Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.53005 * 109.47474 * 120.00591 * 2 1 3 5 5 C 1.52999 * 109.47395 * 184.99843 * 4 2 1 6 6 H 1.09007 * 109.46762 * 304.99710 * 5 4 2 7 7 C 1.52999 * 109.47176 * 184.99735 * 5 4 2 8 8 N 1.46499 * 109.47343 * 64.99480 * 5 4 2 9 9 C 1.34773 * 120.00323 * 205.00022 * 8 5 4 10 10 O 1.21284 * 119.99983 * 0.02562 * 9 8 5 11 11 C 1.50699 * 120.00104 * 179.97438 * 9 8 5 12 12 C 1.53009 * 110.01236 * 59.30637 * 11 9 8 13 13 C 1.54261 * 110.03744 * 297.91345 * 11 9 8 14 14 C 1.54968 * 104.15839 * 217.13801 * 13 11 9 15 15 C 1.54884 * 102.78184 * 37.88331 * 14 13 11 16 16 C 1.53876 * 110.03298 * 180.69135 * 11 9 8 17 17 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 18 18 C 1.36943 * 119.99781 * 85.00152 * 17 2 1 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 2 20 20 C 1.38811 * 119.99622 * 180.27904 * 18 17 2 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 27 27 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 28 28 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46874 * 304.99546 * 4 2 1 30 30 H 1.08991 * 109.47156 * 64.99306 * 4 2 1 31 31 H 1.09001 * 109.46470 * 59.99882 * 7 5 4 32 32 H 1.08995 * 109.47132 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.46829 * 300.00125 * 7 5 4 34 34 H 0.97002 * 119.99674 * 25.00509 * 8 5 4 35 35 H 1.08989 * 109.47634 * 60.69706 * 12 11 9 36 36 H 1.08999 * 109.46645 * 180.70035 * 12 11 9 37 37 H 1.09004 * 109.46636 * 300.69090 * 12 11 9 38 38 H 1.09003 * 110.48334 * 335.78067 * 13 11 9 39 39 H 1.08996 * 110.48939 * 98.42301 * 13 11 9 40 40 H 1.09007 * 110.71666 * 279.56745 * 14 13 11 41 41 H 1.09002 * 110.91845 * 156.29744 * 14 13 11 42 42 H 1.08996 * 110.49137 * 203.40595 * 15 14 13 43 43 H 1.09001 * 110.48423 * 80.76176 * 15 14 13 44 44 H 1.09004 * 110.03572 * 238.57712 * 16 11 9 45 45 H 1.09006 * 110.03296 * 359.95298 * 16 11 9 46 46 H 0.97000 * 120.00410 * 265.00478 * 17 2 1 47 47 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5649 -0.6135 1.3136 6 1 3.9954 -0.9924 0.3866 7 6 4.0852 -1.4385 2.4923 8 7 3.9481 0.7892 1.4924 9 6 5.1613 1.2133 1.0866 10 8 5.9357 0.4339 0.5730 11 6 5.5552 2.6563 1.2700 12 6 5.5062 3.0280 2.7534 13 6 4.6076 3.5693 0.4649 14 6 5.5286 4.6964 -0.0671 15 6 6.8349 3.9383 -0.4101 16 6 6.9708 2.8910 0.7144 17 7 2.0183 -0.6906 -1.1962 18 6 2.1491 -0.0074 -2.3758 19 1 1.8918 1.0405 -2.4243 20 6 2.6062 -0.6631 -3.5106 21 7 2.9192 -1.9402 -3.4517 22 14 2.7773 0.2670 -5.1216 23 1 4.1393 0.8516 -5.2133 24 1 2.5613 -0.6656 -6.2569 25 1 1.7672 1.3543 -5.1751 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2619 2.1369 30 1 1.7516 -1.7715 1.2055 31 1 3.8001 -2.4821 2.3592 32 1 5.1715 -1.3620 2.5379 33 1 3.6546 -1.0596 3.4192 34 1 3.3286 1.4126 1.9028 35 1 6.2059 2.4029 3.3080 36 1 5.7804 4.0760 2.8746 37 1 4.4972 2.8702 3.1343 38 1 4.1606 3.0194 -0.3633 39 1 3.8337 3.9816 1.1122 40 1 5.7076 5.4448 0.7050 41 1 5.1040 5.1575 -0.9589 42 1 7.6853 4.6201 -0.4013 43 1 6.7480 3.4479 -1.3797 44 1 7.6227 3.2705 1.5013 45 1 7.3733 1.9609 0.3128 46 1 2.2489 -1.6318 -1.1528 47 1 3.2390 -2.3982 -4.2446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135116152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -58.705022 kcal Electronic energy + Delta-G solvation = -24046.184893 eV Core-core repulsion = 20841.805137 eV Total energy + Delta-G solvation = -3204.379756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22481 -37.70147 -36.41411 -34.38685 -32.25744 -31.55123 -30.04538 -28.58516 -28.51058 -26.27582 -25.59019 -23.59598 -22.48440 -20.73349 -20.49329 -19.64542 -18.92955 -17.21317 -16.80129 -15.86289 -15.24616 -14.84076 -14.76055 -14.04526 -13.88047 -13.78668 -13.55951 -13.34111 -12.96638 -12.71908 -12.62324 -12.34297 -12.09424 -11.93384 -11.69937 -11.59463 -11.45018 -11.08339 -11.01559 -10.93667 -10.81807 -10.78322 -10.62074 -10.57072 -10.39747 -10.33990 -10.18656 -9.84954 -9.57711 -9.19286 -8.83604 -8.58518 -6.87401 -5.68842 -2.96469 3.09479 3.47970 3.52345 3.54192 3.56576 4.49778 4.63742 4.65779 4.78665 5.13766 5.22984 5.25443 5.31484 5.42772 5.47457 5.53453 5.56036 5.65788 5.69609 5.73846 5.78610 5.85245 5.87452 5.94675 5.98618 5.99646 6.02121 6.05797 6.16359 6.18397 6.30739 6.33996 6.40660 6.41489 6.48028 6.50444 6.61646 6.79191 6.89019 7.02238 7.11478 7.75785 7.93969 8.49583 8.69873 9.60828 10.18744 10.52850 11.54030 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.006664 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.389149 B = 4200.812378 C = 5393.445524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.714 5.714 9 C 0.525 3.475 10 O -0.533 6.533 11 C -0.084 4.084 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.114 4.114 17 N -0.720 5.720 18 C -0.233 4.233 19 H 0.066 0.934 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.392 0.608 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 10.695 14.721 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.365 5.365 9 C 0.310 3.690 10 O -0.409 6.409 11 C -0.087 4.087 12 C -0.190 4.190 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.152 4.152 17 N -0.361 5.361 18 C -0.364 4.364 19 H 0.084 0.916 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.226 0.774 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.249 10.217 14.201 17.793 hybrid contribution -0.267 0.413 -0.764 0.909 sum 2.982 10.630 13.437 17.391 Atomic orbital electron populations 1.22460 0.99626 1.00763 0.99696 1.20214 0.91464 0.95549 0.86570 0.93642 1.22160 0.93904 1.02106 0.98744 1.21011 0.94937 0.80482 0.99725 0.87766 1.22173 1.01434 1.00139 0.98073 1.45930 1.16513 1.11337 1.62700 1.20331 0.81756 0.89646 0.77249 1.90677 1.51166 1.56318 1.42787 1.21400 0.97695 0.92545 0.97103 1.21855 1.01999 1.01819 0.93373 1.22473 0.96949 0.96003 0.99749 1.22474 0.95714 0.97127 1.00578 1.22357 0.97296 0.97313 0.99253 1.22215 0.94184 1.00958 0.97846 1.42388 1.77945 1.10527 1.05259 1.19142 1.36419 0.93573 0.87271 0.91565 1.24682 1.02327 0.95899 0.97880 1.69641 1.51088 1.08572 1.28687 0.86280 0.77752 0.78624 0.84103 1.21784 1.21858 1.20922 0.94771 0.92954 0.93566 0.92191 0.90756 0.91874 0.92631 0.93258 0.77448 0.92333 0.91678 0.92360 0.90305 0.91114 0.91700 0.91426 0.91860 0.91266 0.91776 0.89216 0.78373 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.02 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 6 H 0.10 2.28 7.06 -51.93 -0.37 1.91 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 8 N -0.71 -10.62 4.28 -53.81 -0.23 -10.85 16 9 C 0.52 8.79 6.32 -10.99 -0.07 8.72 16 10 O -0.53 -11.44 14.87 5.55 0.08 -11.36 16 11 C -0.08 -1.09 0.78 -154.54 -0.12 -1.21 16 12 C -0.13 -1.29 8.04 37.16 0.30 -1.00 16 13 C -0.11 -1.40 5.84 -25.03 -0.15 -1.55 16 14 C -0.12 -1.34 6.91 -24.70 -0.17 -1.51 16 15 C -0.12 -1.53 6.83 -25.08 -0.17 -1.70 16 16 C -0.11 -1.51 6.05 -25.61 -0.16 -1.67 16 17 N -0.72 -17.74 4.49 -53.42 -0.24 -17.98 16 18 C -0.23 -6.49 9.93 -15.06 -0.15 -6.63 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 22 Si 0.90 23.06 29.55 -169.99 -5.02 18.03 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.39 4.73 7.99 -40.82 -0.33 4.41 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.49 7.55 -51.93 -0.39 0.10 16 38 H 0.08 1.21 7.85 -51.93 -0.41 0.81 16 39 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 45 H 0.09 1.46 6.39 -51.93 -0.33 1.13 16 46 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 47 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -32.53 370.23 -8.47 -41.00 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -8.81 Total: 11.90 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.55 Total: -8.31 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.25 Total: -56.84 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.53 -8.47 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135116152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.708 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds