Wall clock time and date at job start Tue Mar 31 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.36939 * 120.00530 * 204.99728 * 8 5 4 10 10 H 1.07999 * 119.99437 * 0.02562 * 9 8 5 11 11 C 1.38808 * 120.00276 * 179.97438 * 9 8 5 12 12 N 1.31624 * 120.00057 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00117 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46817 * 60.00345 * 13 11 9 15 15 H 1.48498 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47235 * 300.00470 * 13 11 9 17 17 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 18 18 C 1.34777 * 119.99688 * 274.99602 * 17 2 1 19 19 O 1.21279 * 119.99974 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99799 * 180.02562 * 18 17 2 21 21 C 1.53004 * 109.46982 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47151 * 180.02562 * 21 20 18 23 23 C 1.53778 * 113.61101 * 274.13668 * 22 21 20 24 24 C 1.53959 * 87.01841 * 220.04667 * 23 22 21 25 25 C 1.53776 * 113.61518 * 176.52972 * 22 21 20 26 26 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 27 27 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 32 32 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 33 33 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 34 34 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 35 35 H 0.97002 * 119.99591 * 179.97438 * 12 11 9 36 36 H 0.96993 * 119.99992 * 94.99462 * 17 2 1 37 37 H 1.08995 * 109.47366 * 299.99979 * 20 18 17 38 38 H 1.08996 * 109.47113 * 60.00496 * 20 18 17 39 39 H 1.08995 * 109.46885 * 300.00068 * 21 20 18 40 40 H 1.08997 * 109.47269 * 59.99750 * 21 20 18 41 41 H 1.08999 * 112.84685 * 45.32828 * 22 21 20 42 42 H 1.08999 * 113.61598 * 334.56622 * 23 22 21 43 43 H 1.09005 * 113.61820 * 105.47222 * 23 22 21 44 44 H 1.09002 * 113.53439 * 270.81388 * 24 23 22 45 45 H 1.08996 * 113.66772 * 139.93259 * 24 23 22 46 46 H 1.09000 * 113.61165 * 254.52934 * 25 22 21 47 47 H 1.08999 * 113.61298 * 25.34655 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9386 -0.1791 -0.1881 11 6 5.9520 -1.6685 1.3527 12 7 5.2885 -2.6512 1.9241 13 14 7.6442 -1.1926 1.9847 14 1 7.6254 0.2235 2.4318 15 1 8.0102 -2.0679 3.1271 16 1 8.6425 -1.3552 0.8974 17 7 2.0184 -0.6907 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1582 2.4117 20 6 2.6500 -0.7288 3.5874 21 6 2.7008 0.2542 4.7589 22 6 3.2120 -0.4668 6.0078 23 6 2.1067 -1.1841 6.8006 24 6 2.8144 -0.6927 8.0765 25 6 3.3813 0.4562 7.2260 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 3.6262 -0.6886 -3.4658 32 1 5.1508 -1.1485 -2.6699 33 1 3.7721 -2.2741 -2.6701 34 1 3.6647 -2.0585 0.2385 35 1 5.6785 -3.1285 2.6731 36 1 2.2490 -1.6319 1.1525 37 1 1.9778 -1.5510 3.8325 38 1 3.6493 -1.1205 3.3978 39 1 3.3728 1.0767 4.5140 40 1 1.7014 0.6456 4.9483 41 1 4.0826 -1.0918 5.8091 42 1 1.1161 -0.7526 6.6570 43 1 2.1184 -2.2678 6.6835 44 1 3.5758 -1.3806 8.4443 45 1 2.1293 -0.3614 8.8569 46 1 4.4206 0.6950 7.4518 47 1 2.7409 1.3378 7.1982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134035159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:25 Heat of formation + Delta-G solvation = -31.122823 kcal Electronic energy + Delta-G solvation = -23663.887026 eV Core-core repulsion = 20460.703325 eV Total energy + Delta-G solvation = -3203.183702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.34479 -38.51849 -36.72365 -34.12867 -32.40826 -31.99731 -30.38973 -28.51834 -26.34397 -25.92973 -25.37088 -23.64575 -22.16589 -20.58746 -20.16864 -19.30675 -19.14623 -17.16549 -16.29083 -15.70621 -15.47206 -14.81694 -14.74190 -14.30119 -13.88622 -13.67010 -13.51794 -12.94819 -12.74814 -12.63014 -12.33289 -12.28930 -12.12139 -11.93006 -11.71542 -11.63285 -11.50187 -10.99340 -10.96270 -10.81174 -10.71538 -10.49471 -10.34896 -10.31743 -10.25570 -9.96469 -9.88308 -9.82916 -9.66481 -8.97102 -8.93461 -8.23161 -6.93280 -5.79821 -3.05459 3.42971 3.47218 3.49761 3.51551 3.99836 4.59004 4.80087 4.83534 4.92694 5.03417 5.14963 5.43585 5.49531 5.56672 5.59032 5.66893 5.72979 5.74166 5.83607 5.88269 5.91143 5.97529 6.00440 6.04425 6.04489 6.09700 6.14738 6.19448 6.27242 6.34060 6.40167 6.42993 6.48552 6.60214 6.63578 6.67631 6.73630 6.87919 6.91086 7.08011 7.32627 7.70073 8.34520 8.41134 9.08919 9.51138 10.05793 10.41694 11.42414 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.006445 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.408405 B = 4343.505631 C = 6131.074060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.226 4.226 10 H 0.066 0.934 11 C -0.010 4.010 12 N -0.933 5.933 13 Si 0.898 3.102 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.289 1.289 17 N -0.699 5.699 18 C 0.529 3.471 19 O -0.572 6.572 20 C -0.142 4.142 21 C -0.087 4.087 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.254 0.746 36 H 0.404 0.596 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 1.467 3.191 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.060 3.940 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.357 4.357 10 H 0.084 0.916 11 C -0.206 4.206 12 N -0.583 5.583 13 Si 0.729 3.271 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.216 1.216 17 N -0.351 5.351 18 C 0.316 3.684 19 O -0.452 6.452 20 C -0.182 4.182 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.175 4.175 24 C -0.181 4.181 25 C -0.176 4.176 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.213 0.787 35 H 0.064 0.936 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.656 2.358 3.261 9.546 hybrid contribution 1.108 -0.567 0.350 1.293 sum -7.548 1.791 3.611 8.557 Atomic orbital electron populations 1.22200 0.96562 1.01453 1.01746 1.20757 0.92302 0.97683 0.84910 0.90168 1.22196 0.97742 1.00554 0.96669 1.20273 0.89767 0.95818 0.88176 0.93522 1.22425 1.01485 1.00337 0.98120 1.42442 1.18640 1.39982 1.34816 1.19156 0.93248 1.12930 1.10386 0.91626 1.24562 0.98284 0.98723 0.99001 1.69586 1.37961 1.24613 1.26138 0.86402 0.84858 0.77600 0.78196 1.21422 1.21752 1.21601 1.45996 1.66051 1.14360 1.08732 1.20548 0.75961 0.86893 0.84967 1.90585 1.52131 1.16548 1.85925 1.21677 1.05201 0.98839 0.92443 1.21239 1.01205 0.97545 0.92524 1.22580 0.98898 0.97648 0.93659 1.23003 0.98170 1.00273 0.96035 1.22830 1.00015 0.98597 0.96613 1.22931 1.00981 0.97174 0.96516 0.92530 0.92344 0.92932 0.91830 0.91022 0.94623 0.92916 0.93633 0.78662 0.93617 0.75853 0.90312 0.86302 0.91543 0.92130 0.88985 0.90379 0.91664 0.90495 0.91999 0.91840 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 2 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16 3 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16 5 C 0.17 3.18 2.89 -67.93 -0.20 2.98 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 C -0.16 -2.83 9.49 37.16 0.35 -2.47 16 8 N -0.72 -16.08 3.84 -53.43 -0.21 -16.28 16 9 C -0.23 -5.85 9.93 -15.06 -0.15 -6.00 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -24.71 12.78 55.49 0.71 -24.01 16 13 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 N -0.70 -12.74 3.80 -53.80 -0.20 -12.94 16 18 C 0.53 10.54 7.79 -10.99 -0.09 10.45 16 19 O -0.57 -12.81 15.64 5.56 0.09 -12.73 16 20 C -0.14 -2.57 5.70 -27.88 -0.16 -2.73 16 21 C -0.09 -1.45 4.33 -26.73 -0.12 -1.57 16 22 C -0.11 -1.58 3.64 -89.81 -0.33 -1.90 16 23 C -0.14 -1.71 7.65 -25.83 -0.20 -1.90 16 24 C -0.14 -1.62 8.09 -25.83 -0.21 -1.83 16 25 C -0.14 -1.75 7.65 -25.92 -0.20 -1.95 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.38 8.68 5.70 -40.82 -0.23 8.45 16 35 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.40 7.45 6.51 -40.82 -0.27 7.18 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.12 2.50 7.86 -51.93 -0.41 2.09 16 39 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 0.99 7.83 -51.93 -0.41 0.58 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -27.75 373.87 -9.17 -36.92 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -8.84 Total: 15.77 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.32 Total: -9.05 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.30 Total: -53.23 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.75 -9.17 -36.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134035159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.798 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds