Wall clock time and date at job start Tue Mar 31 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 C 1.53004 * 109.47083 * 119.99972 * 2 1 3 5 5 C 1.53001 * 109.46597 * 184.99970 * 4 2 1 6 6 H 1.09001 * 109.47358 * 304.99607 * 5 4 2 7 7 C 1.53006 * 109.46741 * 185.00235 * 5 4 2 8 8 N 1.46501 * 109.47289 * 65.00393 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99636 * 8 5 4 10 10 O 1.21284 * 120.00263 * 359.97438 * 9 8 5 11 11 C 1.50699 * 119.99946 * 180.02562 * 9 8 5 12 12 C 1.53782 * 113.61038 * 279.13313 * 11 9 8 13 13 C 1.53962 * 87.01822 * 220.04695 * 12 11 9 14 14 C 1.52994 * 113.53792 * 270.81297 * 13 12 11 15 15 C 1.52999 * 113.74076 * 139.94676 * 13 12 11 16 16 C 1.53784 * 113.61303 * 181.52753 * 11 9 8 17 17 N 1.46493 * 109.47225 * 240.00321 * 2 1 3 18 18 C 1.36936 * 120.00314 * 84.99627 * 17 2 1 19 19 H 1.08001 * 120.00159 * 0.02562 * 18 17 2 20 20 C 1.38811 * 119.99842 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 179.72505 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09003 * 109.47054 * 299.99754 * 1 2 3 27 27 H 1.09002 * 109.47269 * 59.99514 * 1 2 3 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 30 30 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 31 31 H 1.09002 * 109.47467 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.46682 * 299.99787 * 7 5 4 33 33 H 1.08996 * 109.47103 * 59.99595 * 7 5 4 34 34 H 0.96996 * 120.00462 * 24.99717 * 8 5 4 35 35 H 1.09000 * 112.85243 * 50.33377 * 11 9 8 36 36 H 1.08994 * 113.61519 * 334.57000 * 12 11 9 37 37 H 1.09002 * 113.60904 * 105.47428 * 12 11 9 38 38 H 1.09003 * 109.47327 * 157.49567 * 14 13 12 39 39 H 1.09000 * 109.47262 * 277.49443 * 14 13 12 40 40 H 1.08999 * 109.47432 * 37.49789 * 14 13 12 41 41 H 1.09004 * 109.46748 * 322.40311 * 15 13 12 42 42 H 1.09003 * 109.47330 * 82.39959 * 15 13 12 43 43 H 1.08999 * 109.47483 * 202.40516 * 15 13 12 44 44 H 1.08997 * 113.61263 * 254.52499 * 16 11 9 45 45 H 1.09001 * 113.61689 * 25.43459 * 16 11 9 46 46 H 0.97000 * 120.00040 * 264.99759 * 17 2 1 47 47 H 0.96999 * 119.99889 * 180.27497 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4383 2.4924 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9360 0.4340 0.5739 11 6 5.5555 2.6563 1.2711 12 6 4.9931 3.5919 0.1879 13 6 6.3551 4.3093 0.2140 14 6 6.4266 5.4478 1.2336 15 6 6.8623 4.7186 -1.1702 16 6 6.9538 2.9876 0.7235 17 7 2.0183 -0.6905 -1.1961 18 6 2.1491 -0.0074 -2.3757 19 1 1.8926 1.0406 -2.4242 20 6 2.6113 -0.6619 -3.5092 21 7 2.7318 -0.0066 -4.6443 22 14 3.0543 -2.4747 -3.4257 23 1 4.4886 -2.6177 -3.0685 24 1 2.2186 -3.1415 -2.3951 25 1 2.8080 -3.1059 -4.7471 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -0.2617 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 5.1715 -1.3611 2.5386 32 1 3.6546 -1.0593 3.4193 33 1 3.8001 -2.4819 2.3594 34 1 3.3285 1.4129 1.9028 35 1 5.3884 3.0143 2.2870 36 1 4.7821 3.0897 -0.7562 37 1 4.1655 4.2116 0.5331 38 1 7.4682 5.6404 1.4908 39 1 5.9859 6.3477 0.8047 40 1 5.8767 5.1664 2.1316 41 1 6.6064 3.9451 -1.8943 42 1 6.3971 5.6596 -1.4641 43 1 7.9448 4.8428 -1.1385 44 1 7.7068 3.1201 1.5003 45 1 7.2799 2.3199 -0.0740 46 1 2.2491 -1.6317 -1.1526 47 1 3.0510 -0.4649 -5.4374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134256274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:39 Heat of formation + Delta-G solvation = -28.662749 kcal Electronic energy + Delta-G solvation = -23641.606588 eV Core-core repulsion = 20438.529563 eV Total energy + Delta-G solvation = -3203.077025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40455 -38.46423 -36.72614 -34.48523 -32.14694 -31.31433 -30.17393 -29.17909 -27.44694 -26.39918 -25.63154 -24.22456 -23.23816 -20.96743 -20.00698 -19.77131 -18.17993 -17.63473 -16.92663 -15.93999 -15.24512 -14.82547 -14.42052 -14.29144 -14.17466 -13.82868 -13.59064 -13.18364 -12.95747 -12.69520 -12.64640 -12.60835 -12.36545 -12.10361 -11.96126 -11.81656 -11.69797 -11.53993 -11.19525 -11.02499 -10.87115 -10.76275 -10.63211 -10.44812 -10.27356 -10.25696 -10.05016 -9.92445 -9.52519 -9.26979 -8.86655 -8.67328 -7.19969 -5.70670 -3.05026 3.02374 3.42874 3.46933 3.51883 3.52440 4.46145 4.58570 4.66159 4.74523 4.78861 5.01108 5.15527 5.26823 5.28751 5.40308 5.42729 5.56788 5.59859 5.61272 5.63416 5.80087 5.81720 5.83777 5.85283 5.88349 5.90931 5.95813 6.00663 6.03829 6.17305 6.21305 6.26190 6.28199 6.34725 6.40260 6.45559 6.58219 6.59548 6.79512 6.91320 7.01148 7.87532 8.04577 8.48233 8.64388 9.27034 10.00271 10.19546 11.47935 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.005807 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.885424 B = 4820.835487 C = 5704.080196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.055 0.945 4 C -0.134 4.134 5 C 0.142 3.858 6 H 0.098 0.902 7 C -0.161 4.161 8 N -0.717 5.717 9 C 0.524 3.476 10 O -0.537 6.537 11 C -0.137 4.137 12 C -0.113 4.113 13 C -0.092 4.092 14 C -0.126 4.126 15 C -0.136 4.136 16 C -0.106 4.106 17 N -0.745 5.745 18 C -0.236 4.236 19 H 0.088 0.912 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.880 3.120 23 H -0.283 1.283 24 H -0.278 1.278 25 H -0.293 1.293 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 7.365 16.865 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.116 0.884 7 C -0.220 4.220 8 N -0.367 5.367 9 C 0.310 3.690 10 O -0.413 6.413 11 C -0.158 4.158 12 C -0.151 4.151 13 C -0.092 4.092 14 C -0.184 4.184 15 C -0.194 4.194 16 C -0.144 4.144 17 N -0.388 5.388 18 C -0.366 4.366 19 H 0.105 0.895 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.219 1.219 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.192 0.808 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.231 6.962 16.302 18.224 hybrid contribution -0.142 -1.098 0.128 1.114 sum 4.088 5.864 16.430 17.918 Atomic orbital electron populations 1.22425 0.99084 1.00779 1.00267 1.20189 0.91660 0.95867 0.85517 0.92699 1.22212 0.93971 1.02017 0.99101 1.20969 0.94863 0.80977 0.99442 0.88437 1.22189 1.01600 0.99970 0.98197 1.45962 1.16774 1.11130 1.62873 1.20389 0.81632 0.89663 0.77274 1.90690 1.51357 1.56429 1.42859 1.22705 0.99900 0.92476 1.00754 1.23059 0.96485 0.96556 0.98960 1.21822 0.96727 0.94475 0.96149 1.21592 1.01642 0.97194 0.97924 1.21725 1.00581 1.01601 0.95447 1.22933 0.94326 0.96209 1.00948 1.42776 1.79666 1.09217 1.07177 1.18992 1.36591 0.95327 0.85692 0.89468 1.24624 1.01460 0.97305 0.95611 1.69696 1.53044 1.35497 1.00092 0.86611 0.78666 0.87033 0.76618 1.20973 1.20427 1.21905 0.94410 0.92452 0.93694 0.91627 0.90898 0.92480 0.92998 0.91987 0.77222 0.87623 0.88713 0.90939 0.92497 0.92386 0.92582 0.91895 0.92683 0.92733 0.91503 0.88540 0.80801 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.49 37.16 0.35 -2.43 16 2 C 0.18 3.22 2.84 -67.93 -0.19 3.03 16 3 H 0.06 1.04 7.56 -51.92 -0.39 0.65 16 4 C -0.13 -1.94 4.29 -26.73 -0.11 -2.05 16 5 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.10 1.98 7.06 -51.93 -0.37 1.61 16 7 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 8 N -0.72 -10.23 4.45 -53.80 -0.24 -10.47 16 9 C 0.52 8.55 7.32 -10.99 -0.08 8.47 16 10 O -0.54 -11.23 15.57 5.55 0.09 -11.15 16 11 C -0.14 -1.72 3.79 -90.96 -0.34 -2.06 16 12 C -0.11 -1.44 6.76 -25.82 -0.17 -1.61 16 13 C -0.09 -1.03 1.39 -153.60 -0.21 -1.25 16 14 C -0.13 -1.12 9.07 37.15 0.34 -0.78 16 15 C -0.14 -1.59 9.20 37.16 0.34 -1.24 16 16 C -0.11 -1.36 6.55 -25.92 -0.17 -1.53 16 17 N -0.75 -17.37 4.30 -53.43 -0.23 -17.60 16 18 C -0.24 -6.65 10.41 -15.06 -0.16 -6.80 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 21 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 22 Si 0.88 22.91 27.74 -169.99 -4.72 18.19 16 23 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.28 -6.76 6.51 56.52 0.37 -6.40 16 25 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.46 8.60 -40.82 -0.35 4.11 16 35 H 0.11 1.03 7.66 -51.93 -0.40 0.64 16 36 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 37 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.45 7.34 -51.93 -0.38 0.07 16 41 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.10 1.50 7.41 -51.93 -0.38 1.11 16 46 H 0.36 8.43 5.65 -40.82 -0.23 8.20 16 47 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -33.58 372.79 -7.87 -41.45 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.84 Total: 10.95 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.33 Total: -7.93 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.31 Total: -57.13 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.72 Total: 18.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.58 -7.87 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134256274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.784 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds