Wall clock time and date at job start Tue Mar 31 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47139 * 2 1 4 4 C 1.53000 * 109.46708 * 119.99780 * 2 1 3 5 5 C 1.53003 * 109.46911 * 184.99912 * 4 2 1 6 6 H 1.09001 * 109.47318 * 305.00010 * 5 4 2 7 7 C 1.53006 * 109.47319 * 184.99976 * 5 4 2 8 8 N 1.46506 * 109.47240 * 64.99767 * 5 4 2 9 9 C 1.34773 * 120.00154 * 204.99872 * 8 5 4 10 10 O 1.21280 * 120.00148 * 0.02562 * 9 8 5 11 11 C 1.50697 * 120.00085 * 180.02562 * 9 8 5 12 12 C 1.52998 * 109.47286 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46991 * 179.97438 * 12 11 9 14 14 C 1.53786 * 113.61503 * 85.86302 * 13 12 11 15 15 C 1.54049 * 86.98426 * 140.01654 * 14 13 12 16 16 C 1.53781 * 113.61337 * 183.47096 * 13 12 11 17 17 N 1.46496 * 109.47126 * 239.99253 * 2 1 3 18 18 C 1.36946 * 119.99701 * 85.00406 * 17 2 1 19 19 H 1.08006 * 119.99748 * 0.02562 * 18 17 2 20 20 C 1.38807 * 120.00234 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99868 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00210 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46912 * 59.99752 * 22 20 18 24 24 H 1.48499 * 109.47140 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47111 * 299.99667 * 22 20 18 26 26 H 1.08999 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46943 * 300.00158 * 1 2 3 28 28 H 1.08998 * 109.46818 * 60.00202 * 1 2 3 29 29 H 1.08999 * 109.47390 * 65.00354 * 4 2 1 30 30 H 1.09001 * 109.47387 * 304.99315 * 4 2 1 31 31 H 1.09001 * 109.46954 * 300.00257 * 7 5 4 32 32 H 1.08998 * 109.46651 * 59.99716 * 7 5 4 33 33 H 1.09004 * 109.46905 * 180.02562 * 7 5 4 34 34 H 0.97001 * 119.99321 * 25.00495 * 8 5 4 35 35 H 1.09000 * 109.46992 * 60.00177 * 11 9 8 36 36 H 1.09006 * 109.46974 * 300.00340 * 11 9 8 37 37 H 1.09000 * 109.47147 * 60.00043 * 12 11 9 38 38 H 1.08997 * 109.47118 * 299.99864 * 12 11 9 39 39 H 1.09002 * 112.85017 * 314.66684 * 13 12 11 40 40 H 1.08992 * 113.61675 * 254.61398 * 14 13 12 41 41 H 1.09000 * 113.60973 * 25.51686 * 14 13 12 42 42 H 1.09005 * 113.62125 * 220.02158 * 15 14 13 43 43 H 1.09003 * 113.61268 * 89.11946 * 15 14 13 44 44 H 1.08999 * 113.61567 * 334.48261 * 16 13 12 45 45 H 1.09000 * 113.61379 * 105.30384 * 16 13 12 46 46 H 0.96994 * 120.00423 * 265.00268 * 17 2 1 47 47 H 0.97000 * 119.99871 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 1 3.9954 -0.9923 0.3869 7 6 4.0851 -1.4383 2.4926 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9357 0.4340 0.5733 11 6 5.5556 2.6562 1.2710 12 6 6.9703 2.8714 0.7296 13 6 7.3704 4.3364 0.9161 14 6 7.9719 4.6395 2.2987 15 6 8.9777 5.5515 1.5710 16 6 8.7486 4.6785 0.3259 17 7 2.0184 -0.6907 -1.1960 18 6 2.1492 -0.0076 -2.3757 19 1 1.8928 1.0404 -2.4242 20 6 2.6114 -0.6622 -3.5092 21 7 2.9244 -1.9393 -3.4500 22 14 2.7892 0.2695 -5.1185 23 1 3.7446 1.3919 -4.9377 24 1 3.2982 -0.6490 -6.1685 25 1 1.4666 0.8062 -5.5285 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7516 -1.7715 1.2057 30 1 1.6054 -0.2616 2.1370 31 1 3.6545 -1.0593 3.4195 32 1 3.8000 -2.4819 2.3597 33 1 5.1715 -1.3610 2.5388 34 1 3.3285 1.4129 1.9028 35 1 5.5299 2.9073 2.3314 36 1 4.8584 3.2955 0.7293 37 1 6.9955 2.6205 -0.3309 38 1 7.6677 2.2322 1.2709 39 1 6.5841 5.0309 0.6203 40 1 7.2937 5.1765 2.9617 41 1 8.4324 3.7733 2.7738 42 1 9.9909 5.4886 1.9680 43 1 8.6309 6.5783 1.4542 44 1 9.4211 3.8231 0.2627 45 1 8.6970 5.2459 -0.6034 46 1 2.2490 -1.6318 -1.1524 47 1 3.2477 -2.3966 -4.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134035160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:27 Heat of formation + Delta-G solvation = -37.148553 kcal Electronic energy + Delta-G solvation = -22848.724135 eV Core-core repulsion = 19645.279138 eV Total energy + Delta-G solvation = -3203.444997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66363 -38.78517 -36.77966 -34.37828 -32.72303 -32.04249 -30.48367 -28.55510 -26.46352 -26.18795 -25.66609 -23.57768 -22.43470 -20.86099 -19.98871 -19.64468 -19.51306 -17.24671 -16.64996 -15.85666 -15.75267 -15.20084 -14.70262 -14.54851 -13.95708 -13.83947 -13.65350 -13.17185 -12.90220 -12.75580 -12.65292 -12.56136 -12.18464 -12.04243 -11.81457 -11.69611 -11.56872 -11.37183 -11.01398 -10.93710 -10.77794 -10.66063 -10.56803 -10.38091 -10.28138 -10.20466 -10.16545 -9.85849 -9.57150 -9.32972 -8.82965 -8.58694 -6.87420 -5.68427 -2.96319 3.10568 3.48654 3.53055 3.53999 3.58447 4.48467 4.53532 4.62132 4.66248 4.73340 5.01529 5.17386 5.21819 5.29409 5.47445 5.48541 5.53502 5.59767 5.63611 5.65356 5.70967 5.71386 5.75543 5.76584 5.84430 5.94501 5.99823 6.03682 6.06145 6.18183 6.21295 6.33366 6.34721 6.40802 6.47532 6.49106 6.61741 6.79343 6.88708 7.01664 7.11465 7.75595 7.93522 8.50055 8.70391 9.61112 10.18932 10.53055 11.54357 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.004576 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.290605 B = 6117.371754 C = 7528.688239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.536 6.536 11 C -0.138 4.138 12 C -0.094 4.094 13 C -0.111 4.111 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.138 4.138 17 N -0.720 5.720 18 C -0.235 4.235 19 H 0.066 0.934 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 11.532 15.298 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.371 5.371 9 C 0.297 3.703 10 O -0.412 6.412 11 C -0.178 4.178 12 C -0.132 4.132 13 C -0.129 4.129 14 C -0.176 4.176 15 C -0.181 4.181 16 C -0.176 4.176 17 N -0.362 5.362 18 C -0.366 4.366 19 H 0.084 0.916 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.869 11.060 14.769 19.362 hybrid contribution -0.317 0.474 -0.768 0.957 sum 5.552 11.534 14.001 18.971 Atomic orbital electron populations 1.22463 0.99626 1.00771 0.99706 1.20211 0.91470 0.95535 0.86574 0.93671 1.22160 0.93918 1.02094 0.98730 1.21001 0.94925 0.80532 0.99708 0.87786 1.22176 1.01427 1.00151 0.98068 1.46008 1.16660 1.11465 1.62919 1.20606 0.81794 0.90276 0.77632 1.90714 1.51156 1.56793 1.42560 1.21647 0.99190 0.94054 1.02892 1.21312 0.94695 0.94648 1.02521 1.22591 0.96816 0.97013 0.96513 1.23042 0.98438 0.99709 0.96386 1.22857 0.99441 0.98383 0.97456 1.22933 0.97310 0.99835 0.97489 1.42386 1.77983 1.10548 1.05267 1.19110 1.36526 0.93613 0.87369 0.91602 1.24687 1.02203 0.95927 0.97920 1.69639 1.50899 1.08620 1.28860 0.86334 0.77621 0.78714 0.83918 1.21386 1.21723 1.21433 0.93562 0.94758 0.92945 0.90776 0.92167 0.93276 0.91879 0.92631 0.77423 0.89557 0.89164 0.90847 0.91299 0.89292 0.91762 0.90138 0.91762 0.90447 0.90024 0.91616 0.78362 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 5 C 0.14 2.36 2.52 -67.92 -0.17 2.19 16 6 H 0.10 2.28 7.05 -51.93 -0.37 1.91 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 8 N -0.72 -10.57 4.45 -53.80 -0.24 -10.81 16 9 C 0.51 8.38 7.79 -10.99 -0.09 8.30 16 10 O -0.54 -11.39 15.64 5.56 0.09 -11.30 16 11 C -0.14 -1.64 5.70 -27.89 -0.16 -1.80 16 12 C -0.09 -1.17 4.33 -26.73 -0.12 -1.28 16 13 C -0.11 -1.10 3.64 -89.80 -0.33 -1.42 16 14 C -0.14 -1.19 7.65 -25.77 -0.20 -1.38 16 15 C -0.14 -1.18 8.09 -25.78 -0.21 -1.39 16 16 C -0.14 -1.32 7.64 -25.92 -0.20 -1.51 16 17 N -0.72 -17.90 4.49 -53.42 -0.24 -18.14 16 18 C -0.23 -6.59 9.93 -15.06 -0.15 -6.74 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 22 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.39 4.52 8.60 -40.82 -0.35 4.17 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.07 0.90 7.83 -51.93 -0.41 0.50 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.71 7.92 -51.93 -0.41 0.29 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -32.98 378.64 -9.27 -42.25 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -8.97 Total: 11.31 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.31 Total: -8.99 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.25 Total: -57.04 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.98 -9.27 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134035160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.104 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds