Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.53008 * 109.46698 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46772 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46864 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49534 * 243.74299 * 14 13 12 16 16 C 1.53002 * 117.49784 * 175.08666 * 14 13 12 17 17 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 28 28 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 29 29 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 30 30 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 31 31 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 32 32 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 33 33 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 34 34 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 35 35 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 36 36 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 37 37 H 1.09004 * 109.46904 * 299.99462 * 12 11 9 38 38 H 1.08997 * 109.47241 * 60.00272 * 12 11 9 39 39 H 1.08998 * 109.47134 * 299.99916 * 13 12 11 40 40 H 1.08998 * 109.47153 * 59.99465 * 13 12 11 41 41 H 1.08996 * 115.55262 * 29.41616 * 14 13 12 42 42 H 1.09002 * 117.50138 * 0.02562 * 15 14 13 43 43 H 1.09002 * 117.49734 * 145.02184 * 15 14 13 44 44 H 1.09000 * 117.49868 * 214.98165 * 16 14 13 45 45 H 1.09006 * 117.49858 * 359.97438 * 16 14 13 46 46 H 0.97004 * 119.99747 * 95.00774 * 17 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3598 -1.1494 1.7512 13 6 7.9752 -1.9031 2.9319 14 6 9.3539 -1.3193 3.2468 15 6 10.5664 -2.2353 3.0686 16 6 10.0879 -1.8631 4.4742 17 7 2.0183 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0403 2.4244 20 6 2.6122 -0.6617 3.5091 21 7 2.9205 -1.9400 3.4511 22 14 2.7899 0.2699 5.1184 23 1 4.1540 0.8503 5.2062 24 1 1.7835 1.3605 5.1727 25 1 2.5735 -0.6603 6.2554 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 3.6264 -0.6885 -3.4657 32 1 5.1509 -1.1482 -2.6697 33 1 3.7724 -2.2740 -2.6699 34 1 3.6648 -2.0583 0.2386 35 1 5.3354 -1.6299 2.3092 36 1 6.0816 -2.7879 1.1820 37 1 8.0052 -1.2522 0.8789 38 1 7.2584 -0.0945 2.0062 39 1 7.3299 -1.8009 3.8044 40 1 8.0765 -2.9579 2.6766 41 1 9.4822 -0.2629 3.0107 42 1 10.3819 -3.2537 2.7267 43 1 11.4925 -1.7815 2.7157 44 1 10.6993 -1.1645 5.0454 45 1 9.5883 -2.6365 5.0576 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135246141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -27.537456 kcal Electronic energy + Delta-G solvation = -23407.263497 eV Core-core repulsion = 20204.235268 eV Total energy + Delta-G solvation = -3203.028229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.34733 -37.63029 -36.86311 -34.38173 -33.27908 -32.44191 -30.59486 -28.34436 -27.42067 -26.36581 -23.50432 -22.61802 -22.27795 -20.68938 -20.32077 -20.25131 -19.38147 -17.39657 -16.40960 -15.78870 -15.50445 -15.13511 -14.88808 -14.31599 -14.06893 -13.76631 -13.59356 -13.24056 -13.06859 -12.93226 -12.27953 -12.14737 -11.87145 -11.75842 -11.70841 -11.57780 -11.45568 -11.36499 -11.06188 -10.77042 -10.70670 -10.47769 -10.42542 -10.36471 -10.11289 -10.07873 -10.02654 -9.68963 -9.18228 -9.09621 -8.95791 -8.35301 -7.01022 -6.10923 -3.09841 3.39343 3.52241 3.54977 3.68399 3.83317 3.91107 4.65158 4.75849 5.00390 5.02362 5.05597 5.32000 5.36782 5.41726 5.48867 5.56052 5.58458 5.63208 5.65372 5.71671 5.81161 5.89747 5.92747 5.95036 5.98111 6.08491 6.14029 6.16103 6.17993 6.19574 6.32199 6.32557 6.39918 6.47345 6.47463 6.54124 6.70956 6.79803 6.81371 6.99601 7.18677 7.81731 8.20069 8.71974 8.95108 9.19483 10.04327 10.20651 11.35723 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.005820 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.667573 B = 4809.669071 C = 6647.982342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.702 5.702 9 C 0.527 3.473 10 O -0.565 6.565 11 C -0.147 4.147 12 C -0.092 4.092 13 C -0.090 4.090 14 C -0.146 4.146 15 C -0.184 4.184 16 C -0.185 4.185 17 N -0.727 5.727 18 C -0.316 4.316 19 H 0.061 0.939 20 C -0.043 4.043 21 N -0.943 5.943 22 Si 1.073 2.927 23 H -0.295 1.295 24 H -0.297 1.297 25 H -0.289 1.289 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.398 0.602 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.361 0.639 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 -1.951 -6.106 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.173 4.173 5 C 0.044 3.956 6 H 0.100 0.900 7 C -0.220 4.220 8 N -0.354 5.354 9 C 0.315 3.685 10 O -0.445 6.445 11 C -0.187 4.187 12 C -0.130 4.130 13 C -0.128 4.128 14 C -0.164 4.164 15 C -0.221 4.221 16 C -0.222 4.222 17 N -0.372 5.372 18 C -0.447 4.447 19 H 0.079 0.921 20 C -0.240 4.240 21 N -0.590 5.590 22 Si 0.905 3.095 23 H -0.223 1.223 24 H -0.224 1.224 25 H -0.215 1.215 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.235 0.765 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.195 0.805 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.217 -1.202 -4.849 8.778 hybrid contribution -0.826 -0.409 -1.357 1.640 sum 6.391 -1.611 -6.206 9.053 Atomic orbital electron populations 1.22408 0.99296 1.00611 1.00009 1.20205 0.91593 0.95679 0.85970 0.93390 1.22218 0.94244 1.01417 0.99410 1.20768 0.92340 0.97336 0.85138 0.90041 1.22199 1.01743 1.00701 0.97317 1.45996 1.18153 1.37518 1.33772 1.20566 0.80980 0.83301 0.83635 1.90595 1.62229 1.31506 1.60184 1.21748 0.98418 0.99524 0.99019 1.21211 0.94343 1.00073 0.97415 1.21213 0.93627 0.98899 0.99039 1.22373 0.93133 0.98980 1.01899 1.23022 0.98541 1.00503 1.00081 1.22965 1.04292 1.03919 0.90991 1.42470 1.79078 1.09284 1.06336 1.20044 1.40708 0.94961 0.88971 0.92076 1.25540 0.99867 0.97512 1.01081 1.70930 1.52329 1.07898 1.27832 0.83295 0.75937 0.74279 0.75949 1.22330 1.22431 1.21509 0.93762 0.92832 0.94484 0.91957 0.90840 0.92227 0.92434 0.92935 0.76531 0.86345 0.90216 0.92090 0.91460 0.90927 0.92092 0.87888 0.88984 0.89301 0.89172 0.88812 0.80455 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 2 C 0.18 3.32 2.89 -67.93 -0.20 3.12 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -2.05 4.43 -26.73 -0.12 -2.17 16 5 C 0.15 2.46 2.58 -67.93 -0.17 2.28 16 6 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 7 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 8 N -0.70 -12.65 3.80 -53.81 -0.20 -12.86 16 9 C 0.53 10.46 7.79 -10.98 -0.09 10.37 16 10 O -0.57 -12.62 15.64 5.56 0.09 -12.54 16 11 C -0.15 -2.66 5.70 -27.88 -0.16 -2.82 16 12 C -0.09 -1.54 4.46 -26.73 -0.12 -1.66 16 13 C -0.09 -1.32 5.49 -26.73 -0.15 -1.46 16 14 C -0.15 -1.90 5.73 -90.62 -0.52 -2.42 16 15 C -0.18 -2.07 10.18 -26.70 -0.27 -2.34 16 16 C -0.18 -2.13 10.25 -26.69 -0.27 -2.40 16 17 N -0.73 -16.40 3.84 -53.43 -0.21 -16.61 16 18 C -0.32 -8.29 9.93 -15.06 -0.15 -8.44 16 19 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 20 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 21 N -0.94 -25.88 13.44 55.49 0.75 -25.13 16 22 Si 1.07 25.29 29.92 -169.99 -5.09 20.20 16 23 H -0.30 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 7.13 6.51 -40.82 -0.27 6.87 16 35 H 0.12 2.50 7.88 -51.93 -0.41 2.09 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.10 1.36 8.08 -51.93 -0.42 0.94 16 42 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.36 8.12 4.54 -40.82 -0.19 7.93 16 47 H 0.25 6.63 6.77 -40.82 -0.28 6.36 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -29.06 377.10 -9.32 -38.38 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -8.74 Total: 16.42 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.61 Total: -13.56 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.34 Total: -54.60 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.09 Total: 20.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.06 -9.32 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135246141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.844 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds