Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46936 * 2 1 4 4 C 1.52994 * 109.47356 * 240.00049 * 2 1 3 5 5 C 1.52997 * 109.47404 * 174.99986 * 4 2 1 6 6 H 1.09002 * 109.47153 * 54.99686 * 5 4 2 7 7 C 1.53000 * 109.47060 * 175.00005 * 5 4 2 8 8 N 1.46500 * 109.47007 * 294.99774 * 5 4 2 9 9 C 1.34779 * 119.99793 * 154.99772 * 8 5 4 10 10 O 1.21279 * 120.00185 * 0.02562 * 9 8 5 11 11 C 1.50702 * 119.99614 * 179.97438 * 9 8 5 12 12 C 1.52998 * 109.47376 * 300.00172 * 11 9 8 13 13 C 1.53002 * 109.47053 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46912 * 60.00417 * 13 12 11 15 15 C 1.52998 * 109.46921 * 299.99663 * 14 13 12 16 16 C 1.53000 * 109.46917 * 180.02562 * 11 9 8 17 17 N 1.46498 * 109.47046 * 119.99709 * 2 1 3 18 18 C 1.36933 * 119.99922 * 275.00074 * 17 2 1 19 19 H 1.08001 * 120.00266 * 0.02562 * 18 17 2 20 20 C 1.38814 * 120.00103 * 179.97438 * 18 17 2 21 21 N 1.31622 * 119.99630 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00202 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 90.00238 * 22 20 18 24 24 H 1.48510 * 109.47001 * 210.00252 * 22 20 18 25 25 H 1.48494 * 109.47242 * 330.00043 * 22 20 18 26 26 H 1.08994 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47459 * 300.00021 * 1 2 3 28 28 H 1.09006 * 109.47194 * 60.00269 * 1 2 3 29 29 H 1.09000 * 109.47017 * 54.99628 * 4 2 1 30 30 H 1.09008 * 109.46970 * 294.99937 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 7 5 4 32 32 H 1.08992 * 109.47399 * 59.99823 * 7 5 4 33 33 H 1.09004 * 109.46724 * 180.02562 * 7 5 4 34 34 H 0.97004 * 120.00223 * 334.99863 * 8 5 4 35 35 H 1.09002 * 109.46795 * 60.00420 * 11 9 8 36 36 H 1.08993 * 109.47315 * 300.00091 * 12 11 9 37 37 H 1.08999 * 109.46966 * 59.99899 * 12 11 9 38 38 H 1.08993 * 109.47232 * 300.00262 * 13 12 11 39 39 H 1.09002 * 109.47099 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.46909 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.47245 * 59.99128 * 14 13 12 42 42 H 1.09002 * 109.47361 * 300.00402 * 15 14 13 43 43 H 1.09000 * 109.47480 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47125 * 300.00244 * 16 11 9 45 45 H 1.09002 * 109.47464 * 60.00088 * 16 11 9 46 46 H 0.96992 * 120.00062 * 95.00014 * 17 2 1 47 47 H 0.97007 * 120.00007 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 1 3.9954 -0.9922 -0.3867 7 6 4.0851 -1.4382 -2.4924 8 7 3.9479 0.7894 -1.4924 9 6 5.1612 1.2136 -1.0867 10 8 5.9359 0.4340 -0.5739 11 6 5.5554 2.6564 -1.2711 12 6 5.5194 3.0087 -2.7596 13 6 5.9191 4.4737 -2.9467 14 6 7.3340 4.6894 -2.4057 15 6 7.3700 4.3371 -0.9172 16 6 6.9706 2.8714 -0.7307 17 7 2.0183 -0.6905 1.1962 18 6 2.1491 -0.0074 2.3757 19 1 1.8918 1.0404 2.4243 20 6 2.6112 -0.6618 3.5093 21 7 2.9243 -1.9389 3.4502 22 14 2.7903 0.2704 5.1182 23 1 1.5225 0.1802 5.8862 24 1 3.8945 -0.3235 5.9141 25 1 3.0963 1.6952 4.8333 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 1.6054 -0.2617 -2.1369 30 1 1.7517 -1.7715 -1.2055 31 1 3.8001 -2.4819 -2.3594 32 1 3.6546 -1.0594 -3.4192 33 1 5.1715 -1.3617 -2.5380 34 1 3.3284 1.4129 -1.9029 35 1 4.8582 3.2956 -0.7295 36 1 6.2166 2.3695 -3.3012 37 1 4.5114 2.8553 -3.1449 38 1 5.2217 5.1126 -2.4052 39 1 5.8939 4.7245 -4.0072 40 1 7.6189 5.7330 -2.5394 41 1 8.0314 4.0504 -2.9472 42 1 6.6724 4.9761 -0.3756 43 1 8.3780 4.4903 -0.5318 44 1 6.9966 2.6203 0.3296 45 1 7.6676 2.2322 -1.2727 46 1 2.2490 -1.6316 1.1527 47 1 3.2476 -2.3961 4.2423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133590024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = -67.510637 kcal Electronic energy + Delta-G solvation = -23529.148240 eV Core-core repulsion = 20324.386644 eV Total energy + Delta-G solvation = -3204.761596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99101 -37.85715 -36.55729 -34.37992 -32.22471 -31.50370 -30.77503 -29.90732 -28.54755 -26.27706 -23.89871 -23.50828 -22.63854 -21.10692 -20.25459 -19.64810 -19.57801 -17.28596 -16.79494 -15.93887 -15.20225 -14.79146 -14.64687 -14.24274 -14.16840 -13.92761 -13.73575 -13.33023 -13.01834 -12.87627 -12.52634 -12.32851 -12.27433 -12.09454 -11.88466 -11.69537 -11.54180 -11.30442 -11.22022 -10.97777 -10.79951 -10.70558 -10.56490 -10.48980 -10.35152 -10.18842 -10.16337 -9.84896 -9.57555 -9.23715 -8.83466 -8.58392 -6.87441 -5.68686 -2.96425 3.09201 3.47951 3.52836 3.54923 3.56521 4.59095 4.62891 4.65778 4.66721 5.11249 5.13032 5.14982 5.27160 5.33687 5.39508 5.45434 5.47767 5.51707 5.54349 5.66214 5.73428 5.74558 5.89666 5.94421 5.97897 5.99867 6.00585 6.05722 6.06580 6.14754 6.18209 6.32171 6.33337 6.40708 6.42079 6.49125 6.61645 6.79206 6.88584 7.01590 7.11367 7.76019 7.93334 8.49723 8.69901 9.60951 10.18778 10.52937 11.54148 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.005219 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.280049 B = 5364.065147 C = 6428.220327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.717 5.717 9 C 0.517 3.483 10 O -0.535 6.535 11 C -0.106 4.106 12 C -0.108 4.108 13 C -0.117 4.117 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.099 4.099 17 N -0.720 5.720 18 C -0.234 4.234 19 H 0.066 0.934 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.392 0.608 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 11.042 -16.366 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.368 5.368 9 C 0.303 3.697 10 O -0.410 6.410 11 C -0.128 4.128 12 C -0.146 4.146 13 C -0.155 4.155 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.137 4.137 17 N -0.362 5.362 18 C -0.365 4.365 19 H 0.084 0.916 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.734 3.266 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.209 1.209 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.285 10.576 -15.843 19.525 hybrid contribution -0.308 0.423 0.815 0.969 sum 3.977 11.000 -15.028 19.043 Atomic orbital electron populations 1.22460 0.99609 1.00771 0.99702 1.20214 0.91481 0.95542 0.86586 0.93677 1.22158 0.93916 1.02097 0.98721 1.21000 0.94920 0.80500 0.99713 0.87787 1.22172 1.01429 1.00136 0.98065 1.45990 1.16597 1.11413 1.62790 1.20496 0.81792 0.89929 0.77501 1.90709 1.51174 1.56583 1.42581 1.21343 0.99570 0.94012 0.97863 1.21506 1.01794 0.96930 0.94356 1.21529 0.97067 0.96145 1.00763 1.21559 0.96989 1.00941 0.96336 1.21575 1.01444 0.96596 0.96139 1.21338 0.94447 0.95803 1.02143 1.42388 1.77964 1.10555 1.05259 1.19149 1.36359 0.93645 0.87343 0.91561 1.24689 1.02241 0.95938 0.97921 1.69650 1.50987 1.08637 1.28712 0.86257 0.77195 0.78847 0.84302 1.21884 1.21815 1.20925 0.93559 0.92958 0.94755 0.92175 0.90763 0.91888 0.93263 0.92634 0.77446 0.88714 0.91555 0.91619 0.91751 0.91918 0.92206 0.92028 0.91922 0.91852 0.91003 0.91388 0.78361 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.02 4.29 -26.74 -0.11 -2.13 16 5 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 6 H 0.10 2.28 7.06 -51.93 -0.37 1.91 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 8 N -0.72 -10.60 4.34 -53.81 -0.23 -10.83 16 9 C 0.52 8.59 7.12 -10.98 -0.08 8.51 16 10 O -0.53 -11.43 15.64 5.56 0.09 -11.35 16 11 C -0.11 -1.34 2.53 -91.77 -0.23 -1.57 16 12 C -0.11 -1.04 5.10 -26.73 -0.14 -1.17 16 13 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 14 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 15 C -0.12 -1.19 5.93 -26.70 -0.16 -1.35 16 16 C -0.10 -1.28 4.49 -26.70 -0.12 -1.40 16 17 N -0.72 -17.88 4.49 -53.43 -0.24 -18.12 16 18 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 22 Si 0.90 23.12 29.55 -169.99 -5.02 18.10 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.39 4.63 8.02 -40.82 -0.33 4.30 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 45 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 46 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 47 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -32.80 370.08 -9.12 -41.92 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -8.95 Total: 10.52 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.06 Total: -7.75 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.25 Total: -57.02 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.80 -9.12 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133590024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.591 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds