Wall clock time and date at job start Tue Mar 31 2020 05:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 H 1.08990 * 109.47170 * 54.99895 * 5 4 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 5 4 2 8 8 N 1.46506 * 109.46901 * 294.99627 * 5 4 2 9 9 C 1.34777 * 119.99688 * 155.00173 * 8 5 4 10 10 O 1.21279 * 119.99974 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99799 * 180.02562 * 9 8 5 12 12 C 1.53777 * 113.61389 * 279.13660 * 11 9 8 13 13 C 1.53954 * 87.01969 * 220.04768 * 12 11 9 14 14 C 1.52998 * 113.53944 * 270.81188 * 13 12 11 15 15 C 1.53007 * 113.74450 * 139.94369 * 13 12 11 16 16 C 1.53777 * 87.11066 * 25.36719 * 13 12 11 17 17 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 18 18 C 1.36935 * 120.00357 * 275.00133 * 17 2 1 19 19 H 1.08001 * 119.99995 * 0.02562 * 18 17 2 20 20 C 1.38812 * 120.00332 * 179.97438 * 18 17 2 21 21 N 1.31628 * 119.99614 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46964 * 90.00032 * 22 20 18 24 24 H 1.48495 * 109.46942 * 210.00103 * 22 20 18 25 25 H 1.48502 * 109.47114 * 330.00123 * 22 20 18 26 26 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 28 28 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 1.08994 * 109.47359 * 299.99610 * 7 5 4 32 32 H 1.09000 * 109.47312 * 60.00037 * 7 5 4 33 33 H 1.09004 * 109.46964 * 179.97438 * 7 5 4 34 34 H 0.96993 * 119.99992 * 335.00033 * 8 5 4 35 35 H 1.09001 * 112.84856 * 50.33759 * 11 9 8 36 36 H 1.09000 * 113.61738 * 334.56798 * 12 11 9 37 37 H 1.09002 * 113.61546 * 105.47418 * 12 11 9 38 38 H 1.09000 * 109.47236 * 157.49503 * 14 13 12 39 39 H 1.08994 * 109.47374 * 277.49428 * 14 13 12 40 40 H 1.09001 * 109.47193 * 37.49371 * 14 13 12 41 41 H 1.08999 * 109.46774 * 322.41033 * 15 13 12 42 42 H 1.08999 * 109.47018 * 82.39917 * 15 13 12 43 43 H 1.08997 * 109.47095 * 202.40539 * 15 13 12 44 44 H 1.09002 * 113.61455 * 220.09081 * 16 13 12 45 45 H 1.09000 * 113.61825 * 89.18799 * 16 13 12 46 46 H 0.97006 * 119.99491 * 95.00433 * 17 2 1 47 47 H 0.96998 * 119.99521 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 1 3.9953 -0.9921 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9358 0.4341 -0.5739 11 6 5.5549 2.6567 -1.2700 12 6 6.0417 2.9866 -2.6909 13 6 7.1162 3.8699 -2.0311 14 6 6.6620 5.3119 -1.7961 15 6 8.4864 3.7812 -2.7062 16 6 6.9817 2.9716 -0.7903 17 7 2.0183 -0.6905 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8918 1.0404 2.4244 20 6 2.6113 -0.6618 3.5094 21 7 2.9243 -1.9390 3.4503 22 14 2.7890 0.2699 5.1186 23 1 1.5210 0.1786 5.8860 24 1 3.8932 -0.3234 5.9147 25 1 3.0940 1.6952 4.8343 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 3.8002 -2.4818 -2.3594 32 1 3.6546 -1.0593 -3.4193 33 1 5.1715 -1.3609 -2.5385 34 1 3.3284 1.4129 -1.9028 35 1 4.8042 3.3515 -0.8933 36 1 6.4494 2.1273 -3.2233 37 1 5.3170 3.5469 -3.2817 38 1 7.2642 5.7581 -1.0047 39 1 6.7857 5.8860 -2.7143 40 1 5.6125 5.3189 -1.5019 41 1 8.6680 2.7552 -3.0262 42 1 8.5076 4.4413 -3.5734 43 1 9.2596 4.0839 -2.0001 44 1 7.0146 3.5198 0.1513 45 1 7.6469 2.1082 -0.8020 46 1 2.2490 -1.6317 1.1527 47 1 3.2470 -2.3963 4.2425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134256270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:34 Heat of formation + Delta-G solvation = -32.339137 kcal Electronic energy + Delta-G solvation = -23348.583381 eV Core-core repulsion = 20145.346935 eV Total energy + Delta-G solvation = -3203.236445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44090 -38.43436 -36.58052 -34.34639 -32.13045 -31.30346 -30.11809 -28.54924 -27.58618 -26.28676 -25.75214 -24.22810 -23.52638 -20.91972 -19.92139 -19.64101 -18.30786 -17.29781 -16.83338 -15.82760 -15.28386 -14.73374 -14.58970 -14.23329 -13.99389 -13.88256 -13.59887 -13.28756 -12.95615 -12.82289 -12.68684 -12.59132 -12.10219 -11.98064 -11.93077 -11.69665 -11.68033 -11.58828 -11.15900 -10.94249 -10.86115 -10.79283 -10.55906 -10.41552 -10.31712 -10.18158 -10.16799 -9.84664 -9.57219 -9.23320 -8.83130 -8.58203 -6.87119 -5.68381 -2.96119 3.06344 3.48277 3.53142 3.55257 3.60243 4.32667 4.49933 4.63740 4.66464 4.70882 5.04078 5.16371 5.33241 5.37676 5.47897 5.48199 5.53993 5.54995 5.61495 5.67324 5.68879 5.74527 5.76687 5.81939 5.88225 5.94680 5.99811 6.01444 6.06107 6.09895 6.18471 6.28233 6.33539 6.40619 6.44790 6.49488 6.61834 6.79446 6.89071 7.02172 7.11656 7.76337 7.95015 8.50078 8.71041 9.61265 10.19034 10.53195 11.54490 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.004955 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.402223 B = 5649.351486 C = 6673.057713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.716 5.716 9 C 0.523 3.477 10 O -0.535 6.535 11 C -0.136 4.136 12 C -0.113 4.113 13 C -0.091 4.091 14 C -0.128 4.128 15 C -0.134 4.134 16 C -0.107 4.107 17 N -0.720 5.720 18 C -0.234 4.234 19 H 0.066 0.934 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 10.981 -16.497 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.366 5.366 9 C 0.309 3.691 10 O -0.411 6.411 11 C -0.158 4.158 12 C -0.151 4.151 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.192 4.192 16 C -0.145 4.145 17 N -0.362 5.362 18 C -0.365 4.365 19 H 0.084 0.916 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.734 3.266 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.209 1.209 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.976 10.518 -15.974 19.762 hybrid contribution -0.355 0.417 0.837 1.000 sum 4.621 10.934 -15.137 19.236 Atomic orbital electron populations 1.22459 0.99612 1.00771 0.99704 1.20215 0.91476 0.95548 0.86579 0.93669 1.22157 0.93911 1.02087 0.98726 1.21003 0.94932 0.80537 0.99690 0.87804 1.22173 1.01402 1.00146 0.98082 1.45980 1.16544 1.11411 1.62711 1.20322 0.81719 0.89711 0.77384 1.90700 1.51225 1.56503 1.42653 1.22705 0.99368 0.94494 0.99188 1.23013 0.98049 0.99536 0.94474 1.21831 0.95396 0.94882 0.97046 1.21604 1.01324 0.94082 1.01544 1.21712 0.95737 1.01733 0.99969 1.22936 0.94878 0.99520 0.97178 1.42394 1.77966 1.10556 1.05266 1.19151 1.36342 0.93649 0.87346 0.91560 1.24690 1.02233 0.95944 0.97927 1.69652 1.51023 1.08632 1.28698 0.86251 0.77185 0.78845 0.84291 1.21887 1.21819 1.20923 0.92957 0.94751 0.93559 0.92165 0.90775 0.91884 0.93262 0.92663 0.77426 0.87233 0.89809 0.90949 0.92270 0.92506 0.92279 0.92471 0.92797 0.92492 0.91091 0.88697 0.78363 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.49 37.15 0.35 -2.57 16 2 C 0.17 3.30 2.84 -67.93 -0.19 3.11 16 3 H 0.05 0.89 7.56 -51.92 -0.39 0.50 16 4 C -0.13 -2.03 4.29 -26.73 -0.11 -2.14 16 5 C 0.14 2.37 2.52 -67.93 -0.17 2.20 16 6 H 0.10 2.29 7.05 -51.93 -0.37 1.92 16 7 C -0.16 -2.27 9.48 37.16 0.35 -1.91 16 8 N -0.72 -10.67 4.45 -53.80 -0.24 -10.91 16 9 C 0.52 8.74 7.32 -10.99 -0.08 8.66 16 10 O -0.53 -11.48 15.57 5.56 0.09 -11.39 16 11 C -0.14 -1.72 3.79 -90.96 -0.34 -2.06 16 12 C -0.11 -1.12 6.76 -25.83 -0.17 -1.30 16 13 C -0.09 -0.88 1.39 -153.60 -0.21 -1.10 16 14 C -0.13 -1.06 9.07 37.16 0.34 -0.73 16 15 C -0.13 -1.18 9.20 37.16 0.34 -0.84 16 16 C -0.11 -1.35 6.55 -25.92 -0.17 -1.52 16 17 N -0.72 -17.95 4.49 -53.43 -0.24 -18.19 16 18 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 22 Si 0.90 23.17 29.55 -169.99 -5.02 18.14 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.39 4.67 8.60 -40.82 -0.35 4.32 16 35 H 0.11 1.25 7.66 -51.93 -0.40 0.86 16 36 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.48 7.34 -51.93 -0.38 0.10 16 41 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 45 H 0.09 1.37 7.41 -51.93 -0.38 0.99 16 46 H 0.38 10.25 7.80 -40.82 -0.32 9.94 16 47 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -32.98 375.92 -8.23 -41.21 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -8.88 Total: 10.98 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.32 Total: -7.38 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.25 Total: -57.22 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.98 -8.23 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134256270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.871 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds