Wall clock time and date at job start Tue Mar 31 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.46626 * 240.00369 * 2 1 3 5 5 C 1.52997 * 109.46646 * 174.99857 * 4 2 1 6 6 H 1.08998 * 109.47339 * 55.00028 * 5 4 2 7 7 C 1.53003 * 109.46881 * 175.00103 * 5 4 2 8 8 N 1.46505 * 109.47089 * 294.99564 * 5 4 2 9 9 C 1.34782 * 119.99551 * 155.00241 * 8 5 4 10 10 O 1.21275 * 120.00117 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99654 * 180.02562 * 9 8 5 12 12 C 1.53000 * 109.46909 * 300.00317 * 11 9 8 13 13 C 1.52997 * 109.46878 * 60.00013 * 11 9 8 14 14 C 1.52992 * 109.46961 * 180.02562 * 11 9 8 15 15 C 1.53001 * 117.50178 * 248.75058 * 14 11 9 16 16 C 1.53005 * 117.49895 * 180.08974 * 14 11 9 17 17 N 1.46492 * 109.47381 * 120.00219 * 2 1 3 18 18 C 1.36932 * 120.00155 * 274.99782 * 17 2 1 19 19 H 1.07999 * 119.99968 * 359.97438 * 18 17 2 20 20 C 1.38817 * 120.00306 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99735 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00154 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46847 * 60.00476 * 22 20 18 24 24 H 1.48503 * 109.47056 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47428 * 300.00184 * 22 20 18 26 26 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46719 * 299.99720 * 1 2 3 28 28 H 1.08993 * 109.47839 * 59.99562 * 1 2 3 29 29 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 30 30 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 31 31 H 1.08998 * 109.47195 * 59.99837 * 7 5 4 32 32 H 1.08997 * 109.47133 * 179.97438 * 7 5 4 33 33 H 1.09003 * 109.46839 * 299.99803 * 7 5 4 34 34 H 0.96996 * 120.00118 * 335.00071 * 8 5 4 35 35 H 1.08993 * 109.47497 * 60.00341 * 12 11 9 36 36 H 1.09003 * 109.46852 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47013 * 299.99591 * 12 11 9 38 38 H 1.09009 * 109.47281 * 59.99696 * 13 11 9 39 39 H 1.08997 * 109.47348 * 179.97438 * 13 11 9 40 40 H 1.09002 * 109.47457 * 300.00260 * 13 11 9 41 41 H 1.09007 * 115.55228 * 34.41878 * 14 11 9 42 42 H 1.09004 * 117.49591 * 359.97438 * 15 14 11 43 43 H 1.08994 * 117.50247 * 145.02001 * 15 14 11 44 44 H 1.09001 * 117.49834 * 214.97879 * 16 14 11 45 45 H 1.08996 * 117.49734 * 359.97438 * 16 14 11 46 46 H 0.97006 * 119.99963 * 94.99930 * 17 2 1 47 47 H 0.96993 * 120.00025 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 1 3.9953 -0.9922 -0.3870 7 6 4.0849 -1.4382 -2.4927 8 7 3.9478 0.7895 -1.4926 9 6 5.1611 1.2136 -1.0869 10 8 5.9358 0.4340 -0.5743 11 6 5.5550 2.6567 -1.2703 12 6 5.5183 3.0102 -2.7584 13 6 4.5764 3.5531 -0.5089 14 6 6.9702 2.8716 -0.7302 15 6 7.1228 3.7207 0.5334 16 6 7.5553 4.2823 -0.8234 17 7 2.0184 -0.6906 1.1961 18 6 2.1492 -0.0076 2.3756 19 1 1.8928 1.0404 2.4241 20 6 2.6125 -0.6618 3.5089 21 7 2.9265 -1.9387 3.4495 22 14 2.7917 0.2702 5.1178 23 1 1.4695 0.8068 5.5288 24 1 3.3018 -0.6480 6.1676 25 1 3.7468 1.3927 4.9360 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8898 29 1 1.7515 -1.7714 -1.2057 30 1 1.6052 -0.2617 -2.1371 31 1 3.6543 -1.0592 -3.4195 32 1 5.1712 -1.3609 -2.5390 33 1 3.7999 -2.4818 -2.3597 34 1 3.3283 1.4129 -1.9030 35 1 4.5103 2.8570 -3.1436 36 1 5.8036 4.0538 -2.8911 37 1 6.2155 2.3715 -3.3008 38 1 4.6024 3.3012 0.5513 39 1 4.8614 4.5968 -0.6411 40 1 3.5682 3.3998 -0.8940 41 1 7.6549 2.0332 -0.8589 42 1 6.2150 4.1266 0.9797 43 1 7.9081 3.4413 1.2357 44 1 8.6249 4.3720 -1.0131 45 1 6.9321 5.0571 -1.2699 46 1 2.2491 -1.6318 1.1524 47 1 3.2498 -2.3960 4.2414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135252289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:41 Heat of formation + Delta-G solvation = -21.228379 kcal Electronic energy + Delta-G solvation = -23926.275052 eV Core-core repulsion = 20723.520405 eV Total energy + Delta-G solvation = -3202.754647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20457 -37.89242 -36.50415 -34.39063 -33.26388 -31.95058 -30.15052 -28.54691 -27.48692 -26.27443 -24.48962 -23.57300 -22.18870 -22.02189 -20.46521 -19.64787 -18.60229 -17.22029 -16.89316 -16.09262 -15.28479 -14.87495 -14.56335 -14.37021 -13.87025 -13.83862 -13.64805 -13.11884 -12.80017 -12.67298 -12.55247 -12.27873 -12.12399 -12.03343 -11.90293 -11.69617 -11.57853 -11.50609 -11.05530 -10.97425 -10.79252 -10.74832 -10.56751 -10.37168 -10.25612 -10.20356 -9.92926 -9.85680 -9.56984 -9.19665 -8.82735 -8.57916 -6.87120 -5.68214 -2.95880 3.09282 3.48260 3.49462 3.52823 3.53761 3.92928 4.56893 4.66161 4.77264 4.91469 5.06379 5.11388 5.18741 5.31924 5.40832 5.48101 5.52094 5.53635 5.63040 5.66267 5.71031 5.74691 5.80428 5.89529 5.94217 5.97850 6.00063 6.05806 6.12771 6.17696 6.18186 6.24933 6.33301 6.39749 6.41032 6.49256 6.61785 6.79371 6.88651 7.01729 7.11443 7.75683 7.93604 8.50226 8.70059 9.61327 10.19187 10.53303 11.54616 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.006367 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.338735 B = 4396.530954 C = 5650.936130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.715 5.715 9 C 0.526 3.474 10 O -0.531 6.531 11 C -0.051 4.051 12 C -0.135 4.135 13 C -0.144 4.144 14 C -0.127 4.127 15 C -0.180 4.180 16 C -0.181 4.181 17 N -0.719 5.719 18 C -0.233 4.233 19 H 0.066 0.934 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 10.534 -14.997 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.366 5.366 9 C 0.311 3.689 10 O -0.406 6.406 11 C -0.054 4.054 12 C -0.192 4.192 13 C -0.201 4.201 14 C -0.145 4.145 15 C -0.216 4.216 16 C -0.218 4.218 17 N -0.361 5.361 18 C -0.364 4.364 19 H 0.084 0.916 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.623 10.057 -14.469 17.990 hybrid contribution -0.214 0.421 0.829 0.954 sum 3.409 10.478 -13.640 17.535 Atomic orbital electron populations 1.22462 0.99640 1.00767 0.99690 1.20211 0.91454 0.95546 0.86579 0.93661 1.22163 0.93907 1.02117 0.98737 1.21006 0.94926 0.80426 0.99735 0.87751 1.22176 1.01444 1.00139 0.98069 1.45947 1.16517 1.11363 1.62797 1.20232 0.81829 0.89368 0.77429 1.90697 1.51162 1.56381 1.42397 1.20239 0.95141 0.93088 0.96969 1.21804 1.02038 1.02120 0.93258 1.21983 0.97987 0.98797 1.01372 1.22027 0.96032 0.94632 1.01854 1.23136 1.03595 1.03877 0.91025 1.22968 1.00828 0.96615 1.01379 1.42376 1.77953 1.10536 1.05244 1.19091 1.36412 0.93584 0.87354 0.91634 1.24684 1.02242 0.95928 0.97903 1.69634 1.50920 1.08631 1.28835 0.86349 0.77614 0.78745 0.83983 1.21459 1.21745 1.21366 0.93565 0.92953 0.94781 0.90744 0.92188 0.93254 0.92623 0.91869 0.77479 0.92234 0.91620 0.92164 0.91073 0.91769 0.92036 0.86865 0.88097 0.88971 0.89083 0.88978 0.78364 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.48 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 6 H 0.10 2.28 7.06 -51.93 -0.37 1.91 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.90 16 8 N -0.72 -10.59 4.23 -53.80 -0.23 -10.82 16 9 C 0.53 8.80 6.45 -10.98 -0.07 8.73 16 10 O -0.53 -11.41 15.31 5.56 0.09 -11.33 16 11 C -0.05 -0.65 0.72 -155.66 -0.11 -0.77 16 12 C -0.13 -1.31 8.21 37.16 0.31 -1.00 16 13 C -0.14 -1.72 6.97 37.16 0.26 -1.47 16 14 C -0.13 -1.70 4.75 -90.62 -0.43 -2.13 16 15 C -0.18 -2.28 9.57 -26.69 -0.26 -2.54 16 16 C -0.18 -1.88 9.38 -26.69 -0.25 -2.14 16 17 N -0.72 -17.76 4.49 -53.43 -0.24 -18.00 16 18 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 22 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.39 4.68 7.44 -40.82 -0.30 4.37 16 35 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 36 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.03 6.97 -51.92 -0.36 0.67 16 39 H 0.06 0.63 7.07 -51.93 -0.37 0.26 16 40 H 0.06 0.67 7.57 -51.93 -0.39 0.28 16 41 H 0.11 1.73 7.47 -51.92 -0.39 1.34 16 42 H 0.10 1.27 5.85 -51.93 -0.30 0.97 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.83 7.07 -51.93 -0.37 0.47 16 46 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -32.74 370.48 -8.20 -40.94 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.53 Total: 13.30 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.57 Total: -9.70 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.26 Total: -56.86 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.74 -8.20 -40.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135252289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.716 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds