.09001 * 110.59973 * 80.82109 * 15 14 13 44 44 H 1.09003 * 110.03243 * 238.56963 * 16 12 11 45 45 H 1.08996 * 110.02723 * 359.95243 * 16 12 11 46 46 H 0.97002 * 119.99631 * 94.99968 * 17 2 1 47 47 H 0.96995 * 119.99295 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 1 3.9954 -0.9923 -0.3867 7 6 4.0852 -1.4383 -2.4923 8 7 3.9480 0.7894 -1.4923 9 6 5.1613 1.2135 -1.0866 10 8 5.9357 0.4341 -0.5731 11 6 5.5552 2.6565 -1.2699 12 6 6.9699 2.8717 -0.7286 13 6 6.9827 2.6913 0.8034 14 6 7.9864 3.7612 1.3028 15 6 7.7009 4.9619 0.3670 16 6 7.4268 4.3146 -1.0062 17 7 2.0182 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3759 19 1 1.8925 1.0405 2.4242 20 6 2.6121 -0.6617 3.5092 21 7 2.9251 -1.9388 3.4500 22 14 2.7898 0.2700 5.1184 23 1 1.5221 0.1778 5.8863 24 1 3.8947 -0.3227 5.9141 25 1 3.0938 1.6955 4.8342 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6055 -0.2617 -2.1369 30 1 1.7516 -1.7715 -1.2056 31 1 5.1716 -1.3617 -2.5379 32 1 3.8001 -2.4820 -2.3593 33 1 3.6547 -1.0594 -3.4192 34 1 3.3286 1.4128 -1.9027 35 1 5.5292 2.9083 -2.3301 36 1 4.8580 3.2952 -0.7275 37 1 7.6586 2.1661 -1.1933 38 1 5.9915 2.8757 1.2176 39 1 7.3273 1.6914 1.0671 40 1 9.0124 3.4134 1.1827 41 1 7.7888 4.0256 2.3415 42 1 8.5695 5.6183 0.3127 43 1 6.8265 5.5154 0.7092 44 1 8.3376 4.3092 -1.6050 45 1 6.6408 4.8612 -1.5273 46 1 2.2489 -1.6317 1.1527 47 1 3.2484 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133572951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:10 Heat of formation + Delta-G solvation = -62.583817 kcal Electronic energy + Delta-G solvation = -23446.146584 eV Core-core repulsion = 20241.598631 eV Total energy + Delta-G solvation = -3204.547953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72988 -37.93205 -36.58590 -34.34644 -32.18412 -31.60803 -30.21215 -28.56563 -28.53917 -26.30947 -25.67622 -23.56898 -21.37194 -20.61201 -20.19422 -19.65006 -19.33975 -17.28227 -16.78455 -15.87445 -15.46906 -15.01121 -14.76549 -14.58765 -13.89131 -13.70204 -13.40194 -13.24684 -13.22904 -12.78720 -12.63774 -12.17537 -12.03605 -11.78413 -11.69567 -11.57119 -11.16072 -11.01010 -10.99291 -10.83248 -10.79773 -10.65972 -10.56530 -10.46989 -10.36497 -10.31787 -10.18561 -9.85033 -9.57769 -9.28972 -8.83649 -8.57399 -6.87562 -5.68916 -2.96559 3.11834 3.47561 3.52495 3.54563 3.59467 4.64622 4.65854 4.67975 4.79008 5.10819 5.24698 5.25622 5.34627 5.48373 5.53291 5.54007 5.63374 5.66556 5.71334 5.74602 5.77765 5.84695 5.90408 5.94378 5.96246 5.99863 6.05634 6.10417 6.18132 6.22058 6.33326 6.35048 6.40754 6.48847 6.57774 6.61644 6.63937 6.79552 6.88808 7.02135 7.11220 7.75774 7.94509 8.49561 8.71843 9.60769 10.18588 10.52758 11.53960 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.006098 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.617719 B = 4590.464961 C = 6243.925047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.531 6.531 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.124 4.124 16 C -0.121 4.121 17 N -0.720 5.720 18 C -0.233 4.233 19 H 0.066 0.934 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.392 0.608 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 10.672 -13.699 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.371 5.371 9 C 0.297 3.703 10 O -0.407 6.407 11 C -0.174 4.174 12 C -0.094 4.094 13 C -0.152 4.152 14 C -0.165 4.165 15 C -0.162 4.162 16 C -0.158 4.158 17 N -0.361 5.361 18 C -0.364 4.364 19 H 0.084 0.916 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.733 3.267 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.209 1.209 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.225 0.775 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.166 10.212 -13.183 17.457 hybrid contribution -0.339 0.446 0.739 0.927 sum 4.827 10.658 -12.444 17.080 Atomic orbital electron populations 1.22461 0.99633 1.00764 0.99697 1.20211 0.91461 0.95540 0.86586 0.93672 1.22157 0.93960 1.02071 0.98712 1.20984 0.94882 0.80530 0.99676 0.87784 1.22174 1.01429 1.00139 0.98082 1.46010 1.16683 1.11444 1.63007 1.20556 0.81803 0.90203 0.77701 1.90704 1.51042 1.56689 1.42293 1.21846 0.98744 0.94309 1.02537 1.21506 0.94768 0.96152 0.96936 1.22406 0.99412 0.99484 0.93869 1.22536 0.99487 0.95624 0.98872 1.22350 1.00940 0.97560 0.95335 1.22229 1.00787 0.95471 0.97337 1.42391 1.77960 1.10548 1.05251 1.19141 1.36298 0.93621 0.87347 0.91587 1.24683 1.02255 0.95939 0.97899 1.69647 1.51006 1.08624 1.28701 0.86269 0.77192 0.78878 0.84350 1.21909 1.21825 1.20886 0.94768 0.93565 0.92956 0.92196 0.90801 0.92625 0.91914 0.93299 0.77486 0.89632 0.89084 0.90505 0.91666 0.90571 0.91849 0.91803 0.92181 0.91774 0.92012 0.91868 0.78368 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.28 2.84 -67.93 -0.19 3.08 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.35 2.52 -67.93 -0.17 2.18 16 6 H 0.10 2.26 7.06 -51.93 -0.37 1.89 16 7 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 8 N -0.72 -10.49 4.45 -53.80 -0.24 -10.72 16 9 C 0.51 8.25 7.57 -10.98 -0.08 8.17 16 10 O -0.53 -10.93 14.45 5.56 0.08 -10.85 16 11 C -0.13 -1.62 4.83 -27.88 -0.13 -1.75 16 12 C -0.07 -0.94 2.55 -89.50 -0.23 -1.17 16 13 C -0.11 -1.69 5.40 -25.03 -0.14 -1.83 16 14 C -0.13 -1.55 6.91 -24.70 -0.17 -1.72 16 15 C -0.12 -1.27 6.83 -25.08 -0.17 -1.45 16 16 C -0.12 -1.21 6.46 -25.61 -0.17 -1.37 16 17 N -0.72 -17.77 4.49 -53.43 -0.24 -18.01 16 18 C -0.23 -6.49 9.93 -15.06 -0.15 -6.64 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 22 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 4.50 8.60 -40.82 -0.35 4.15 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.04 8.02 -51.93 -0.42 0.62 16 37 H 0.08 1.06 7.95 -51.93 -0.41 0.64 16 38 H 0.06 1.06 7.77 -51.93 -0.40 0.65 16 39 H 0.08 1.33 7.63 -51.93 -0.40 0.93 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.55 7.67 -51.93 -0.40 0.16 16 46 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 47 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -32.42 372.09 -9.12 -41.54 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.92 Total: 11.90 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.11 Total: -9.51 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.25 Total: -56.71 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.42 -9.12 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133572951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.046 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds