Wall clock time and date at job start Tue Mar 31 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 C 1.50704 * 109.47487 * 295.00084 * 4 2 1 6 6 O 1.21279 * 119.99546 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00119 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99640 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47007 * 180.02562 * 8 7 5 10 10 N 1.46497 * 109.47007 * 180.02562 * 9 8 7 11 11 C 1.36944 * 119.99304 * 180.02562 * 10 9 8 12 12 H 1.07988 * 120.00678 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99484 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 119.99816 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47187 * 60.00132 * 15 13 11 17 17 H 1.48506 * 109.47354 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47546 * 299.99720 * 15 13 11 19 19 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 29 29 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 30 30 H 0.96993 * 119.99807 * 359.97438 * 7 5 4 31 31 H 1.09007 * 109.47018 * 299.99619 * 8 7 5 32 32 H 1.08991 * 109.47876 * 60.00147 * 8 7 5 33 33 H 1.08996 * 109.46945 * 300.00071 * 9 8 7 34 34 H 1.08998 * 109.47291 * 59.99810 * 9 8 7 35 35 H 0.96993 * 120.00553 * 359.97438 * 10 9 8 36 36 H 0.96997 * 119.99599 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.46862 * 300.00565 * 19 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 42 42 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 43 43 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 46 46 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 47 47 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9844 -0.3918 3.7002 8 6 1.5964 0.3646 4.8933 9 6 2.1065 -0.3566 6.1426 10 7 1.7179 0.3995 7.3358 11 6 2.0674 -0.0562 8.5789 12 1 2.6291 -0.9730 8.6798 13 6 1.6997 0.6604 9.7095 14 7 1.0155 1.7782 9.5865 15 14 2.1757 0.0385 11.4053 16 1 3.6548 -0.0508 11.5026 17 1 1.6671 0.9771 12.4376 18 1 1.5832 -1.3055 11.6241 19 6 2.0400 -0.7212 -1.2492 20 6 3.5700 -0.7206 -1.2495 21 6 4.0800 -1.4413 -2.4990 22 6 3.5695 -0.7199 -3.7480 23 6 2.0395 -0.7206 -3.7477 24 6 1.5295 0.0002 -2.4982 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.4877 -1.2160 3.7909 31 1 2.0310 1.3632 4.8477 32 1 0.5101 0.4428 4.9367 33 1 1.6723 -1.3553 6.1884 34 1 3.1928 -0.4344 6.0992 35 1 1.2138 1.2232 7.2452 36 1 0.7589 2.2791 10.3765 37 1 1.6766 -1.7488 -1.2492 38 1 3.9337 -1.2342 -0.3595 39 1 3.9329 0.3072 -1.2497 40 1 5.1700 -1.4413 -2.4990 41 1 3.7171 -2.4691 -2.4993 42 1 3.9324 0.3078 -3.7478 43 1 3.9333 -1.2331 -4.6382 44 1 1.6758 -0.2070 -4.6377 45 1 1.6766 -1.7484 -3.7479 46 1 1.8924 1.0280 -2.4980 47 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135227964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:40 Heat of formation + Delta-G solvation = -69.557801 kcal Electronic energy + Delta-G solvation = -22036.130297 eV Core-core repulsion = 18831.279929 eV Total energy + Delta-G solvation = -3204.850368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07754 -38.85662 -35.83096 -34.79572 -33.79478 -31.36677 -31.12780 -29.86067 -28.45285 -26.93106 -23.94648 -23.21006 -22.64060 -21.46944 -20.68373 -20.03380 -19.71838 -17.35104 -16.98637 -15.82196 -15.69815 -15.37715 -14.84759 -14.58157 -14.42637 -14.14213 -14.04995 -13.79400 -13.47411 -13.23012 -13.11709 -12.88736 -12.64211 -12.34377 -12.03447 -11.65043 -11.47628 -11.39188 -11.31945 -11.15799 -11.09589 -10.86454 -10.80861 -10.79146 -10.62107 -10.26543 -10.15201 -10.08987 -9.81141 -9.51293 -8.96162 -8.77627 -6.99401 -5.79412 -3.10205 2.80364 3.33335 3.42710 3.47225 3.48587 4.35590 4.37836 4.46563 4.58369 4.71542 4.81062 4.86587 5.03841 5.07563 5.19585 5.20431 5.24957 5.32390 5.38527 5.42706 5.50267 5.55684 5.59197 5.64352 5.67283 5.72792 5.79839 5.83821 5.87297 5.91811 5.93174 5.97830 5.98532 6.11495 6.12662 6.18236 6.34066 6.40525 6.55455 6.71586 6.78651 7.65217 7.68563 8.37784 8.41460 9.49301 10.04381 10.39119 11.43096 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046294 B = 0.002294 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.689783 B =12202.910940 C =12591.335914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.508 3.492 6 O -0.540 6.540 7 N -0.726 5.726 8 C 0.111 3.889 9 C 0.145 3.855 10 N -0.730 5.730 11 C -0.245 4.245 12 H 0.071 0.929 13 C -0.013 4.013 14 N -0.931 5.931 15 Si 0.911 3.089 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.285 1.285 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.399 0.601 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -7.827 -27.620 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.180 4.180 5 C 0.294 3.706 6 O -0.417 6.417 7 N -0.378 5.378 8 C -0.013 4.013 9 C 0.017 3.983 10 N -0.375 5.375 11 C -0.376 4.376 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.579 5.579 15 Si 0.742 3.258 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.100 4.100 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.153 4.153 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.724 -7.159 -27.540 28.698 hybrid contribution 0.373 -0.489 1.075 1.239 sum 4.097 -7.648 -26.465 27.851 Atomic orbital electron populations 1.22005 0.94758 1.01320 1.03124 1.20900 0.96461 0.99714 0.91717 0.90413 1.21837 1.02951 1.00228 0.92955 1.20680 0.79398 0.85873 0.84601 1.90671 1.39741 1.24679 1.86602 1.46000 1.57798 1.27806 1.06171 1.21550 1.00477 0.95689 0.83593 1.20755 0.97018 0.94608 0.85958 1.42191 1.67041 1.27868 1.00387 1.19151 1.29349 1.05700 0.83375 0.91091 1.24793 1.00757 0.97326 0.98025 1.69662 1.42988 1.16435 1.28803 0.86213 0.78002 0.77718 0.83887 1.21188 1.21609 1.21193 1.21209 0.95057 0.99596 0.94127 1.21690 0.95346 1.00975 0.97673 1.21530 1.00044 0.99374 0.94735 1.21541 0.95832 1.00728 0.97688 1.21537 0.95601 1.00698 0.97866 1.21631 1.00607 0.99364 0.93714 0.90561 0.92762 0.93513 0.89106 0.88807 0.76789 0.91426 0.91422 0.95871 0.95868 0.78007 0.93306 0.91230 0.91682 0.91882 0.92209 0.92120 0.92090 0.92392 0.92274 0.92158 0.91978 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.58 37.16 0.32 -1.31 16 2 C -0.07 -0.66 1.62 -90.63 -0.15 -0.81 16 3 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 4 C -0.14 -1.31 4.96 -27.88 -0.14 -1.45 16 5 C 0.51 6.98 7.55 -10.98 -0.08 6.89 16 6 O -0.54 -9.53 13.96 5.56 0.08 -9.45 16 7 N -0.73 -9.83 5.56 -60.29 -0.33 -10.17 16 8 C 0.11 1.93 5.79 -4.04 -0.02 1.90 16 9 C 0.14 2.86 6.37 -4.04 -0.03 2.84 16 10 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 11 C -0.24 -6.89 9.99 -15.05 -0.15 -7.04 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.37 5.50 -17.42 -0.10 -0.46 16 14 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 15 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.08 -0.61 1.78 -90.62 -0.16 -0.77 16 20 C -0.12 -0.84 4.86 -26.73 -0.13 -0.97 16 21 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 22 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 23 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 24 C -0.12 -0.85 4.85 -26.73 -0.13 -0.98 16 25 H 0.08 1.03 5.95 -51.93 -0.31 0.72 16 26 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.72 6.17 -51.93 -0.32 0.40 16 30 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.39 10.51 7.67 -40.82 -0.31 10.19 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -32.19 362.34 -9.26 -41.45 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.58 Total: 7.07 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.24 Total: -4.93 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.05 Total: -56.98 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.19 -9.26 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135227964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.107 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds