Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.53005 * 110.01371 * 59.30115 * 11 9 8 13 13 C 1.54264 * 110.03345 * 297.91099 * 11 9 8 14 14 C 1.54965 * 104.15823 * 217.13674 * 13 11 9 15 15 C 1.54889 * 102.77817 * 37.88349 * 14 13 11 16 16 C 1.53880 * 110.03227 * 180.68799 * 11 9 8 17 17 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 27 27 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 28 28 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 30 30 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 31 31 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 32 32 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 33 33 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 34 34 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 35 35 H 1.08998 * 109.47404 * 60.70300 * 12 11 9 36 36 H 1.09003 * 109.46781 * 180.69955 * 12 11 9 37 37 H 1.08996 * 109.46876 * 300.69999 * 12 11 9 38 38 H 1.09006 * 110.48233 * 335.78198 * 13 11 9 39 39 H 1.08997 * 110.48865 * 98.42743 * 13 11 9 40 40 H 1.09000 * 110.71661 * 279.57276 * 14 13 11 41 41 H 1.08995 * 110.76639 * 156.22066 * 14 13 11 42 42 H 1.08999 * 110.48900 * 203.40583 * 15 14 13 43 43 H 1.09004 * 110.59878 * 80.82333 * 15 14 13 44 44 H 1.08999 * 110.03402 * 238.56915 * 16 11 9 45 45 H 1.09000 * 110.02997 * 359.95691 * 16 11 9 46 46 H 0.97004 * 119.99747 * 95.00774 * 17 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 4.5736 3.5658 -0.5274 13 6 5.5733 3.0129 -2.7708 14 6 6.7782 3.9764 -2.9170 15 6 7.8216 3.3698 -1.9462 16 6 6.9838 2.8839 -0.7456 17 7 2.0183 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0403 2.4244 20 6 2.6122 -0.6617 3.5091 21 7 2.9205 -1.9400 3.4511 22 14 2.7899 0.2699 5.1184 23 1 3.2931 -0.6500 6.1700 24 1 3.7495 1.3891 4.9391 25 1 1.4684 0.8113 5.5254 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 3.6547 -1.0591 -3.4193 32 1 5.1716 -1.3615 -2.5380 33 1 3.8002 -2.4818 -2.3594 34 1 3.3284 1.4130 -1.9027 35 1 4.5953 3.3316 0.5369 36 1 4.8593 4.6072 -0.6761 37 1 3.5670 3.4064 -0.9141 38 1 5.7256 2.1175 -3.3735 39 1 4.6475 3.5128 -3.0556 40 1 6.5047 4.9855 -2.6088 41 1 7.1543 3.9723 -3.9400 42 1 8.5359 4.1301 -1.6301 43 1 8.3394 2.5324 -2.4140 44 1 6.9781 3.6424 0.0372 45 1 7.3919 1.9505 -0.3578 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135116153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -58.274220 kcal Electronic energy + Delta-G solvation = -23956.486062 eV Core-core repulsion = 20752.124987 eV Total energy + Delta-G solvation = -3204.361075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29285 -37.81006 -36.52678 -34.56319 -32.42585 -31.64101 -30.04279 -28.68356 -28.27442 -26.36886 -25.59365 -23.41660 -22.54883 -20.87521 -20.60750 -19.82127 -18.99017 -17.35454 -16.92467 -15.97939 -15.30222 -14.98740 -14.51344 -14.48188 -14.15142 -13.71831 -13.54422 -13.25501 -13.15030 -13.02931 -12.62462 -12.35855 -12.13040 -12.05329 -11.68986 -11.67152 -11.55192 -11.23429 -11.05844 -10.99662 -10.87400 -10.72011 -10.68439 -10.47565 -10.44535 -10.41426 -10.06788 -9.91176 -9.25217 -9.08878 -8.84082 -8.65348 -6.94655 -6.00880 -3.00001 3.03658 3.50734 3.55287 3.59839 3.76713 4.40841 4.52753 4.69322 4.74172 5.05068 5.17619 5.18457 5.29424 5.37206 5.41172 5.41882 5.46131 5.55901 5.63866 5.69391 5.72287 5.74685 5.82541 5.85003 5.90636 5.91267 5.95765 6.03979 6.05380 6.09222 6.23710 6.24947 6.30513 6.32926 6.39457 6.43651 6.50016 6.66833 6.81575 6.94260 7.03157 7.87491 7.87655 8.63970 8.84219 9.31623 10.17815 10.32684 11.47550 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.005661 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.113096 B = 4944.855292 C = 5863.927214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.100 0.900 7 C -0.160 4.160 8 N -0.714 5.714 9 C 0.525 3.475 10 O -0.534 6.534 11 C -0.083 4.083 12 C -0.136 4.136 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.123 4.123 16 C -0.117 4.117 17 N -0.731 5.731 18 C -0.324 4.324 19 H 0.060 0.940 20 C -0.044 4.044 21 N -0.944 5.944 22 Si 1.076 2.924 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.297 1.297 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.365 0.635 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 10.920 -16.123 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.039 3.961 6 H 0.118 0.882 7 C -0.219 4.219 8 N -0.365 5.365 9 C 0.311 3.689 10 O -0.410 6.410 11 C -0.086 4.086 12 C -0.193 4.193 13 C -0.149 4.149 14 C -0.159 4.159 15 C -0.160 4.160 16 C -0.154 4.154 17 N -0.374 5.374 18 C -0.455 4.455 19 H 0.078 0.922 20 C -0.242 4.242 21 N -0.589 5.589 22 Si 0.907 3.093 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.224 1.224 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.198 0.802 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.160 10.426 -14.093 18.018 hybrid contribution -0.911 0.177 -1.797 2.023 sum 3.248 10.604 -15.891 19.378 Atomic orbital electron populations 1.22443 0.99540 1.00690 0.99827 1.20146 0.91456 0.95552 0.86078 0.93495 1.22184 0.93979 1.02004 0.98907 1.20977 0.94846 0.80666 0.99562 0.88167 1.22179 1.01514 1.00070 0.98099 1.45916 1.16531 1.11255 1.62792 1.20352 0.81653 0.89777 0.77148 1.90675 1.51096 1.56428 1.42777 1.21394 0.97751 0.92556 0.96904 1.21871 0.97746 0.98630 1.01095 1.22446 0.99100 0.99587 0.93773 1.22489 0.95434 0.98696 0.99319 1.22349 0.97529 1.00053 0.96114 1.22239 0.92345 1.03178 0.97668 1.42394 1.79118 1.09649 1.06239 1.19936 1.41599 0.94846 0.89142 0.92167 1.25655 0.99535 0.97511 1.01472 1.70871 1.51515 1.08210 1.28336 0.83302 0.75706 0.74390 0.75891 1.21064 1.22406 1.22437 0.92870 0.94637 0.93703 0.90898 0.92003 0.93133 0.92547 0.91909 0.77391 0.91522 0.91759 0.92308 0.91365 0.90983 0.91355 0.91636 0.91716 0.91715 0.91360 0.89155 0.80152 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.49 37.16 0.35 -2.59 16 2 C 0.18 3.43 2.84 -67.93 -0.19 3.23 16 3 H 0.05 0.94 7.56 -51.93 -0.39 0.54 16 4 C -0.13 -2.05 4.29 -26.73 -0.11 -2.16 16 5 C 0.14 2.38 2.52 -67.93 -0.17 2.21 16 6 H 0.10 2.18 7.05 -51.93 -0.37 1.82 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.90 16 8 N -0.71 -10.71 4.28 -53.80 -0.23 -10.94 16 9 C 0.53 8.85 6.32 -10.98 -0.07 8.78 16 10 O -0.53 -11.48 14.87 5.56 0.08 -11.40 16 11 C -0.08 -1.07 0.78 -154.54 -0.12 -1.19 16 12 C -0.14 -1.65 8.04 37.16 0.30 -1.35 16 13 C -0.11 -1.11 5.84 -25.03 -0.15 -1.26 16 14 C -0.12 -1.08 6.91 -24.70 -0.17 -1.26 16 15 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 16 C -0.12 -1.54 6.06 -25.61 -0.16 -1.69 16 17 N -0.73 -18.11 4.49 -53.43 -0.24 -18.35 16 18 C -0.32 -9.18 9.93 -15.06 -0.15 -9.33 16 19 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 20 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 21 N -0.94 -29.91 13.70 55.49 0.76 -29.15 16 22 Si 1.08 26.86 29.92 -169.99 -5.09 21.78 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.39 4.80 7.99 -40.82 -0.33 4.47 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.65 7.55 -51.93 -0.39 0.26 16 38 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 39 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.85 7.67 -51.93 -0.40 0.45 16 45 H 0.09 1.46 6.39 -51.93 -0.33 1.13 16 46 H 0.37 9.49 6.63 -40.82 -0.27 9.22 16 47 H 0.25 7.95 6.77 -40.82 -0.28 7.67 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -33.70 368.53 -8.41 -42.11 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.69 Total: 11.76 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.55 Total: -11.37 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.29 Total: -58.44 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -5.09 Total: 21.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.70 -8.41 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135116153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.167 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds