Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.36939 * 120.00530 * 204.99728 * 8 5 4 10 10 H 1.07999 * 119.99437 * 0.02562 * 9 8 5 11 11 C 1.38808 * 120.00276 * 179.97438 * 9 8 5 12 12 N 1.31624 * 120.00057 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00117 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46817 * 60.00345 * 13 11 9 15 15 H 1.48498 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47235 * 300.00470 * 13 11 9 17 17 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 18 18 C 1.34777 * 119.99688 * 274.99602 * 17 2 1 19 19 O 1.21279 * 119.99974 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99799 * 180.02562 * 18 17 2 21 21 C 1.53004 * 109.46982 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47151 * 180.02562 * 21 20 18 23 23 C 1.53778 * 113.61101 * 274.13668 * 22 21 20 24 24 C 1.53959 * 87.01841 * 220.04667 * 23 22 21 25 25 C 1.53776 * 113.61518 * 176.52972 * 22 21 20 26 26 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 27 27 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 32 32 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 33 33 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 34 34 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 35 35 H 0.97002 * 119.99591 * 179.97438 * 12 11 9 36 36 H 0.96993 * 119.99992 * 94.99462 * 17 2 1 37 37 H 1.08995 * 109.47366 * 299.99979 * 20 18 17 38 38 H 1.08996 * 109.47113 * 60.00496 * 20 18 17 39 39 H 1.08995 * 109.46885 * 300.00068 * 21 20 18 40 40 H 1.08997 * 109.47269 * 59.99750 * 21 20 18 41 41 H 1.08999 * 112.84685 * 45.32828 * 22 21 20 42 42 H 1.08999 * 113.61598 * 334.56622 * 23 22 21 43 43 H 1.09005 * 113.61820 * 105.47222 * 23 22 21 44 44 H 1.09002 * 113.53439 * 270.81388 * 24 23 22 45 45 H 1.08996 * 113.66772 * 139.93259 * 24 23 22 46 46 H 1.09000 * 113.61165 * 254.52934 * 25 22 21 47 47 H 1.08999 * 113.61298 * 25.34655 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9386 -0.1791 -0.1881 11 6 5.9520 -1.6685 1.3527 12 7 5.2885 -2.6512 1.9241 13 14 7.6442 -1.1926 1.9847 14 1 7.6254 0.2235 2.4318 15 1 8.0102 -2.0679 3.1271 16 1 8.6425 -1.3552 0.8974 17 7 2.0184 -0.6907 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1582 2.4117 20 6 2.6500 -0.7288 3.5874 21 6 2.7008 0.2542 4.7589 22 6 3.2120 -0.4668 6.0078 23 6 2.1067 -1.1841 6.8006 24 6 2.8144 -0.6927 8.0765 25 6 3.3813 0.4562 7.2260 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 3.6262 -0.6886 -3.4658 32 1 5.1508 -1.1485 -2.6699 33 1 3.7721 -2.2741 -2.6701 34 1 3.6647 -2.0585 0.2385 35 1 5.6785 -3.1285 2.6731 36 1 2.2490 -1.6319 1.1525 37 1 1.9778 -1.5510 3.8325 38 1 3.6493 -1.1205 3.3978 39 1 3.3728 1.0767 4.5140 40 1 1.7014 0.6456 4.9483 41 1 4.0826 -1.0918 5.8091 42 1 1.1161 -0.7526 6.6570 43 1 2.1184 -2.2678 6.6835 44 1 3.5758 -1.3806 8.4443 45 1 2.1293 -0.3614 8.8569 46 1 4.4206 0.6950 7.4518 47 1 2.7409 1.3378 7.1982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134035159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = -45.152658 kcal Electronic energy + Delta-G solvation = -23664.495406 eV Core-core repulsion = 20460.703325 eV Total energy + Delta-G solvation = -3203.792081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82176 -39.65889 -38.26899 -35.76771 -34.06836 -33.54000 -31.87278 -30.20793 -27.62388 -27.18175 -26.39683 -25.55908 -23.40625 -21.96440 -21.66016 -20.81944 -20.25309 -19.09203 -17.80037 -17.15660 -16.68363 -16.59503 -16.10522 -15.59835 -15.53121 -15.33775 -14.90333 -14.31283 -14.29050 -14.05678 -13.63437 -13.50476 -13.32746 -13.28013 -13.21587 -12.88208 -12.79516 -12.75755 -12.58922 -12.27975 -12.20588 -12.16687 -11.84101 -11.70641 -11.58356 -11.40801 -11.39419 -11.09515 -10.97749 -10.85501 -10.52242 -9.75996 -8.80609 -7.83963 -5.06270 1.45956 1.48542 1.51887 1.91928 2.55846 2.61601 3.48826 3.71684 3.78209 3.79421 3.87589 4.00164 4.02405 4.17184 4.20111 4.36654 4.40326 4.47753 4.57844 4.70095 4.72067 4.81755 4.84614 4.87927 4.89953 4.91905 4.94322 4.99145 5.06983 5.09621 5.10901 5.14782 5.17626 5.23244 5.34940 5.38009 5.42988 5.49085 5.60660 5.64023 5.67568 5.87413 6.38660 6.82359 7.47330 7.53095 8.19740 8.47409 9.36799 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.006445 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.408405 B = 4343.505631 C = 6131.074060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.051 0.949 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.154 4.154 8 N -0.719 5.719 9 C -0.229 4.229 10 H 0.054 0.946 11 C -0.049 4.049 12 N -0.941 5.941 13 Si 0.940 3.060 14 H -0.295 1.295 15 H -0.292 1.292 16 H -0.289 1.289 17 N -0.694 5.694 18 C 0.519 3.481 19 O -0.602 6.602 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.139 4.139 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.376 0.624 35 H 0.249 0.751 36 H 0.404 0.596 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 0.874 2.849 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.070 0.930 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.213 4.213 8 N -0.362 5.362 9 C -0.362 4.362 10 H 0.072 0.928 11 C -0.243 4.243 12 N -0.592 5.592 13 Si 0.772 3.228 14 H -0.223 1.223 15 H -0.219 1.219 16 H -0.216 1.216 17 N -0.344 5.344 18 C 0.307 3.693 19 O -0.485 6.485 20 C -0.173 4.173 21 C -0.116 4.116 22 C -0.137 4.137 23 C -0.170 4.170 24 C -0.169 4.169 25 C -0.176 4.176 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.210 0.790 35 H 0.059 0.941 36 H 0.241 0.759 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.173 1.759 2.876 10.717 hybrid contribution 1.583 -0.333 0.363 1.658 sum -8.590 1.426 3.239 9.290 Atomic orbital electron populations 1.22088 0.93957 1.02616 1.02150 1.20911 0.94279 0.96113 0.84782 0.93038 1.22111 0.94808 1.01502 0.97296 1.20481 0.92197 0.94288 0.87689 0.95562 1.22273 1.00039 1.00836 0.98195 1.42490 1.17675 1.40163 1.35889 1.19259 0.94494 1.12238 1.10202 0.92838 1.24980 1.00306 0.99382 0.99654 1.69653 1.38357 1.24987 1.26161 0.85737 0.82794 0.76704 0.77567 1.22259 1.21851 1.21606 1.46056 1.65236 1.14238 1.08919 1.20891 0.75776 0.86656 0.85928 1.90560 1.53710 1.17744 1.86468 1.21602 1.03745 0.99553 0.92402 1.21156 1.00772 0.96588 0.93111 1.22583 0.99343 0.98423 0.93350 1.22993 0.97727 1.00312 0.95925 1.22793 1.00102 0.97628 0.96422 1.22956 1.01301 0.97613 0.95767 0.94340 0.89757 0.91310 0.90547 0.87535 0.91277 0.95293 0.93295 0.78957 0.94138 0.75874 0.88256 0.89163 0.94278 0.91723 0.90589 0.89693 0.91301 0.89934 0.90156 0.91884 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 2 C 0.14 4.59 2.57 44.99 0.12 4.71 16 3 H 0.05 1.95 7.58 -2.39 -0.02 1.94 16 4 C -0.12 -3.33 4.43 30.59 0.14 -3.19 16 5 C 0.16 5.90 2.89 44.99 0.13 6.03 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 8 N -0.72 -32.31 3.84 -322.95 -1.24 -33.55 16 9 C -0.23 -12.06 9.93 84.03 0.83 -11.22 16 10 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 11 C -0.05 -2.63 5.50 84.86 0.47 -2.16 16 12 N -0.94 -50.32 12.78 21.65 0.28 -50.05 16 13 Si 0.94 45.30 29.55 68.60 2.03 47.32 16 14 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 17 N -0.69 -25.20 3.80 -442.53 -1.68 -26.88 16 18 C 0.52 21.12 7.79 87.66 0.68 21.80 16 19 O -0.60 -27.72 15.64 -3.03 -0.05 -27.77 16 20 C -0.13 -4.93 5.70 29.85 0.17 -4.76 16 21 C -0.08 -2.67 4.33 30.60 0.13 -2.54 16 22 C -0.12 -3.42 3.64 -10.27 -0.04 -3.46 16 23 C -0.13 -3.09 7.65 31.18 0.24 -2.85 16 24 C -0.13 -2.73 8.09 31.18 0.25 -2.48 16 25 C -0.14 -3.40 7.65 31.12 0.24 -3.17 16 26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.38 17.16 5.70 -92.71 -0.53 16.63 16 35 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 36 H 0.40 14.75 6.51 -92.71 -0.60 14.15 16 37 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.09 3.93 7.86 -2.39 -0.02 3.92 16 39 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.06 2.13 7.83 -2.39 -0.02 2.11 16 41 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.08 1.88 7.92 -2.39 -0.02 1.86 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -60.72 373.87 3.85 -56.88 By element: Atomic # 1 Polarization: 45.00 SS G_CDS: -0.21 Total: 44.79 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 4.72 Total: -10.75 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -2.65 Total: -110.48 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -60.72 3.85 -56.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134035159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.722 kcal (2) G-P(sol) polarization free energy of solvation -60.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds