Wall clock time and date at job start Tue Mar 31 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47659 * 2 1 4 4 C 1.53001 * 109.47434 * 120.00444 * 2 1 3 5 5 C 1.53001 * 109.47204 * 184.99751 * 4 2 1 6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2 7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2 8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2 9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 5 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 5 12 12 C 1.53001 * 109.47207 * 299.99218 * 11 9 8 13 13 C 1.52998 * 109.47157 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47306 * 60.00300 * 13 12 11 15 15 C 1.52993 * 109.46873 * 300.00136 * 14 13 12 16 16 C 1.52998 * 109.47592 * 59.99643 * 15 14 13 17 17 N 1.46507 * 109.46619 * 240.00124 * 2 1 3 18 18 C 1.36931 * 119.99852 * 85.00105 * 17 2 1 19 19 H 1.08005 * 120.00247 * 359.97438 * 18 17 2 20 20 C 1.38816 * 120.00272 * 179.97438 * 18 17 2 21 21 N 1.31610 * 120.00526 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99506 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47260 * 89.99753 * 22 20 18 24 24 H 1.48504 * 109.46788 * 209.99795 * 22 20 18 25 25 H 1.48503 * 109.46990 * 329.99320 * 22 20 18 26 26 H 1.09007 * 109.46592 * 299.99564 * 1 2 3 27 27 H 1.08992 * 109.47185 * 59.99485 * 1 2 3 28 28 H 1.09001 * 109.47429 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47061 * 64.99418 * 4 2 1 30 30 H 1.08994 * 109.46820 * 304.99531 * 4 2 1 31 31 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.47091 * 299.99643 * 7 5 4 33 33 H 1.08996 * 109.47098 * 60.00014 * 7 5 4 34 34 H 0.97001 * 119.99790 * 24.99549 * 8 5 4 35 35 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 36 36 H 1.09001 * 109.47406 * 300.00436 * 12 11 9 37 37 H 1.09001 * 109.47038 * 60.00421 * 12 11 9 38 38 H 1.08998 * 109.47370 * 299.99625 * 13 12 11 39 39 H 1.09009 * 109.46771 * 180.02562 * 13 12 11 40 40 H 1.08995 * 109.46891 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.47054 * 60.00027 * 14 13 12 42 42 H 1.09001 * 109.47191 * 299.99807 * 15 14 13 43 43 H 1.09001 * 109.47143 * 179.97438 * 15 14 13 44 44 H 1.09000 * 109.47250 * 179.97438 * 16 15 14 45 45 H 1.09007 * 109.46897 * 60.00287 * 16 15 14 46 46 H 0.97000 * 119.99609 * 264.99961 * 17 2 1 47 47 H 0.97000 * 120.00404 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4385 2.4922 8 7 3.9481 0.7892 1.4923 9 6 5.1592 1.2145 1.0814 10 8 5.9337 0.4350 0.5683 11 6 5.5509 2.6587 1.2598 12 6 4.5682 3.5514 0.4993 13 6 4.9663 5.0176 0.6798 14 6 6.3790 5.2335 0.1335 15 6 7.3617 4.3409 0.8939 16 6 6.9637 2.8747 0.7135 17 7 2.0182 -0.6906 -1.1963 18 6 2.1489 -0.0075 -2.3758 19 1 1.8917 1.0404 -2.4244 20 6 2.6120 -0.6617 -3.5092 21 7 2.7372 -0.0052 -4.6430 22 14 3.0562 -2.4742 -3.4254 23 1 1.8591 -3.2925 -3.7452 24 1 4.1320 -2.7660 -4.4066 25 1 3.5309 -2.8048 -2.0576 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.7517 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 5.1716 -1.3620 2.5378 32 1 3.6548 -1.0596 3.4191 33 1 3.8002 -2.4821 2.3592 34 1 3.3286 1.4127 1.9027 35 1 5.5280 2.9134 2.3193 36 1 4.5912 3.2969 -0.5603 37 1 3.5617 3.3974 0.8882 38 1 4.9435 5.2725 1.7393 39 1 4.2658 5.6536 0.1384 40 1 6.6624 6.2782 0.2618 41 1 6.4017 4.9787 -0.9260 42 1 7.3390 4.5957 1.9535 43 1 8.3682 4.4943 0.5044 44 1 7.6641 2.2387 1.2548 45 1 6.9864 2.6198 -0.3461 46 1 2.2489 -1.6318 -1.1527 47 1 3.0605 -0.4624 -5.4351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133590023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:58 Heat of formation + Delta-G solvation = -63.774366 kcal Electronic energy + Delta-G solvation = -23789.262773 eV Core-core repulsion = 20584.663194 eV Total energy + Delta-G solvation = -3204.599579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01768 -37.86446 -36.68083 -34.51347 -32.23058 -31.54132 -30.69677 -29.98576 -29.16191 -26.39545 -23.86873 -23.22979 -22.53642 -21.14203 -20.29454 -19.77276 -19.54405 -17.64152 -16.88136 -15.98169 -15.31932 -14.86017 -14.53553 -14.17998 -14.12934 -13.93734 -13.75171 -13.59726 -12.94626 -12.67129 -12.55475 -12.43058 -12.29315 -12.20226 -11.97198 -11.93415 -11.66260 -11.28448 -11.14151 -11.08959 -10.89932 -10.64212 -10.62066 -10.45341 -10.37701 -10.24323 -10.08441 -9.92390 -9.52415 -9.28535 -8.86883 -8.67587 -7.20035 -5.70421 -3.04827 3.02638 3.43622 3.46890 3.50941 3.51731 4.66269 4.67440 4.71369 4.75881 5.02333 5.17951 5.22918 5.25047 5.29368 5.37725 5.40981 5.48573 5.52357 5.55929 5.61301 5.62543 5.79812 5.81058 5.85467 5.90634 6.00280 6.03717 6.10264 6.14178 6.20647 6.22700 6.25363 6.28567 6.33899 6.35508 6.45207 6.50693 6.59846 6.79003 6.90642 7.00735 7.85870 8.04623 8.48388 8.63127 9.27177 10.00360 10.19614 11.48200 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.005726 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.608533 B = 4888.646248 C = 5517.635392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.134 4.134 5 C 0.142 3.858 6 H 0.099 0.901 7 C -0.161 4.161 8 N -0.718 5.718 9 C 0.518 3.482 10 O -0.537 6.537 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.100 4.100 17 N -0.745 5.745 18 C -0.236 4.236 19 H 0.087 0.913 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.277 1.277 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 7.282 17.407 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.117 0.883 7 C -0.219 4.219 8 N -0.369 5.369 9 C 0.304 3.696 10 O -0.413 6.413 11 C -0.124 4.124 12 C -0.150 4.150 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.155 4.155 16 C -0.138 4.138 17 N -0.388 5.388 18 C -0.366 4.366 19 H 0.105 0.895 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.712 3.288 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.203 1.203 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.192 0.808 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.805 6.878 16.844 18.588 hybrid contribution -0.095 -1.083 0.077 1.090 sum 3.709 5.795 16.921 18.266 Atomic orbital electron populations 1.22424 0.99048 1.00803 1.00281 1.20191 0.91680 0.95848 0.85515 0.92758 1.22213 0.93980 1.02022 0.99089 1.20974 0.94874 0.80907 0.99504 0.88345 1.22183 1.01582 0.99973 0.98185 1.45974 1.16889 1.11170 1.62837 1.20568 0.81666 0.90021 0.77335 1.90696 1.51144 1.56784 1.42648 1.21311 0.97574 0.92032 1.01449 1.21536 0.97553 0.94140 1.01765 1.21507 0.96775 0.96102 1.00900 1.21571 0.94927 0.99068 1.00491 1.21540 0.98831 0.94948 1.00157 1.21345 0.94173 0.95710 1.02612 1.42773 1.79570 1.09333 1.07145 1.18992 1.36673 0.95407 0.85534 0.89471 1.24627 1.01428 0.97347 0.95624 1.69688 1.52909 1.35496 1.00237 0.86583 0.77949 0.87079 0.77149 1.21306 1.21858 1.20282 0.94404 0.92432 0.93668 0.90887 0.91643 0.92500 0.92998 0.92006 0.77244 0.89253 0.90541 0.91539 0.92170 0.91663 0.92246 0.91597 0.92274 0.91915 0.91575 0.90863 0.80792 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.49 37.16 0.35 -2.41 16 2 C 0.18 3.21 2.84 -67.93 -0.19 3.02 16 3 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.05 16 5 C 0.14 2.22 2.52 -67.93 -0.17 2.05 16 6 H 0.10 2.02 7.05 -51.93 -0.37 1.65 16 7 C -0.16 -2.13 9.49 37.16 0.35 -1.78 16 8 N -0.72 -10.22 4.34 -53.81 -0.23 -10.46 16 9 C 0.52 8.43 7.12 -10.99 -0.08 8.35 16 10 O -0.54 -11.21 15.64 5.55 0.09 -11.12 16 11 C -0.10 -1.28 2.53 -91.77 -0.23 -1.51 16 12 C -0.11 -1.36 5.10 -26.73 -0.14 -1.50 16 13 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 14 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 15 C -0.12 -1.19 5.92 -26.74 -0.16 -1.35 16 16 C -0.10 -1.30 4.49 -26.73 -0.12 -1.42 16 17 N -0.75 -17.34 4.30 -53.42 -0.23 -17.57 16 18 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.94 -29.91 13.97 55.49 0.78 -29.14 16 22 Si 0.88 22.96 27.74 -169.99 -4.71 18.24 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.44 8.02 -40.82 -0.33 4.11 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.74 7.56 -51.93 -0.39 0.34 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 45 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 46 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 47 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -33.61 366.95 -8.76 -42.37 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.91 Total: 10.21 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.07 Total: -8.06 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.31 Total: -57.17 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.61 -8.76 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133590023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.409 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds