Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47563 * 2 1 4 4 C 1.53003 * 109.47081 * 239.99727 * 2 1 3 5 5 C 1.53002 * 109.47275 * 174.81806 * 4 2 1 6 6 H 1.09004 * 109.47072 * 54.04900 * 5 4 2 7 7 C 1.53008 * 109.46851 * 294.05968 * 5 4 2 8 8 N 1.46493 * 109.47504 * 174.05816 * 5 4 2 9 9 C 1.34780 * 120.00108 * 201.39302 * 8 5 4 10 10 O 1.21280 * 119.99640 * 4.93856 * 9 8 5 11 11 C 1.50691 * 120.00139 * 184.93677 * 9 8 5 12 12 C 1.52998 * 110.01867 * 54.77296 * 11 9 8 13 13 C 1.54268 * 110.03440 * 293.38572 * 11 9 8 14 14 C 1.54971 * 104.16070 * 217.13469 * 13 11 9 15 15 C 1.54896 * 102.77590 * 37.88552 * 14 13 11 16 16 C 1.53880 * 110.03507 * 176.16601 * 11 9 8 17 17 N 1.46508 * 109.46985 * 120.00156 * 2 1 3 18 18 C 1.36933 * 119.99669 * 278.65799 * 17 2 1 19 19 H 1.08003 * 119.99827 * 5.04815 * 18 17 2 20 20 C 1.38815 * 120.00129 * 185.04827 * 18 17 2 21 21 N 1.31614 * 119.99839 * 5.08549 * 20 18 17 22 22 Si 1.86799 * 119.99917 * 185.08673 * 20 18 17 23 23 H 1.48496 * 109.47408 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46921 * 120.00081 * 22 20 18 25 25 H 1.48505 * 109.46736 * 239.99526 * 22 20 18 26 26 H 1.08999 * 109.47033 * 60.00154 * 1 2 3 27 27 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47400 * 299.99920 * 1 2 3 29 29 H 1.08996 * 109.47483 * 54.81864 * 4 2 1 30 30 H 1.09001 * 109.47286 * 294.81550 * 4 2 1 31 31 H 1.09003 * 109.46898 * 179.97438 * 7 5 4 32 32 H 1.08997 * 109.47023 * 299.99250 * 7 5 4 33 33 H 1.09000 * 109.46949 * 59.99908 * 7 5 4 34 34 H 0.96998 * 119.99815 * 21.39309 * 8 5 4 35 35 H 1.09001 * 109.46711 * 60.70021 * 12 11 9 36 36 H 1.08996 * 109.47950 * 180.70022 * 12 11 9 37 37 H 1.09005 * 109.47487 * 300.70599 * 12 11 9 38 38 H 1.09000 * 110.48722 * 335.77903 * 13 11 9 39 39 H 1.08994 * 110.48798 * 98.42568 * 13 11 9 40 40 H 1.08998 * 110.71976 * 279.57187 * 14 13 11 41 41 H 1.09006 * 110.76274 * 156.21731 * 14 13 11 42 42 H 1.08999 * 110.48507 * 203.40153 * 15 14 13 43 43 H 1.09003 * 110.59834 * 80.81586 * 15 14 13 44 44 H 1.09003 * 110.03111 * 238.57070 * 16 11 9 45 45 H 1.08999 * 110.03004 * 359.95064 * 16 11 9 46 46 H 0.96999 * 120.00041 * 98.65977 * 17 2 1 47 47 H 0.96996 * 120.00365 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5644 -0.6095 -1.3161 6 1 3.9966 -0.9706 -0.3828 7 6 3.9596 0.8533 -1.5285 8 7 4.0650 -1.4174 -2.4310 9 6 5.3485 -1.8285 -2.4423 10 8 6.0647 -1.6068 -1.4890 11 6 5.8936 -2.5637 -3.6395 12 6 5.6675 -1.7390 -4.9082 13 6 5.2064 -3.9384 -3.7734 14 6 6.3360 -4.8810 -4.2603 15 6 7.5700 -4.3711 -3.4750 16 6 7.3958 -2.8386 -3.4502 17 7 2.0183 -0.6907 1.1962 18 6 2.0782 -0.0279 2.3929 19 1 1.6900 0.9767 2.4738 20 6 2.6378 -0.6471 3.5022 21 7 3.2006 -1.8307 3.3810 22 14 2.5919 0.1994 5.1667 23 1 1.9077 1.5108 5.0365 24 1 1.8521 -0.6505 6.1340 25 1 3.9791 0.4102 5.6531 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6029 -0.2640 -2.1368 30 1 1.7545 -1.7723 -1.2040 31 1 5.0457 0.9330 -1.5757 32 1 3.5276 1.2145 -2.4617 33 1 3.5873 1.4544 -0.6990 34 1 3.4726 -1.6564 -3.1609 35 1 6.1874 -0.7852 -4.8189 36 1 6.0535 -2.2840 -5.7695 37 1 4.6003 -1.5601 -5.0399 38 1 4.8235 -4.2691 -2.8080 39 1 4.4029 -3.8932 -4.5085 40 1 6.4907 -4.7751 -5.3340 41 1 6.1139 -5.9163 -4.0011 42 1 8.4902 -4.6423 -3.9925 43 1 7.5715 -4.7713 -2.4611 44 1 7.9636 -2.3851 -4.2627 45 1 7.7307 -2.4394 -2.4928 46 1 2.2992 -1.6174 1.1405 47 1 3.5920 -2.2633 4.1559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135116150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = -57.904438 kcal Electronic energy + Delta-G solvation = -23373.849679 eV Core-core repulsion = 20169.504639 eV Total energy + Delta-G solvation = -3204.345040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35465 -37.79703 -36.56914 -34.50917 -32.40386 -31.55664 -29.90419 -28.73768 -28.46946 -26.29060 -25.72276 -23.72750 -22.67146 -20.86461 -20.59908 -19.69034 -18.80220 -17.23182 -16.91509 -15.85101 -15.32917 -15.05296 -14.92835 -14.23555 -13.92502 -13.89380 -13.51434 -13.48815 -13.10134 -12.79229 -12.69052 -12.40966 -12.06010 -11.88560 -11.73056 -11.59933 -11.27714 -11.25759 -11.11886 -10.97314 -10.93302 -10.81042 -10.77443 -10.58242 -10.54746 -10.31671 -10.20538 -9.89414 -9.59980 -9.28494 -8.81784 -8.70384 -6.88228 -5.69515 -2.98393 2.93083 3.43204 3.47793 3.53121 3.55685 4.34648 4.47433 4.63134 4.65171 5.05700 5.09490 5.16455 5.25541 5.31030 5.38851 5.41075 5.52405 5.61274 5.63345 5.68035 5.70930 5.72854 5.81689 5.84091 5.87573 5.89372 6.00601 6.08202 6.10754 6.12883 6.22190 6.23895 6.33650 6.36688 6.45783 6.58329 6.59090 6.79416 6.92865 6.95795 7.11650 7.77495 7.81852 8.48829 8.55451 9.59475 10.17253 10.52036 11.52747 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.004140 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.489388 B = 6761.897990 C = 7469.865866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.050 0.950 4 C -0.127 4.127 5 C 0.140 3.860 6 H 0.106 0.894 7 C -0.156 4.156 8 N -0.724 5.724 9 C 0.520 3.480 10 O -0.530 6.530 11 C -0.085 4.085 12 C -0.134 4.134 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.116 4.116 17 N -0.722 5.722 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.392 0.608 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.382 0.618 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -2.512 -20.450 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.166 4.166 5 C 0.037 3.963 6 H 0.124 0.876 7 C -0.215 4.215 8 N -0.375 5.375 9 C 0.305 3.695 10 O -0.406 6.406 11 C -0.088 4.088 12 C -0.192 4.192 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.154 4.154 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.734 3.266 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.225 0.775 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.584 -2.187 -19.604 20.049 hybrid contribution -0.318 0.014 0.621 0.698 sum 3.266 -2.173 -18.983 19.384 Atomic orbital electron populations 1.22426 0.99343 1.00750 0.99871 1.20233 0.91762 0.95645 0.86074 0.93256 1.22081 0.93791 1.01548 0.99154 1.21062 0.94178 0.90433 0.90630 0.87650 1.22139 1.01363 0.96509 1.01441 1.46149 1.11349 1.54656 1.25306 1.20419 0.82125 0.78663 0.88309 1.90715 1.57889 1.56036 1.35939 1.21425 0.97408 0.96016 0.93991 1.21867 1.01886 0.99670 0.95753 1.22460 0.97818 0.92826 1.01974 1.22490 0.94931 0.98816 0.99688 1.22354 0.97767 0.95426 1.00613 1.22234 0.92938 0.96305 1.03886 1.42444 1.77273 1.12700 1.04037 1.19226 1.32236 0.98267 0.87212 0.91275 1.24729 1.00716 0.97179 0.98148 1.69689 1.42948 1.15772 1.29269 0.86185 0.77155 0.78471 0.84795 1.20608 1.21967 1.21944 0.94625 0.93598 0.92791 0.92125 0.91730 0.92922 0.93524 0.90797 0.77461 0.92177 0.91632 0.92279 0.90904 0.90955 0.91482 0.91433 0.91732 0.91367 0.91602 0.89148 0.78398 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.44 37.16 0.35 -2.53 16 2 C 0.17 3.34 2.77 -67.93 -0.19 3.16 16 3 H 0.05 0.98 6.34 -51.93 -0.33 0.65 16 4 C -0.13 -2.00 4.36 -26.73 -0.12 -2.12 16 5 C 0.14 2.38 2.59 -67.93 -0.18 2.21 16 6 H 0.11 2.37 7.05 -51.93 -0.37 2.00 16 7 C -0.16 -2.51 9.21 37.16 0.34 -2.17 16 8 N -0.72 -10.13 4.94 -53.81 -0.27 -10.40 16 9 C 0.52 8.08 6.28 -10.99 -0.07 8.01 16 10 O -0.53 -10.92 14.91 5.56 0.08 -10.84 16 11 C -0.09 -0.97 0.79 -154.54 -0.12 -1.09 16 12 C -0.13 -1.17 8.00 37.16 0.30 -0.88 16 13 C -0.11 -1.12 5.89 -25.03 -0.15 -1.27 16 14 C -0.12 -1.07 6.91 -24.69 -0.17 -1.24 16 15 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 16 C -0.12 -1.35 6.05 -25.61 -0.16 -1.51 16 17 N -0.72 -17.94 4.52 -53.42 -0.24 -18.18 16 18 C -0.24 -6.63 9.89 -15.06 -0.15 -6.78 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.71 13.08 55.49 0.73 -27.98 16 22 Si 0.90 22.85 29.56 -169.99 -5.02 17.82 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.27 6.49 -51.93 -0.34 0.93 16 34 H 0.39 4.22 7.85 -40.82 -0.32 3.90 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.45 7.42 -51.93 -0.39 0.06 16 38 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 39 H 0.07 0.57 7.84 -51.93 -0.41 0.17 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 45 H 0.09 1.33 6.40 -51.93 -0.33 1.00 16 46 H 0.38 10.25 7.76 -40.82 -0.32 9.93 16 47 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -32.57 367.52 -8.40 -40.96 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.64 Total: 11.13 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.57 Total: -8.06 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.22 Total: -56.56 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -8.40 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135116150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.942 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds