Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.36939 * 120.00530 * 204.99728 * 8 5 4 10 10 H 1.07999 * 119.99437 * 0.02562 * 9 8 5 11 11 C 1.38808 * 120.00276 * 179.97438 * 9 8 5 12 12 N 1.31624 * 120.00057 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00117 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46817 * 60.00345 * 13 11 9 15 15 H 1.48498 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47235 * 300.00470 * 13 11 9 17 17 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 18 18 C 1.34777 * 119.99688 * 274.99602 * 17 2 1 19 19 O 1.21279 * 119.99974 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99799 * 180.02562 * 18 17 2 21 21 C 1.53004 * 109.46982 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47151 * 180.02562 * 21 20 18 23 23 C 1.52993 * 109.47448 * 179.97438 * 22 21 20 24 24 C 1.52992 * 117.50275 * 243.74753 * 23 22 21 25 25 C 1.52995 * 117.50448 * 175.08479 * 23 22 21 26 26 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 28 28 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 32 32 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 33 33 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 34 34 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 35 35 H 0.97002 * 119.99591 * 179.97438 * 12 11 9 36 36 H 0.96993 * 119.99992 * 94.99462 * 17 2 1 37 37 H 1.08995 * 109.47366 * 299.99979 * 20 18 17 38 38 H 1.08996 * 109.47113 * 60.00496 * 20 18 17 39 39 H 1.08995 * 109.46885 * 300.00068 * 21 20 18 40 40 H 1.08997 * 109.47269 * 59.99750 * 21 20 18 41 41 H 1.09004 * 109.46652 * 300.00046 * 22 21 20 42 42 H 1.08997 * 109.47411 * 59.99625 * 22 21 20 43 43 H 1.09006 * 115.54568 * 29.41567 * 23 22 21 44 44 H 1.09006 * 117.49727 * 359.97438 * 24 23 22 45 45 H 1.09005 * 117.50411 * 145.01418 * 24 23 22 46 46 H 1.09002 * 117.50224 * 214.98144 * 25 23 22 47 47 H 1.09000 * 117.49614 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9386 -0.1791 -0.1881 11 6 5.9520 -1.6685 1.3527 12 7 5.2885 -2.6512 1.9241 13 14 7.6442 -1.1926 1.9847 14 1 7.6254 0.2235 2.4318 15 1 8.0102 -2.0679 3.1271 16 1 8.6425 -1.3552 0.8974 17 7 2.0184 -0.6907 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1582 2.4117 20 6 2.6500 -0.7288 3.5874 21 6 2.7008 0.2542 4.7589 22 6 3.2120 -0.4668 6.0078 23 6 3.2634 0.5161 7.1790 24 6 4.6355 0.8284 7.7796 25 6 3.6410 -0.0410 8.5530 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 5.1508 -1.1485 -2.6699 32 1 3.7721 -2.2741 -2.6701 33 1 3.6262 -0.6886 -3.4658 34 1 3.6647 -2.0585 0.2385 35 1 5.6785 -3.1285 2.6731 36 1 2.2490 -1.6319 1.1525 37 1 1.9778 -1.5510 3.8325 38 1 3.6493 -1.1205 3.3978 39 1 3.3728 1.0767 4.5140 40 1 1.7014 0.6456 4.9483 41 1 2.5403 -1.2896 6.2527 42 1 4.2115 -0.8580 5.8180 43 1 2.5323 1.3240 7.1472 44 1 5.5016 0.3331 7.3405 45 1 4.8071 1.8416 8.1432 46 1 3.1587 0.4005 9.4251 47 1 3.8533 -1.1079 8.6224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135246142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -28.565801 kcal Electronic energy + Delta-G solvation = -23403.875887 eV Core-core repulsion = 20200.803065 eV Total energy + Delta-G solvation = -3203.072821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.22999 -37.61035 -36.73721 -34.18351 -33.22753 -32.20908 -30.56460 -28.57743 -27.38204 -26.28352 -23.65232 -22.56555 -22.25656 -20.57956 -20.24835 -20.17168 -19.23642 -17.16963 -16.33245 -15.73050 -15.44530 -15.02738 -14.81626 -14.19030 -13.97409 -13.70197 -13.63514 -13.13142 -12.87740 -12.69500 -12.15446 -12.06802 -11.94044 -11.69161 -11.65662 -11.55594 -11.40405 -11.34905 -10.96814 -10.83060 -10.72050 -10.69492 -10.35141 -10.30656 -10.25840 -10.06549 -9.88679 -9.69991 -9.66852 -8.99708 -8.93915 -8.23807 -6.93739 -5.80289 -3.05907 3.42688 3.46861 3.49387 3.50595 3.87124 3.99937 4.58642 4.77868 5.01900 5.02953 5.14602 5.36685 5.44791 5.49954 5.55170 5.58310 5.64002 5.66770 5.68197 5.72506 5.91080 5.94527 6.00823 6.03992 6.08429 6.14678 6.16083 6.18971 6.22724 6.26873 6.28928 6.40035 6.47294 6.53273 6.59988 6.63520 6.75120 6.86401 6.88118 7.07743 7.31921 7.69737 8.33794 8.40601 9.08039 9.50734 10.05356 10.41260 11.41971 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.005964 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.562960 B = 4693.431412 C = 6505.182015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.226 4.226 10 H 0.066 0.934 11 C -0.010 4.010 12 N -0.934 5.934 13 Si 0.898 3.102 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.289 1.289 17 N -0.699 5.699 18 C 0.529 3.471 19 O -0.571 6.571 20 C -0.145 4.145 21 C -0.094 4.094 22 C -0.090 4.090 23 C -0.146 4.146 24 C -0.183 4.183 25 C -0.186 4.186 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.378 0.622 35 H 0.254 0.746 36 H 0.404 0.596 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 2.026 3.354 8.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.060 3.940 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.357 4.357 10 H 0.084 0.916 11 C -0.206 4.206 12 N -0.583 5.583 13 Si 0.729 3.271 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.216 1.216 17 N -0.351 5.351 18 C 0.317 3.683 19 O -0.451 6.451 20 C -0.184 4.184 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.165 4.165 24 C -0.220 4.220 25 C -0.223 4.223 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.213 0.787 35 H 0.064 0.936 36 H 0.242 0.758 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.934 2.916 3.423 9.120 hybrid contribution 1.116 -0.526 0.404 1.299 sum -6.818 2.390 3.827 8.176 Atomic orbital electron populations 1.22200 0.96548 1.01461 1.01760 1.20757 0.92309 0.97683 0.84888 0.90156 1.22197 0.97741 1.00561 0.96675 1.20274 0.89769 0.95822 0.88173 0.93514 1.22425 1.01489 1.00340 0.98118 1.42446 1.18645 1.39986 1.34823 1.19157 0.93243 1.12921 1.10374 0.91619 1.24560 0.98285 0.98719 0.99002 1.69586 1.37970 1.24624 1.26150 0.86405 0.84861 0.77611 0.78204 1.21403 1.21753 1.21592 1.45992 1.66051 1.14364 1.08730 1.20503 0.75990 0.86889 0.84939 1.90588 1.52085 1.16520 1.85905 1.21704 1.05277 0.98817 0.92652 1.21229 1.01455 0.97924 0.92597 1.21210 1.01849 0.96786 0.92893 1.22366 0.98548 1.01720 0.93829 1.23041 0.93805 1.00582 1.04579 1.22958 1.04429 0.99719 0.95205 0.92926 0.92516 0.92337 0.91822 0.91010 0.92912 0.93630 0.94616 0.78662 0.93620 0.75847 0.90271 0.86244 0.91486 0.92158 0.91806 0.91503 0.87977 0.88724 0.89206 0.89262 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.16 0.35 -1.88 16 2 C 0.15 2.45 2.57 -67.93 -0.17 2.28 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16 5 C 0.17 3.17 2.89 -67.93 -0.20 2.97 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 8 N -0.72 -16.06 3.84 -53.43 -0.21 -16.26 16 9 C -0.23 -5.83 9.93 -15.06 -0.15 -5.98 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -24.68 12.78 55.49 0.71 -23.97 16 13 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 N -0.70 -12.69 3.80 -53.80 -0.20 -12.89 16 18 C 0.53 10.51 7.79 -10.99 -0.09 10.43 16 19 O -0.57 -12.76 15.64 5.56 0.09 -12.67 16 20 C -0.14 -2.60 5.70 -27.88 -0.16 -2.76 16 21 C -0.09 -1.55 4.46 -26.73 -0.12 -1.67 16 22 C -0.09 -1.29 5.50 -26.73 -0.15 -1.44 16 23 C -0.15 -1.89 5.73 -90.63 -0.52 -2.41 16 24 C -0.18 -2.26 10.18 -26.70 -0.27 -2.53 16 25 C -0.19 -2.10 10.25 -26.70 -0.27 -2.38 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.38 8.66 5.70 -40.82 -0.23 8.43 16 35 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.40 7.41 6.51 -40.82 -0.27 7.14 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.12 2.49 7.86 -51.93 -0.41 2.09 16 39 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.03 7.87 -51.93 -0.41 0.63 16 43 H 0.10 1.28 8.08 -51.93 -0.42 0.86 16 44 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -27.83 378.75 -9.38 -37.21 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -8.85 Total: 16.59 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.61 Total: -10.36 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.30 Total: -53.13 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.83 -9.38 -37.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135246142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.649 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds