Wall clock time and date at job start Tue Mar 31 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47659 * 2 1 4 4 C 1.53001 * 109.47434 * 120.00444 * 2 1 3 5 5 C 1.53001 * 109.47204 * 184.99751 * 4 2 1 6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2 7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2 8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2 9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 5 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 5 12 12 C 1.52999 * 109.47004 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47303 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47303 * 179.97438 * 13 12 11 15 15 C 1.53007 * 117.50118 * 243.75042 * 14 13 12 16 16 C 1.52997 * 117.50045 * 175.09186 * 14 13 12 17 17 N 1.46507 * 109.46619 * 240.00124 * 2 1 3 18 18 C 1.36931 * 119.99852 * 85.00105 * 17 2 1 19 19 H 1.08005 * 120.00247 * 359.97438 * 18 17 2 20 20 C 1.38816 * 120.00272 * 179.97438 * 18 17 2 21 21 N 1.31610 * 120.00526 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99506 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47260 * 89.99753 * 22 20 18 24 24 H 1.48504 * 109.46788 * 209.99795 * 22 20 18 25 25 H 1.48503 * 109.46990 * 329.99320 * 22 20 18 26 26 H 1.08992 * 109.47185 * 59.99485 * 1 2 3 27 27 H 1.09001 * 109.47429 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46592 * 299.99564 * 1 2 3 29 29 H 1.08996 * 109.47061 * 64.99418 * 4 2 1 30 30 H 1.08994 * 109.46820 * 304.99531 * 4 2 1 31 31 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.47091 * 299.99643 * 7 5 4 33 33 H 1.08996 * 109.47098 * 60.00014 * 7 5 4 34 34 H 0.97001 * 119.99790 * 24.99549 * 8 5 4 35 35 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 36 36 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 37 37 H 1.09000 * 109.47527 * 299.99994 * 12 11 9 38 38 H 1.09007 * 109.47302 * 59.99534 * 12 11 9 39 39 H 1.08995 * 109.47540 * 300.00020 * 13 12 11 40 40 H 1.09001 * 109.46719 * 60.00219 * 13 12 11 41 41 H 1.09003 * 115.55300 * 29.41551 * 14 13 12 42 42 H 1.09000 * 117.49381 * 359.97438 * 15 14 13 43 43 H 1.09003 * 117.49893 * 145.01651 * 15 14 13 44 44 H 1.09002 * 117.49852 * 214.97816 * 16 14 13 45 45 H 1.09000 * 117.49796 * 359.97438 * 16 14 13 46 46 H 0.97000 * 119.99609 * 264.99961 * 17 2 1 47 47 H 0.97000 * 120.00404 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4385 2.4922 8 7 3.9481 0.7892 1.4923 9 6 5.1592 1.2145 1.0814 10 8 5.9337 0.4350 0.5683 11 6 5.5509 2.6587 1.2598 12 6 6.9640 2.8749 0.7143 13 6 7.3615 4.3413 0.8948 14 6 8.7748 4.5574 0.3499 15 6 9.8589 4.9773 1.3446 16 6 9.3143 5.9890 0.3332 17 7 2.0182 -0.6906 -1.1963 18 6 2.1489 -0.0075 -2.3758 19 1 1.8917 1.0404 -2.4244 20 6 2.6120 -0.6617 -3.5092 21 7 2.7372 -0.0052 -4.6430 22 14 3.0562 -2.4742 -3.4254 23 1 1.8591 -3.2925 -3.7452 24 1 4.1320 -2.7660 -4.4066 25 1 3.5309 -2.8048 -2.0576 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.7517 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 5.1716 -1.3620 2.5378 32 1 3.6548 -1.0596 3.4191 33 1 3.8002 -2.4821 2.3592 34 1 3.3286 1.4127 1.9027 35 1 4.8508 3.2947 0.7179 36 1 5.5280 2.9134 2.3193 37 1 7.6639 2.2390 1.2563 38 1 6.9874 2.6202 -0.3453 39 1 6.6616 4.9770 0.3525 40 1 7.3381 4.5963 1.9543 41 1 9.0694 3.8989 -0.4673 42 1 9.5652 5.1000 2.3871 43 1 10.8668 4.5953 1.1816 44 1 9.9641 6.2723 -0.4948 45 1 8.6622 6.7770 0.7100 46 1 2.2489 -1.6318 -1.1527 47 1 3.0605 -0.4624 -5.4351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135246143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:36 Heat of formation + Delta-G solvation = -30.873715 kcal Electronic energy + Delta-G solvation = -22637.079565 eV Core-core repulsion = 19433.906665 eV Total energy + Delta-G solvation = -3203.172900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.60519 -37.86087 -36.95492 -34.56222 -33.68099 -32.11694 -30.84125 -29.21934 -27.83950 -26.38447 -23.34421 -22.83305 -22.48261 -20.91254 -20.54652 -20.04746 -19.77750 -17.62929 -16.77771 -15.95566 -15.80991 -15.39050 -14.78464 -14.55090 -14.21560 -13.97620 -13.61591 -13.48624 -13.08138 -12.66358 -12.52389 -12.36587 -12.13234 -11.98877 -11.95731 -11.74304 -11.67945 -11.64490 -11.18278 -11.09236 -10.90016 -10.79372 -10.64378 -10.45172 -10.32493 -10.24472 -9.96954 -9.92659 -9.52579 -9.42262 -8.87151 -8.68846 -7.20354 -5.70610 -3.05188 3.03554 3.43657 3.46913 3.48693 3.51666 3.66821 4.49635 4.66163 4.76032 4.78793 4.92276 5.03334 5.09432 5.18171 5.27778 5.31365 5.35144 5.46072 5.54358 5.55838 5.61895 5.68437 5.70326 5.75436 5.79706 5.84334 5.88366 5.91024 5.94058 6.03388 6.13554 6.20581 6.26785 6.28122 6.34790 6.43546 6.45030 6.59460 6.78651 6.89924 7.00551 7.84951 8.04463 8.48247 8.62450 9.26998 10.00104 10.19323 11.48048 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.004143 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.621977 B = 6756.093723 C = 7740.287676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.134 4.134 5 C 0.142 3.858 6 H 0.099 0.901 7 C -0.161 4.161 8 N -0.720 5.720 9 C 0.513 3.487 10 O -0.537 6.537 11 C -0.140 4.140 12 C -0.101 4.101 13 C -0.089 4.089 14 C -0.149 4.149 15 C -0.183 4.183 16 C -0.184 4.184 17 N -0.745 5.745 18 C -0.238 4.238 19 H 0.087 0.913 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.276 1.276 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 7.462 17.752 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.117 0.883 7 C -0.219 4.219 8 N -0.371 5.371 9 C 0.300 3.700 10 O -0.414 6.414 11 C -0.180 4.180 12 C -0.139 4.139 13 C -0.126 4.126 14 C -0.168 4.168 15 C -0.220 4.220 16 C -0.221 4.221 17 N -0.388 5.388 18 C -0.368 4.368 19 H 0.105 0.895 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.203 1.203 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.192 0.808 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.517 7.064 17.191 19.695 hybrid contribution -0.060 -1.009 0.052 1.012 sum 6.457 6.055 17.243 19.382 Atomic orbital electron populations 1.22425 0.99033 1.00814 1.00295 1.20191 0.91700 0.95832 0.85521 0.92789 1.22213 0.93981 1.02025 0.99081 1.20971 0.94873 0.80907 0.99511 0.88342 1.22182 1.01585 0.99976 0.98174 1.45986 1.16921 1.11264 1.62941 1.20600 0.81673 0.90331 0.77438 1.90705 1.51112 1.56877 1.42662 1.21666 0.99403 0.94038 1.02878 1.21306 0.94461 0.95401 1.02765 1.21200 0.94120 0.96922 1.00346 1.22373 0.94858 0.97772 1.01760 1.23034 0.98718 1.04253 0.96007 1.22967 1.04123 0.92951 1.02063 1.42774 1.79584 1.09342 1.07150 1.19002 1.36758 0.95430 0.85566 0.89471 1.24629 1.01380 0.97384 0.95600 1.69689 1.52874 1.35528 1.00251 0.86575 0.77951 0.87015 0.77171 1.21308 1.21831 1.20251 0.92425 0.93656 0.94387 0.90885 0.91621 0.92490 0.93001 0.92010 0.77214 0.88864 0.89531 0.91330 0.90760 0.91408 0.92051 0.87599 0.88966 0.89094 0.88998 0.88919 0.80779 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.49 37.16 0.35 -2.42 16 2 C 0.18 3.22 2.84 -67.93 -0.19 3.02 16 3 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.10 2.01 7.05 -51.93 -0.37 1.65 16 7 C -0.16 -2.12 9.49 37.16 0.35 -1.77 16 8 N -0.72 -10.10 4.45 -53.81 -0.24 -10.34 16 9 C 0.51 8.18 7.80 -10.99 -0.09 8.09 16 10 O -0.54 -11.09 15.64 5.55 0.09 -11.00 16 11 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 12 C -0.10 -1.25 4.46 -26.73 -0.12 -1.37 16 13 C -0.09 -0.87 5.50 -26.73 -0.15 -1.02 16 14 C -0.15 -1.50 5.73 -90.62 -0.52 -2.02 16 15 C -0.18 -1.60 10.18 -26.69 -0.27 -1.87 16 16 C -0.18 -1.61 10.25 -26.70 -0.27 -1.88 16 17 N -0.75 -17.41 4.30 -53.42 -0.23 -17.64 16 18 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 19 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.94 -29.99 13.97 55.49 0.78 -29.22 16 22 Si 0.88 22.95 27.74 -169.99 -4.71 18.24 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 41 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.36 8.42 5.66 -40.82 -0.23 8.19 16 47 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -34.13 380.39 -9.13 -43.26 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.94 Total: 10.80 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.60 Total: -9.83 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.31 Total: -57.19 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.13 -9.13 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135246143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.386 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds