Wall clock time and date at job start Tue Mar 31 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 5 5 C 1.50700 * 109.47208 * 64.99916 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.52999 * 109.46992 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 8 7 11 11 C 1.36935 * 120.00693 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99338 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00463 * 180.02562 * 11 10 9 14 14 N 1.31617 * 119.99677 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99748 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 90.00179 * 15 13 11 17 17 H 1.48502 * 109.46736 * 209.99958 * 15 13 11 18 18 H 1.48493 * 109.47010 * 329.99655 * 15 13 11 19 19 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 20 20 C 1.53004 * 109.47023 * 300.00027 * 19 2 1 21 21 C 1.52993 * 109.47345 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47180 * 59.99676 * 21 20 19 23 23 C 1.52996 * 109.47351 * 300.00155 * 22 21 20 24 24 C 1.52990 * 109.47183 * 180.02562 * 19 2 1 25 25 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47118 * 300.00234 * 1 2 3 27 27 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 28 28 H 1.09009 * 109.46730 * 304.99822 * 4 2 1 29 29 H 1.08998 * 109.46846 * 185.00367 * 4 2 1 30 30 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 31 31 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 32 32 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 33 33 H 1.09009 * 109.47378 * 299.99899 * 9 8 7 34 34 H 1.08993 * 109.47209 * 59.99808 * 9 8 7 35 35 H 0.97000 * 119.99456 * 0.02562 * 10 9 8 36 36 H 0.97004 * 119.99494 * 179.97438 * 14 13 11 37 37 H 1.09005 * 109.47209 * 59.99320 * 19 2 1 38 38 H 1.09004 * 109.46938 * 300.00365 * 20 19 2 39 39 H 1.09005 * 109.47154 * 59.99567 * 20 19 2 40 40 H 1.09005 * 109.47025 * 299.99377 * 21 20 19 41 41 H 1.08998 * 109.47502 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47022 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47070 * 60.00455 * 22 21 20 44 44 H 1.08997 * 109.47278 * 300.00172 * 23 22 21 45 45 H 1.09000 * 109.46998 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.47517 * 299.99447 * 24 19 2 47 47 H 1.08997 * 109.47390 * 60.00031 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9801 -0.3944 -3.7005 8 6 1.5874 0.3591 -4.8938 9 6 2.0931 -0.3646 -6.1433 10 7 1.6998 0.3885 -7.3368 11 6 2.0438 -0.0702 -8.5803 12 1 2.6055 -0.9872 -8.6811 13 6 1.6717 0.6437 -9.7110 14 7 2.0028 0.2029 -10.9061 15 14 0.7021 2.2308 -9.5363 16 1 1.6417 3.3754 -9.4268 17 1 -0.1652 2.4146 -10.7277 18 1 -0.1411 2.1639 -8.3159 19 6 2.0401 -0.7213 1.2492 20 6 1.5300 -0.0002 2.4985 21 6 2.0405 -0.7210 3.7476 22 6 3.5705 -0.7205 3.7473 23 6 4.0805 -1.4417 2.4981 24 6 3.5700 -0.7208 1.2495 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7198 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 2.4841 -1.2183 -3.7911 31 1 0.5009 0.4368 -4.9333 32 1 2.0217 1.3580 -4.8522 33 1 3.1797 -0.4419 -6.1037 34 1 1.6591 -1.3635 -6.1852 35 1 1.1957 1.2123 -7.2461 36 1 1.7424 0.7016 -11.6963 37 1 1.6766 -1.7490 1.2491 38 1 1.8933 1.0276 2.4985 39 1 0.4400 -0.0001 2.4985 40 1 1.6775 -1.7489 3.7479 41 1 1.6768 -0.2076 4.6377 42 1 3.9342 -1.2345 4.6371 43 1 3.9335 0.3072 3.7472 44 1 3.7175 -2.4695 2.4982 45 1 5.1705 -1.4409 2.4977 46 1 3.9337 -1.2343 0.3595 47 1 3.9330 0.3070 1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135227963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:37 Heat of formation + Delta-G solvation = -65.571251 kcal Electronic energy + Delta-G solvation = -22102.748482 eV Core-core repulsion = 18898.070984 eV Total energy + Delta-G solvation = -3204.677498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14827 -38.92004 -35.99974 -34.87010 -33.91015 -31.51963 -31.21135 -29.97157 -28.70509 -27.19124 -23.94686 -23.08418 -22.64618 -21.49027 -20.72483 -20.06944 -19.78642 -17.81083 -17.05607 -15.93042 -15.78001 -15.50560 -14.94261 -14.53211 -14.37139 -14.22147 -14.12769 -13.82419 -13.71140 -13.45295 -13.23861 -12.69481 -12.64986 -12.41453 -12.08544 -11.71015 -11.58448 -11.51073 -11.42868 -11.36928 -11.22647 -10.94588 -10.90099 -10.85348 -10.66128 -10.30625 -10.17139 -10.12772 -9.67377 -9.59799 -9.01790 -8.86974 -7.31488 -5.81188 -3.18543 2.71366 3.23867 3.37636 3.41353 3.45308 4.31934 4.34031 4.43220 4.56537 4.66677 4.75586 4.82026 4.99846 5.03733 5.14493 5.16901 5.21994 5.28181 5.32996 5.36817 5.40203 5.43854 5.52215 5.59884 5.62145 5.62461 5.66351 5.69730 5.80350 5.84070 5.88072 5.89690 5.94912 5.96641 6.08222 6.09735 6.29427 6.32724 6.45249 6.58366 6.64993 7.58636 7.92348 8.31340 8.37026 9.14648 9.87011 10.05448 11.36629 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042195 B = 0.002448 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.424837 B =11435.576536 C =11831.367101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.509 3.491 6 O -0.541 6.541 7 N -0.726 5.726 8 C 0.107 3.893 9 C 0.149 3.851 10 N -0.753 5.753 11 C -0.249 4.249 12 H 0.091 0.909 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.082 4.082 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.120 4.120 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -4.263 30.971 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.180 4.180 5 C 0.296 3.704 6 O -0.418 6.418 7 N -0.377 5.377 8 C -0.017 4.017 9 C 0.021 3.979 10 N -0.399 5.399 11 C -0.378 4.378 12 H 0.109 0.891 13 C -0.190 4.190 14 N -0.579 5.579 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.100 4.100 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.157 4.157 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.234 0.766 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.196 0.804 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.526 -3.658 30.844 31.098 hybrid contribution -0.389 0.667 -0.184 0.794 sum 1.137 -2.991 30.660 30.826 Atomic orbital electron populations 1.22004 0.94773 1.01348 1.03083 1.20903 0.96440 0.99702 0.91741 0.90431 1.21841 1.03040 1.00247 0.92850 1.20703 0.79296 0.85832 0.84602 1.90668 1.39762 1.24735 1.86634 1.45965 1.57858 1.27921 1.06000 1.21569 1.00380 0.95800 0.83920 1.20732 0.97634 0.94659 0.84902 1.42541 1.67762 1.27516 1.02100 1.19008 1.29947 1.07396 0.81482 0.89100 1.24680 1.00554 0.98709 0.95051 1.69702 1.50982 1.40289 0.96922 0.86535 0.80293 0.84624 0.77043 1.20914 1.21574 1.20185 1.21210 0.95085 0.99613 0.94092 1.21631 1.00591 0.99356 0.93735 1.21536 0.95618 1.00708 0.97849 1.21541 0.95813 1.00724 0.97715 1.21523 1.00072 0.99387 0.94715 1.21679 0.95315 1.00969 0.97723 0.93471 0.92745 0.90639 0.89008 0.88717 0.76574 0.91495 0.91491 0.94949 0.95003 0.80397 0.92939 0.91195 0.91995 0.91591 0.92142 0.92266 0.92369 0.92094 0.92090 0.92178 0.91675 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.58 37.16 0.32 -1.23 16 2 C -0.07 -0.63 1.62 -90.62 -0.15 -0.77 16 3 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 4 C -0.14 -1.23 4.96 -27.88 -0.14 -1.37 16 5 C 0.51 6.59 7.55 -10.98 -0.08 6.51 16 6 O -0.54 -9.07 13.96 5.55 0.08 -8.99 16 7 N -0.73 -9.18 5.56 -60.30 -0.33 -9.52 16 8 C 0.11 1.73 5.79 -4.04 -0.02 1.71 16 9 C 0.15 2.77 6.37 -4.04 -0.03 2.74 16 10 N -0.75 -18.00 5.41 -59.91 -0.32 -18.32 16 11 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 12 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 13 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 14 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 15 Si 0.89 22.29 27.74 -169.99 -4.71 17.58 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 18 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 19 C -0.08 -0.58 1.78 -90.62 -0.16 -0.75 16 20 C -0.12 -0.81 4.85 -26.73 -0.13 -0.94 16 21 C -0.12 -0.74 5.92 -26.74 -0.16 -0.90 16 22 C -0.12 -0.73 5.92 -26.74 -0.16 -0.89 16 23 C -0.12 -0.73 5.92 -26.76 -0.16 -0.89 16 24 C -0.12 -0.80 4.85 -26.76 -0.13 -0.93 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 27 H 0.07 0.97 5.95 -51.93 -0.31 0.66 16 28 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.09 0.68 6.17 -51.93 -0.32 0.36 16 30 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.41 6.32 -51.93 -0.33 0.08 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -32.82 359.22 -8.90 -41.72 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.54 Total: 5.43 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.25 Total: -4.84 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.12 Total: -56.31 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.82 -8.90 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135227963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.852 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds