Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 C 1.52999 * 109.46976 * 239.99808 * 2 1 3 5 5 C 1.53004 * 109.46735 * 175.00006 * 4 2 1 6 6 H 1.08997 * 109.47451 * 55.00507 * 5 4 2 7 7 C 1.53005 * 109.46705 * 175.00021 * 5 4 2 8 8 N 1.46494 * 109.46982 * 294.99676 * 5 4 2 9 9 C 1.34784 * 119.99635 * 155.00372 * 8 5 4 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 5 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 5 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47274 * 179.97438 * 12 11 9 14 14 C 1.53778 * 113.61468 * 274.13857 * 13 12 11 15 15 C 1.53961 * 87.01465 * 220.04841 * 14 13 12 16 16 C 1.53770 * 87.11446 * 25.36273 * 15 14 13 17 17 N 1.46501 * 109.46985 * 119.99894 * 2 1 3 18 18 C 1.36942 * 119.99743 * 274.99731 * 17 2 1 19 19 H 1.07995 * 119.99992 * 0.02562 * 18 17 2 20 20 C 1.38810 * 119.99855 * 180.02562 * 18 17 2 21 21 N 1.31619 * 120.00016 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00113 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47561 * 89.99777 * 22 20 18 24 24 H 1.48500 * 109.47534 * 210.00233 * 22 20 18 25 25 H 1.48506 * 109.47135 * 329.99981 * 22 20 18 26 26 H 1.09001 * 109.47295 * 299.99927 * 1 2 3 27 27 H 1.08995 * 109.47298 * 59.99932 * 1 2 3 28 28 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47226 * 54.99872 * 4 2 1 30 30 H 1.09001 * 109.46785 * 294.99783 * 4 2 1 31 31 H 1.08996 * 109.47503 * 59.99963 * 7 5 4 32 32 H 1.08997 * 109.47041 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46855 * 299.99723 * 7 5 4 34 34 H 0.96995 * 120.00292 * 335.27805 * 8 5 4 35 35 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 36 36 H 1.08997 * 109.47392 * 59.99562 * 11 9 8 37 37 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 38 38 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 39 39 H 1.09001 * 112.84394 * 45.33736 * 13 12 11 40 40 H 1.08997 * 113.61101 * 334.56299 * 14 13 12 41 41 H 1.08996 * 113.61425 * 105.47315 * 14 13 12 42 42 H 1.09007 * 113.53253 * 270.80920 * 15 14 13 43 43 H 1.09004 * 113.66356 * 139.93597 * 15 14 13 44 44 H 1.09005 * 113.61681 * 220.09525 * 16 15 14 45 45 H 1.08999 * 113.69282 * 89.19873 * 16 15 14 46 46 H 0.96999 * 120.00398 * 95.00514 * 17 2 1 47 47 H 0.96999 * 120.00364 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0851 -1.4384 -2.4924 8 7 3.9479 0.7893 -1.4925 9 6 5.1612 1.2135 -1.0867 10 8 5.9356 0.4341 -0.5732 11 6 5.5551 2.6565 -1.2702 12 6 6.9703 2.8715 -0.7301 13 6 7.3704 4.3364 -0.9169 14 6 7.9706 4.6395 -2.2999 15 6 8.9782 5.5496 -1.5741 16 6 8.7493 4.6783 -0.3279 17 7 2.0183 -0.6906 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8919 1.0404 2.4243 20 6 2.6123 -0.6615 3.5091 21 7 2.7385 -0.0048 4.6427 22 14 3.0578 -2.4737 3.4250 23 1 4.4906 -2.6149 3.0610 24 1 2.8187 -3.1042 4.7480 25 1 2.2183 -3.1427 2.3988 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -0.2618 -2.1370 30 1 1.7516 -1.7716 -1.2054 31 1 3.6546 -1.0595 -3.4193 32 1 5.1714 -1.3618 -2.5381 33 1 3.8001 -2.4820 -2.3593 34 1 3.3269 1.4136 -1.8992 35 1 5.5290 2.9083 -2.3304 36 1 4.8579 3.2952 -0.7279 37 1 6.9968 2.6196 0.3301 38 1 7.6672 2.2328 -1.2728 39 1 6.5845 5.0309 -0.6201 40 1 8.4292 3.7730 -2.7762 41 1 7.2923 5.1781 -2.9617 42 1 8.6320 6.5768 -1.4583 43 1 9.9911 5.4855 -1.9717 44 1 8.6986 5.2480 0.6000 45 1 9.4207 3.8221 -0.2628 46 1 2.2491 -1.6317 1.1527 47 1 3.0618 -0.4620 5.4347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134035161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -33.509762 kcal Electronic energy + Delta-G solvation = -22899.202440 eV Core-core repulsion = 19695.915233 eV Total energy + Delta-G solvation = -3203.287207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.72143 -38.80746 -36.94564 -34.52490 -32.74614 -32.06202 -30.63358 -29.19780 -26.52267 -26.26272 -25.65689 -23.30439 -22.44096 -20.92505 -20.08658 -19.78050 -19.49972 -17.62409 -16.75173 -15.93244 -15.78873 -15.24115 -14.71633 -14.62982 -14.14211 -13.90001 -13.62285 -13.20659 -12.95011 -12.76837 -12.62034 -12.54998 -12.39663 -12.19482 -11.96431 -11.87688 -11.69587 -11.37729 -11.19102 -10.95792 -10.87698 -10.64746 -10.63329 -10.46484 -10.28505 -10.25738 -10.15721 -9.92699 -9.52474 -9.39746 -8.86710 -8.68350 -7.20168 -5.70579 -3.05182 3.04466 3.43101 3.47257 3.50947 3.52223 4.49676 4.54814 4.62851 4.66325 4.74884 4.95316 5.08065 5.18405 5.26151 5.30221 5.35390 5.49555 5.56303 5.59562 5.62146 5.64682 5.71097 5.71744 5.77102 5.79777 5.84788 5.86443 5.90624 6.03351 6.04411 6.20663 6.22257 6.27890 6.34151 6.36220 6.45089 6.48337 6.58995 6.78783 6.90166 7.00764 7.85538 8.04613 8.48338 8.63144 9.27064 10.00183 10.19332 11.48092 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.004360 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.775505 B = 6420.452846 C = 7316.347772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.134 4.134 5 C 0.142 3.858 6 H 0.098 0.902 7 C -0.161 4.161 8 N -0.720 5.720 9 C 0.513 3.487 10 O -0.538 6.538 11 C -0.137 4.137 12 C -0.094 4.094 13 C -0.111 4.111 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.138 4.138 17 N -0.745 5.745 18 C -0.238 4.238 19 H 0.087 0.913 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 7.357 -18.257 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.116 0.884 7 C -0.219 4.219 8 N -0.371 5.371 9 C 0.299 3.701 10 O -0.414 6.414 11 C -0.178 4.178 12 C -0.132 4.132 13 C -0.129 4.129 14 C -0.176 4.176 15 C -0.181 4.181 16 C -0.176 4.176 17 N -0.389 5.389 18 C -0.368 4.368 19 H 0.105 0.895 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.192 0.808 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.192 6.957 -17.695 19.996 hybrid contribution -0.153 -1.020 -0.052 1.033 sum 6.039 5.937 -17.747 19.663 Atomic orbital electron populations 1.22428 0.99072 1.00804 1.00283 1.20188 0.91677 0.95839 0.85532 0.92756 1.22214 0.93971 1.02034 0.99084 1.20964 0.94861 0.80966 0.99455 0.88419 1.22186 1.01588 0.99972 0.98190 1.45986 1.16710 1.11213 1.63208 1.20642 0.81668 0.90371 0.77399 1.90702 1.51240 1.56862 1.42611 1.21645 0.99317 0.93861 1.02933 1.21315 0.94576 0.94706 1.02587 1.22587 0.96869 0.96992 0.96458 1.23027 0.98452 0.99705 0.96411 1.22840 0.99399 0.98427 0.97468 1.22930 0.97272 0.99825 0.97534 1.42777 1.79681 1.09226 1.07174 1.19001 1.36714 0.95339 0.85716 0.89471 1.24626 1.01387 0.97369 0.95592 1.69694 1.52853 1.35517 1.00286 0.86601 0.78699 0.86936 0.76631 1.20929 1.21887 1.20407 0.92450 0.94383 0.93671 0.91605 0.90882 0.92991 0.92485 0.92000 0.77207 0.89530 0.88962 0.90751 0.91382 0.89218 0.90196 0.91768 0.90425 0.91781 0.91545 0.90051 0.80786 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.18 3.23 2.84 -67.93 -0.19 3.04 16 3 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.20 2.52 -67.93 -0.17 2.03 16 6 H 0.10 1.98 7.05 -51.93 -0.37 1.61 16 7 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 8 N -0.72 -10.11 4.45 -53.80 -0.24 -10.35 16 9 C 0.51 8.20 7.79 -10.98 -0.09 8.11 16 10 O -0.54 -11.12 15.64 5.56 0.09 -11.03 16 11 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 12 C -0.09 -1.17 4.33 -26.73 -0.12 -1.28 16 13 C -0.11 -1.10 3.64 -89.81 -0.33 -1.43 16 14 C -0.14 -1.19 7.65 -25.83 -0.20 -1.39 16 15 C -0.14 -1.19 8.09 -25.83 -0.21 -1.40 16 16 C -0.14 -1.33 7.65 -25.92 -0.20 -1.53 16 17 N -0.75 -17.47 4.30 -53.43 -0.23 -17.70 16 18 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.94 -30.03 13.97 55.49 0.78 -29.25 16 22 Si 0.88 22.95 27.74 -169.99 -4.71 18.23 16 23 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 25 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.39 4.30 8.60 -40.82 -0.35 3.95 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 46 H 0.36 8.45 5.66 -40.82 -0.23 8.22 16 47 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -34.09 375.50 -8.91 -43.00 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.93 Total: 10.16 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.32 Total: -8.71 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.31 Total: -57.31 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.09 -8.91 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134035161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.489 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds