Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 C 1.50704 * 109.47487 * 295.00084 * 4 2 1 6 6 O 1.21279 * 119.99546 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00119 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99640 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47007 * 180.02562 * 8 7 5 10 10 N 1.46497 * 109.47007 * 180.02562 * 9 8 7 11 11 C 1.36944 * 119.99304 * 180.02562 * 10 9 8 12 12 H 1.07988 * 120.00678 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99484 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 119.99816 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47187 * 60.00132 * 15 13 11 17 17 H 1.48506 * 109.47354 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47546 * 299.99720 * 15 13 11 19 19 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 29 29 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 30 30 H 0.96993 * 119.99807 * 359.97438 * 7 5 4 31 31 H 1.09007 * 109.47018 * 299.99619 * 8 7 5 32 32 H 1.08991 * 109.47876 * 60.00147 * 8 7 5 33 33 H 1.08996 * 109.46945 * 300.00071 * 9 8 7 34 34 H 1.08998 * 109.47291 * 59.99810 * 9 8 7 35 35 H 0.96993 * 120.00553 * 359.97438 * 10 9 8 36 36 H 0.96997 * 119.99599 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.46862 * 300.00565 * 19 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 42 42 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 43 43 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 46 46 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 47 47 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9844 -0.3918 3.7002 8 6 1.5964 0.3646 4.8933 9 6 2.1065 -0.3566 6.1426 10 7 1.7179 0.3995 7.3358 11 6 2.0674 -0.0562 8.5789 12 1 2.6291 -0.9730 8.6798 13 6 1.6997 0.6604 9.7095 14 7 1.0155 1.7782 9.5865 15 14 2.1757 0.0385 11.4053 16 1 3.6548 -0.0508 11.5026 17 1 1.6671 0.9771 12.4376 18 1 1.5832 -1.3055 11.6241 19 6 2.0400 -0.7212 -1.2492 20 6 3.5700 -0.7206 -1.2495 21 6 4.0800 -1.4413 -2.4990 22 6 3.5695 -0.7199 -3.7480 23 6 2.0395 -0.7206 -3.7477 24 6 1.5295 0.0002 -2.4982 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.4877 -1.2160 3.7909 31 1 2.0310 1.3632 4.8477 32 1 0.5101 0.4428 4.9367 33 1 1.6723 -1.3553 6.1884 34 1 3.1928 -0.4344 6.0992 35 1 1.2138 1.2232 7.2452 36 1 0.7589 2.2791 10.3765 37 1 1.6766 -1.7488 -1.2492 38 1 3.9337 -1.2342 -0.3595 39 1 3.9329 0.3072 -1.2497 40 1 5.1700 -1.4413 -2.4990 41 1 3.7171 -2.4691 -2.4993 42 1 3.9324 0.3078 -3.7478 43 1 3.9333 -1.2331 -4.6382 44 1 1.6758 -0.2070 -4.6377 45 1 1.6766 -1.7484 -3.7479 46 1 1.8924 1.0280 -2.4980 47 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135227964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = -89.881320 kcal Electronic energy + Delta-G solvation = -22037.011591 eV Core-core repulsion = 18831.279929 eV Total energy + Delta-G solvation = -3205.731662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06220 -39.63960 -37.36499 -35.72663 -35.35039 -33.18299 -31.75756 -30.70797 -29.64525 -28.18179 -25.59245 -24.21186 -23.24416 -23.02300 -21.63820 -20.66079 -20.55378 -19.31548 -18.09098 -16.98534 -16.81662 -16.47979 -16.28758 -15.82773 -15.27567 -15.14289 -15.07050 -14.90937 -14.73252 -14.50470 -14.14319 -14.05912 -13.32516 -13.21408 -13.04700 -12.96302 -12.68237 -12.60386 -12.52385 -12.29740 -12.12975 -12.01296 -11.96564 -11.89236 -11.86063 -11.53287 -11.23351 -10.98411 -10.94296 -10.66944 -10.60975 -10.07350 -9.07770 -7.97496 -5.29264 1.47840 1.51845 1.57969 1.70801 2.17870 2.58287 3.36315 3.68250 3.74727 3.84639 3.98411 4.03773 4.08078 4.17985 4.21814 4.26165 4.43520 4.49548 4.52479 4.58997 4.60950 4.71843 4.72620 4.76382 4.80028 4.86569 4.97066 5.01949 5.07577 5.12739 5.13188 5.24637 5.29371 5.33887 5.37477 5.38501 5.43787 5.47269 5.48933 5.54954 5.63392 5.71731 6.23058 6.61957 7.28996 7.33303 8.01101 8.24062 9.25973 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046294 B = 0.002294 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.689783 B =12202.910940 C =12591.335914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.066 4.066 3 H 0.054 0.946 4 C -0.129 4.129 5 C 0.504 3.496 6 O -0.584 6.584 7 N -0.715 5.715 8 C 0.128 3.872 9 C 0.149 3.851 10 N -0.748 5.748 11 C -0.250 4.250 12 H 0.084 0.916 13 C -0.079 4.079 14 N -0.971 5.971 15 Si 0.981 3.019 16 H -0.275 1.275 17 H -0.297 1.297 18 H -0.275 1.275 19 C -0.072 4.072 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.117 4.117 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.417 0.583 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.373 0.627 36 H 0.252 0.748 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 -10.399 -28.598 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.169 4.169 5 C 0.292 3.708 6 O -0.464 6.464 7 N -0.368 5.368 8 C 0.003 3.997 9 C 0.023 3.977 10 N -0.392 5.392 11 C -0.381 4.381 12 H 0.101 0.899 13 C -0.271 4.271 14 N -0.621 5.621 15 Si 0.809 3.191 16 H -0.200 1.200 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.091 4.091 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.154 4.154 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.254 0.746 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.097 -9.799 -28.559 30.620 hybrid contribution -0.048 0.312 1.279 1.317 sum 5.049 -9.488 -27.280 29.321 Atomic orbital electron populations 1.21955 0.95598 1.01724 1.01673 1.20857 0.95727 0.98895 0.93040 0.92768 1.21886 1.04570 1.00404 0.90017 1.21535 0.78234 0.85507 0.85490 1.90669 1.41657 1.26864 1.87188 1.45837 1.57876 1.28136 1.04999 1.21090 0.99061 0.95124 0.84438 1.20851 0.97660 0.94500 0.84736 1.42444 1.67052 1.27993 1.01673 1.19627 1.28343 1.05729 0.84425 0.89861 1.25716 1.01458 0.97801 1.02139 1.69840 1.44861 1.18000 1.29442 0.85100 0.78028 0.77184 0.78741 1.20046 1.22315 1.20055 1.21128 0.95465 0.99679 0.92794 1.21698 0.94767 1.00667 0.98594 1.21522 1.00325 0.99504 0.94158 1.21555 0.95658 1.00528 0.98173 1.21520 0.95743 1.00839 0.97358 1.21632 1.00491 0.98989 0.94337 0.93937 0.92287 0.92097 0.86418 0.86337 0.74635 0.93281 0.93260 0.94491 0.94490 0.79531 0.93893 0.90087 0.90710 0.92924 0.91785 0.91462 0.92730 0.91617 0.92020 0.91593 0.93049 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.58 71.98 0.62 -2.51 16 2 C -0.07 -1.19 1.62 -10.80 -0.02 -1.21 16 3 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 4 C -0.13 -2.11 4.96 29.85 0.15 -1.96 16 5 C 0.50 13.40 7.55 87.66 0.66 14.06 16 6 O -0.58 -21.13 13.96 -3.02 -0.04 -21.17 16 7 N -0.72 -18.37 5.56 -463.05 -2.57 -20.94 16 8 C 0.13 4.46 5.79 86.38 0.50 4.96 16 9 C 0.15 5.75 6.37 86.38 0.55 6.30 16 10 N -0.75 -38.58 5.60 -343.45 -1.92 -40.51 16 11 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 12 H 0.08 4.34 7.83 -2.92 -0.02 4.31 16 13 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 14 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 15 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C -0.07 -0.94 1.78 -10.79 -0.02 -0.96 16 20 C -0.12 -1.42 4.86 30.59 0.15 -1.27 16 21 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 22 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 23 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 24 C -0.12 -1.58 4.85 30.60 0.15 -1.44 16 25 H 0.04 1.17 5.95 -2.38 -0.01 1.16 16 26 H 0.06 1.11 6.43 -2.39 -0.02 1.10 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.12 1.41 6.17 -2.39 -0.01 1.39 16 30 H 0.42 7.64 8.47 -92.71 -0.79 6.86 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 36 H 0.25 15.21 8.31 -92.71 -0.77 14.43 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.74 6.32 -2.39 -0.02 0.72 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.88 6.43 -2.39 -0.02 0.87 16 Total: -1.00 -70.41 362.34 1.80 -68.61 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.55 Total: 30.71 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.59 Total: -4.49 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -4.21 Total: -121.59 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.04 Total: -21.17 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.41 1.80 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135227964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.276 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds