Wall clock time and date at job start Tue Mar 31 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.53003 * 109.47060 * 240.00392 * 2 1 3 5 5 C 1.52995 * 109.47112 * 177.21428 * 4 2 1 6 6 H 1.09009 * 109.46878 * 57.71911 * 5 4 2 7 7 C 1.53000 * 109.47244 * 297.72297 * 5 4 2 8 8 N 1.46497 * 109.47296 * 177.71737 * 5 4 2 9 9 C 1.34782 * 120.00186 * 197.76008 * 8 5 4 10 10 O 1.21279 * 119.99677 * 5.34817 * 9 8 5 11 11 C 1.50695 * 119.99968 * 185.35469 * 9 8 5 12 12 C 1.53003 * 109.46771 * 274.92178 * 11 9 8 13 13 C 1.52995 * 109.47359 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.47165 * 59.99884 * 13 12 11 15 15 C 1.52998 * 109.46863 * 300.00036 * 14 13 12 16 16 C 1.52998 * 109.47562 * 154.92618 * 11 9 8 17 17 N 1.46500 * 109.46967 * 120.00166 * 2 1 3 18 18 C 1.36935 * 119.99905 * 268.51382 * 17 2 1 19 19 H 1.08001 * 119.99765 * 354.44360 * 18 17 2 20 20 C 1.38806 * 119.99975 * 174.44859 * 18 17 2 21 21 N 1.31623 * 120.00002 * 5.74474 * 20 18 17 22 22 Si 1.86805 * 120.00208 * 185.74309 * 20 18 17 23 23 H 1.48491 * 109.46978 * 59.99913 * 22 20 18 24 24 H 1.48495 * 109.47095 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46984 * 299.99888 * 22 20 18 26 26 H 1.08999 * 109.47359 * 299.99690 * 1 2 3 27 27 H 1.08998 * 109.47265 * 59.99918 * 1 2 3 28 28 H 1.09004 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46632 * 297.21370 * 4 2 1 30 30 H 1.08999 * 109.47234 * 57.21607 * 4 2 1 31 31 H 1.08995 * 109.47012 * 299.99714 * 7 5 4 32 32 H 1.09000 * 109.47108 * 59.99926 * 7 5 4 33 33 H 1.09002 * 109.46842 * 179.97438 * 7 5 4 34 34 H 0.97000 * 120.00179 * 17.76055 * 8 5 4 35 35 H 1.09000 * 109.47783 * 34.91970 * 11 9 8 36 36 H 1.08996 * 109.47406 * 299.99997 * 12 11 9 37 37 H 1.09004 * 109.47343 * 59.99781 * 12 11 9 38 38 H 1.09000 * 109.47427 * 299.99933 * 13 12 11 39 39 H 1.09003 * 109.47738 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47012 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.46626 * 60.00054 * 14 13 12 42 42 H 1.08996 * 109.47719 * 299.99971 * 15 14 13 43 43 H 1.09001 * 109.46785 * 179.97438 * 15 14 13 44 44 H 1.09003 * 109.46394 * 299.99858 * 16 11 9 45 45 H 1.09000 * 109.47101 * 59.98934 * 16 11 9 46 46 H 0.96996 * 119.99407 * 88.51575 * 17 2 1 47 47 H 0.96999 * 119.99991 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5684 -0.6608 -1.2849 6 1 3.9709 -1.1089 -0.3764 7 6 4.0191 0.7985 -1.3766 8 7 4.0592 -1.3978 -2.4519 9 6 5.3475 -1.7902 -2.5082 10 8 6.0756 -1.6194 -1.5535 11 6 5.8829 -2.4409 -3.7575 12 6 5.5824 -3.9407 -3.7202 13 6 6.1266 -4.6016 -4.9882 14 6 7.6394 -4.3864 -5.0665 15 6 7.9399 -2.8867 -5.1039 16 6 7.3957 -2.2258 -3.8365 17 7 2.0183 -0.6907 1.1962 18 6 2.2755 0.0184 2.3391 19 1 2.2050 1.0961 2.3334 20 6 2.6270 -0.6480 3.5049 21 7 2.8236 -1.9493 3.4854 22 14 2.8211 0.3020 5.1016 23 1 1.5374 0.9665 5.4413 24 1 3.1973 -0.6335 6.1916 25 1 3.8825 1.3282 4.9410 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7180 -1.7622 -1.2247 30 1 1.6365 -0.2369 -2.1386 31 1 3.6166 1.2466 -2.2850 32 1 3.6539 1.3468 -0.5082 33 1 5.1080 0.8415 -1.4015 34 1 3.4572 -1.6035 -3.1841 35 1 5.4067 -1.9966 -4.6315 36 1 6.0587 -4.3851 -2.8463 37 1 4.5047 -4.0940 -3.6639 38 1 5.6507 -4.1574 -5.8624 39 1 5.9129 -5.6702 -4.9615 40 1 8.0270 -4.8569 -5.9701 41 1 8.1152 -4.8307 -4.1924 42 1 7.4640 -2.4423 -5.9780 43 1 9.0176 -2.7334 -5.1593 44 1 7.6097 -1.1573 -3.8630 45 1 7.8719 -2.6701 -2.9625 46 1 2.1594 -1.6501 1.1784 47 1 3.0688 -2.4150 4.3001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133590021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:52 Heat of formation + Delta-G solvation = -87.753636 kcal Electronic energy + Delta-G solvation = -23027.706453 eV Core-core repulsion = 19822.067054 eV Total energy + Delta-G solvation = -3205.639398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24650 -39.00660 -38.07324 -36.05467 -34.15298 -32.59371 -31.66125 -31.11780 -30.27865 -27.63113 -25.76301 -24.92401 -23.48761 -22.72314 -21.32270 -21.00189 -20.46253 -19.28395 -18.09924 -17.13308 -16.75310 -16.40642 -15.90304 -15.58424 -15.35266 -15.20803 -14.99617 -14.86668 -14.71842 -14.08040 -13.75858 -13.59439 -13.50329 -13.22901 -13.11815 -12.99794 -12.89337 -12.72398 -12.50347 -12.33001 -12.22405 -12.08408 -12.03020 -11.81988 -11.58865 -11.52850 -11.46940 -11.34697 -11.00734 -10.90725 -10.53518 -10.01323 -8.96396 -7.91936 -5.17853 1.44771 1.47703 1.53304 1.69671 2.26048 2.57403 3.41887 3.65869 3.75256 3.81467 3.86965 4.01650 4.16199 4.25868 4.29340 4.31672 4.39534 4.46844 4.53649 4.56934 4.61226 4.62678 4.69023 4.74208 4.87067 4.97763 4.98918 5.02551 5.11696 5.12520 5.17395 5.21550 5.25787 5.27626 5.29771 5.37016 5.40454 5.48791 5.54638 5.56556 5.61962 5.67392 6.31088 6.68000 7.36487 7.39085 8.15862 8.36528 9.31674 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.003669 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.314307 B = 7630.688268 C = 8168.354175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.054 0.946 4 C -0.115 4.115 5 C 0.150 3.850 6 H 0.040 0.960 7 C -0.148 4.148 8 N -0.711 5.711 9 C 0.505 3.495 10 O -0.593 6.593 11 C -0.093 4.093 12 C -0.109 4.109 13 C -0.110 4.110 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.104 4.104 17 N -0.733 5.733 18 C -0.232 4.232 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.964 3.036 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.281 1.281 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.415 0.585 35 H 0.123 0.877 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.368 0.632 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 -1.520 -24.699 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.072 0.928 4 C -0.153 4.153 5 C 0.045 3.955 6 H 0.058 0.942 7 C -0.206 4.206 8 N -0.363 5.363 9 C 0.293 3.707 10 O -0.473 6.473 11 C -0.114 4.114 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.148 4.148 16 C -0.142 4.142 17 N -0.373 5.373 18 C -0.364 4.364 19 H 0.092 0.908 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.794 3.206 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.208 1.208 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.252 0.748 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.200 0.800 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.475 -1.217 -23.914 24.196 hybrid contribution 0.116 -0.113 1.620 1.629 sum 3.591 -1.330 -22.294 22.620 Atomic orbital electron populations 1.22289 0.97406 1.00863 1.00920 1.20563 0.92846 0.95595 0.85508 0.92753 1.22004 0.92357 1.01641 0.99313 1.20662 0.94898 0.92020 0.87919 0.94215 1.22028 1.00024 0.95904 1.02625 1.46050 1.10859 1.57075 1.22305 1.21506 0.81977 0.77353 0.89905 1.90715 1.59068 1.57427 1.40107 1.21357 0.97786 0.97366 0.94865 1.21508 1.01773 0.92088 0.99349 1.21510 0.95607 1.00845 0.96793 1.21598 0.96397 0.96075 1.02079 1.21508 1.01070 0.95604 0.96665 1.21366 0.93235 1.00597 0.98984 1.42622 1.78475 1.06967 1.09271 1.19566 1.36729 0.91283 0.88788 0.90754 1.25498 1.03937 0.96490 1.01103 1.69830 1.56141 1.08620 1.27544 0.85335 0.77994 0.77309 0.79949 1.20218 1.22535 1.20780 0.94874 0.90423 0.93978 0.91868 0.87530 0.89875 0.92453 0.94977 0.74803 0.85871 0.94025 0.90475 0.89692 0.90927 0.90139 0.93382 0.90009 0.91382 0.92576 0.93846 0.80036 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 9.52 71.98 0.69 -4.41 16 2 C 0.16 6.08 2.72 44.99 0.12 6.20 16 3 H 0.05 2.05 6.22 -2.39 -0.01 2.03 16 4 C -0.11 -3.34 4.46 30.59 0.14 -3.20 16 5 C 0.15 5.06 2.55 44.99 0.11 5.18 16 6 H 0.04 1.87 7.21 -2.38 -0.02 1.85 16 7 C -0.15 -4.75 9.07 71.98 0.65 -4.10 16 8 N -0.71 -18.77 5.15 -442.54 -2.28 -21.05 16 9 C 0.50 15.48 6.74 87.65 0.59 16.07 16 10 O -0.59 -25.60 15.55 -3.03 -0.05 -25.65 16 11 C -0.09 -1.89 2.52 -11.54 -0.03 -1.92 16 12 C -0.11 -2.03 5.19 30.59 0.16 -1.87 16 13 C -0.11 -1.41 5.92 30.60 0.18 -1.23 16 14 C -0.12 -1.69 5.92 30.60 0.18 -1.51 16 15 C -0.11 -1.61 5.92 30.58 0.18 -1.43 16 16 C -0.10 -2.26 4.73 30.58 0.14 -2.11 16 17 N -0.73 -36.97 4.38 -322.94 -1.42 -38.38 16 18 C -0.23 -13.09 9.92 84.03 0.83 -12.25 16 19 H 0.07 4.03 7.81 -2.91 -0.02 4.00 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 21 N -0.97 -62.00 13.07 21.65 0.28 -61.72 16 22 Si 0.96 48.08 29.56 68.60 2.03 50.10 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 25 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 26 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.03 6.42 -2.39 -0.02 2.02 16 33 H 0.03 1.14 7.79 -2.39 -0.02 1.12 16 34 H 0.41 7.22 8.55 -92.71 -0.79 6.43 16 35 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.04 1.21 7.87 -2.39 -0.02 1.19 16 46 H 0.37 20.45 7.88 -92.71 -0.73 19.72 16 47 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -75.96 368.05 2.40 -73.57 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.59 Total: 33.91 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.42 Total: -10.78 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.41 Total: -121.15 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -75.96 2.40 -73.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133590021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.187 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds