Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.53008 * 109.46698 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46772 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61291 * 274.13584 * 13 12 11 15 15 C 1.53951 * 87.02030 * 220.04966 * 14 13 12 16 16 C 1.53775 * 87.11090 * 25.36106 * 15 14 13 17 17 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 28 28 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 29 29 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 30 30 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 31 31 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 32 32 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 33 33 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 34 34 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 35 35 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 36 36 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 37 37 H 1.09004 * 109.46904 * 299.99462 * 12 11 9 38 38 H 1.08997 * 109.47241 * 60.00272 * 12 11 9 39 39 H 1.09000 * 112.85475 * 45.32946 * 13 12 11 40 40 H 1.09000 * 113.61476 * 334.57029 * 14 13 12 41 41 H 1.08996 * 113.61673 * 105.46960 * 14 13 12 42 42 H 1.09000 * 113.53888 * 270.80995 * 15 14 13 43 43 H 1.09004 * 113.66747 * 139.93273 * 15 14 13 44 44 H 1.09000 * 113.61516 * 220.09039 * 16 15 14 45 45 H 1.09009 * 113.69321 * 89.20051 * 16 15 14 46 46 H 0.97004 * 119.99747 * 95.00774 * 17 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3598 -1.1494 1.7512 13 6 7.9752 -1.9031 2.9319 14 6 7.5508 -1.3518 4.3033 15 6 9.0045 -1.5804 4.7554 16 6 9.4033 -1.4483 3.2762 17 7 2.0183 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0403 2.4244 20 6 2.6122 -0.6617 3.5091 21 7 2.9205 -1.9400 3.4511 22 14 2.7899 0.2699 5.1184 23 1 4.1540 0.8503 5.2062 24 1 1.7835 1.3605 5.1727 25 1 2.5735 -0.6603 6.2554 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 3.7724 -2.2740 -2.6699 32 1 3.6264 -0.6885 -3.4657 33 1 5.1509 -1.1482 -2.6697 34 1 3.6648 -2.0583 0.2386 35 1 5.3354 -1.6299 2.3092 36 1 6.0816 -2.7879 1.1820 37 1 8.0052 -1.2522 0.8789 38 1 7.2584 -0.0945 2.0062 39 1 7.8705 -2.9846 2.8447 40 1 7.2605 -0.3014 4.2809 41 1 6.8272 -1.9808 4.8219 42 1 9.1810 -2.5737 5.1682 43 1 9.3971 -0.7829 5.3864 44 1 10.1732 -2.1551 2.9667 45 1 9.6210 -0.4247 2.9710 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134035158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -29.871446 kcal Electronic energy + Delta-G solvation = -23842.797530 eV Core-core repulsion = 20639.668092 eV Total energy + Delta-G solvation = -3203.129438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.42738 -38.47783 -36.85273 -34.32864 -32.57811 -32.10324 -30.40941 -28.27840 -26.41668 -25.94198 -25.24389 -23.49088 -22.17758 -20.68517 -20.31302 -19.42384 -19.10036 -17.38761 -16.36260 -15.79910 -15.29570 -15.07056 -14.75984 -14.30281 -14.08245 -13.59406 -13.46195 -13.13316 -13.10501 -12.73939 -12.34078 -12.16697 -12.15139 -11.95812 -11.74429 -11.60729 -11.50009 -11.06302 -10.96969 -10.75269 -10.53927 -10.46899 -10.38537 -10.26540 -10.10958 -10.02723 -9.89959 -9.75706 -9.17592 -9.06452 -8.94955 -8.34587 -7.00043 -6.09911 -3.08792 3.40377 3.52070 3.54690 3.68242 3.87469 4.65476 4.87297 4.91880 4.99151 5.06257 5.15138 5.34451 5.42106 5.49426 5.58326 5.60647 5.63579 5.80057 5.81045 5.88701 5.94292 5.94897 5.99412 6.03493 6.06049 6.08825 6.13612 6.18571 6.20793 6.32431 6.38536 6.42462 6.47440 6.52970 6.56959 6.63197 6.79890 6.81223 6.86098 6.99980 7.19440 7.82386 8.20955 8.72794 8.96045 9.20291 10.05130 10.21548 11.36552 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.006886 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.142145 B = 4065.319830 C = 5905.927600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.702 5.702 9 C 0.527 3.473 10 O -0.566 6.566 11 C -0.145 4.145 12 C -0.086 4.086 13 C -0.108 4.108 14 C -0.136 4.136 15 C -0.144 4.144 16 C -0.137 4.137 17 N -0.727 5.727 18 C -0.316 4.316 19 H 0.061 0.939 20 C -0.042 4.042 21 N -0.942 5.942 22 Si 1.072 2.928 23 H -0.295 1.295 24 H -0.298 1.298 25 H -0.289 1.289 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.398 0.602 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.361 0.639 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -1.706 -5.669 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.173 4.173 5 C 0.044 3.956 6 H 0.099 0.901 7 C -0.220 4.220 8 N -0.354 5.354 9 C 0.315 3.685 10 O -0.446 6.446 11 C -0.185 4.185 12 C -0.124 4.124 13 C -0.126 4.126 14 C -0.173 4.173 15 C -0.182 4.182 16 C -0.174 4.174 17 N -0.371 5.371 18 C -0.448 4.448 19 H 0.079 0.921 20 C -0.239 4.239 21 N -0.588 5.588 22 Si 0.904 3.096 23 H -0.223 1.223 24 H -0.225 1.225 25 H -0.215 1.215 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.195 0.805 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.427 -0.956 -4.410 7.853 hybrid contribution -0.904 -0.425 -1.378 1.702 sum 5.522 -1.381 -5.789 8.118 Atomic orbital electron populations 1.22407 0.99307 1.00600 0.99992 1.20203 0.91586 0.95673 0.85984 0.93410 1.22216 0.94240 1.01407 0.99405 1.20766 0.92345 0.97330 0.85151 0.90061 1.22198 1.01734 1.00697 0.97323 1.45998 1.18165 1.37512 1.33761 1.20610 0.80967 0.83303 0.83648 1.90592 1.62248 1.31547 1.60218 1.21732 0.98509 0.99386 0.98890 1.21235 0.94381 0.99747 0.97032 1.22533 0.95344 0.99815 0.94939 1.22993 0.96008 1.01904 0.96421 1.22847 0.97663 1.01348 0.96306 1.22928 0.96708 1.01393 0.96412 1.42460 1.79075 1.09268 1.06315 1.20033 1.40799 0.94941 0.88986 0.92133 1.25513 0.99848 0.97511 1.01010 1.70927 1.52222 1.07865 1.27812 0.83314 0.75951 0.74297 0.76020 1.22283 1.22484 1.21510 0.93769 0.92843 0.94503 0.91967 0.90861 0.92940 0.92237 0.92446 0.76538 0.86268 0.90313 0.92167 0.91462 0.89574 0.90091 0.90983 0.90613 0.91961 0.92107 0.90318 0.80462 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 2 C 0.18 3.32 2.89 -67.93 -0.20 3.13 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -2.05 4.43 -26.73 -0.12 -2.17 16 5 C 0.15 2.46 2.58 -67.93 -0.17 2.29 16 6 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 8 N -0.70 -12.69 3.80 -53.81 -0.20 -12.90 16 9 C 0.53 10.49 7.79 -10.98 -0.09 10.40 16 10 O -0.57 -12.68 15.64 5.56 0.09 -12.60 16 11 C -0.15 -2.64 5.70 -27.88 -0.16 -2.80 16 12 C -0.09 -1.44 4.33 -26.73 -0.12 -1.56 16 13 C -0.11 -1.58 3.64 -89.81 -0.33 -1.91 16 14 C -0.14 -2.11 7.65 -25.83 -0.20 -2.31 16 15 C -0.14 -1.83 8.09 -25.83 -0.21 -2.04 16 16 C -0.14 -1.74 7.64 -25.92 -0.20 -1.94 16 17 N -0.73 -16.37 3.84 -53.43 -0.21 -16.58 16 18 C -0.32 -8.30 9.93 -15.06 -0.15 -8.45 16 19 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 20 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 21 N -0.94 -25.72 13.44 55.49 0.75 -24.98 16 22 Si 1.07 25.25 29.92 -169.99 -5.09 20.17 16 23 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 7.16 6.51 -40.82 -0.27 6.89 16 35 H 0.12 2.54 7.88 -51.93 -0.41 2.13 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.99 8.10 -51.93 -0.42 0.56 16 38 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.00 8.10 -51.92 -0.42 0.58 16 46 H 0.36 8.12 4.54 -40.82 -0.19 7.93 16 47 H 0.25 6.62 6.77 -40.82 -0.28 6.34 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -28.80 372.22 -9.11 -37.90 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -8.73 Total: 16.33 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.32 Total: -12.96 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.34 Total: -54.45 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.09 Total: 20.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.80 -9.11 -37.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134035158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.033 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds