Wall clock time and date at job start Tue Mar 31 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47418 * 2 1 4 4 C 1.52998 * 109.47166 * 239.99973 * 2 1 3 5 5 C 1.53006 * 109.46887 * 174.91172 * 4 2 1 6 6 H 1.09000 * 109.47127 * 54.15540 * 5 4 2 7 7 C 1.53001 * 109.47137 * 294.15178 * 5 4 2 8 8 N 1.46504 * 109.46928 * 174.15369 * 5 4 2 9 9 C 1.34777 * 120.00172 * 206.62322 * 8 5 4 10 10 O 1.21285 * 119.99426 * 5.22405 * 9 8 5 11 11 C 1.50697 * 120.00167 * 185.22567 * 9 8 5 12 12 C 1.53002 * 109.47151 * 305.00628 * 11 9 8 13 13 C 1.53001 * 109.47075 * 65.00472 * 11 9 8 14 14 C 1.53003 * 109.47054 * 185.00512 * 11 9 8 15 15 C 1.52999 * 117.49831 * 248.74707 * 14 11 9 16 16 C 1.53001 * 117.49972 * 180.08929 * 14 11 9 17 17 N 1.46501 * 109.47050 * 119.99999 * 2 1 3 18 18 C 1.36939 * 119.99970 * 273.22375 * 17 2 1 19 19 H 1.08006 * 119.99767 * 5.16384 * 18 17 2 20 20 C 1.38806 * 120.00288 * 185.15970 * 18 17 2 21 21 N 1.31622 * 119.99875 * 5.24015 * 20 18 17 22 22 Si 1.86795 * 120.00309 * 185.23503 * 20 18 17 23 23 H 1.48502 * 109.47380 * 90.00143 * 22 20 18 24 24 H 1.48501 * 109.47317 * 210.00419 * 22 20 18 25 25 H 1.48497 * 109.47282 * 330.00077 * 22 20 18 26 26 H 1.09001 * 109.47191 * 300.00346 * 1 2 3 27 27 H 1.09000 * 109.46780 * 60.00398 * 1 2 3 28 28 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47301 * 54.91491 * 4 2 1 30 30 H 1.09002 * 109.47275 * 294.90668 * 4 2 1 31 31 H 1.08996 * 109.46784 * 60.00232 * 7 5 4 32 32 H 1.08995 * 109.47042 * 180.02562 * 7 5 4 33 33 H 1.08997 * 109.46967 * 299.99913 * 7 5 4 34 34 H 0.96998 * 119.99934 * 26.62135 * 8 5 4 35 35 H 1.08987 * 109.47291 * 64.69278 * 12 11 9 36 36 H 1.08995 * 109.46890 * 184.69548 * 12 11 9 37 37 H 1.09005 * 109.46839 * 304.68991 * 12 11 9 38 38 H 1.09001 * 109.47038 * 60.00344 * 13 11 9 39 39 H 1.09003 * 109.47094 * 179.97438 * 13 11 9 40 40 H 1.08993 * 109.47143 * 299.99996 * 13 11 9 41 41 H 1.08999 * 115.54952 * 34.41287 * 14 11 9 42 42 H 1.09005 * 117.50114 * 359.97438 * 15 14 11 43 43 H 1.08999 * 117.50346 * 145.01768 * 15 14 11 44 44 H 1.08993 * 117.49883 * 214.98126 * 16 14 11 45 45 H 1.09005 * 117.49364 * 359.97438 * 16 14 11 46 46 H 0.96996 * 119.99832 * 93.22386 * 17 2 1 47 47 H 0.97002 * 120.00320 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5647 -0.6114 -1.3148 6 1 3.9957 -0.9754 -0.3821 7 6 3.9621 0.8513 -1.5237 8 7 4.0648 -1.4175 -2.4312 9 6 5.3152 -1.9190 -2.3932 10 8 5.9927 -1.7839 -1.3964 11 6 5.8715 -2.6476 -3.5894 12 6 4.9280 -3.7885 -3.9757 13 6 6.0031 -1.6750 -4.7631 14 6 7.2481 -3.2190 -3.2437 15 6 8.4640 -2.6002 -3.9361 16 6 7.9842 -3.9978 -4.3357 17 7 2.0183 -0.6906 1.1962 18 6 2.1837 0.0009 2.3665 19 1 1.8760 1.0342 2.4312 20 6 2.7466 -0.6260 3.4696 21 7 3.2156 -1.8511 3.3620 22 14 2.8386 0.2689 5.1066 23 1 1.6075 -0.0053 5.8906 24 1 4.0240 -0.2060 5.8645 25 1 2.9574 1.7295 4.8664 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6042 -0.2627 -2.1369 30 1 1.7531 -1.7719 -1.2048 31 1 3.5900 1.4510 -0.6931 32 1 5.0482 0.9295 -1.5708 33 1 3.5312 1.2152 -2.4563 34 1 3.4960 -1.5903 -3.1976 35 1 3.9734 -3.3759 -4.3018 36 1 5.3702 -4.3665 -4.7871 37 1 4.7686 -4.4359 -3.1134 38 1 6.6752 -0.8622 -4.4879 39 1 6.4059 -2.2019 -5.6282 40 1 5.0225 -1.2679 -5.0094 41 1 7.3723 -3.5558 -2.2145 42 1 8.2833 -1.7863 -4.6383 43 1 9.3883 -2.5302 -3.3627 44 1 8.5930 -4.8468 -4.0249 45 1 7.4876 -4.1034 -5.3002 46 1 2.2245 -1.6377 1.1592 47 1 3.6093 -2.2892 4.1328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135252290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:43 Heat of formation + Delta-G solvation = -20.574277 kcal Electronic energy + Delta-G solvation = -23317.459151 eV Core-core repulsion = 20114.732869 eV Total energy + Delta-G solvation = -3202.726283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31349 -37.96771 -36.64301 -34.51022 -33.33699 -32.05158 -29.94884 -28.49228 -27.65508 -26.26016 -24.63245 -23.64548 -22.35287 -22.23940 -20.42924 -19.65305 -18.57366 -17.24604 -16.98283 -16.09741 -15.29390 -15.03895 -14.82487 -14.46486 -14.06712 -13.78368 -13.47808 -13.29389 -12.93069 -12.81821 -12.53454 -12.33611 -12.24607 -12.08416 -11.88327 -11.71558 -11.63547 -11.26685 -11.23063 -10.91831 -10.88432 -10.77857 -10.58639 -10.42959 -10.27790 -10.18768 -10.05907 -9.89847 -9.59754 -9.27525 -8.81322 -8.67813 -6.87889 -5.68383 -2.97441 2.95148 3.36805 3.48638 3.53530 3.55786 3.79960 4.43420 4.63769 4.66066 4.77926 4.93067 4.97589 5.11815 5.26058 5.34244 5.38002 5.43265 5.51630 5.56082 5.62026 5.67224 5.69790 5.75503 5.80316 5.82389 5.89930 6.00095 6.02566 6.06105 6.09458 6.12197 6.23032 6.27652 6.37319 6.46048 6.58335 6.60526 6.80537 6.94013 6.97449 7.11219 7.77605 7.83222 8.49818 8.57702 9.60338 10.18164 10.52901 11.53663 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.004138 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.825037 B = 6765.595860 C = 7565.656195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.053 0.947 4 C -0.128 4.128 5 C 0.140 3.860 6 H 0.110 0.890 7 C -0.156 4.156 8 N -0.725 5.725 9 C 0.520 3.480 10 O -0.526 6.526 11 C -0.052 4.052 12 C -0.139 4.139 13 C -0.141 4.141 14 C -0.127 4.127 15 C -0.181 4.181 16 C -0.180 4.180 17 N -0.722 5.722 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.928 5.928 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.391 0.609 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.382 0.618 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -1.568 -20.632 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.071 0.929 4 C -0.167 4.167 5 C 0.036 3.964 6 H 0.128 0.872 7 C -0.214 4.214 8 N -0.376 5.376 9 C 0.305 3.695 10 O -0.401 6.401 11 C -0.055 4.055 12 C -0.197 4.197 13 C -0.199 4.199 14 C -0.146 4.146 15 C -0.218 4.218 16 C -0.217 4.217 17 N -0.363 5.363 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.734 3.266 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.225 0.775 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.987 -1.315 -19.754 20.195 hybrid contribution -0.201 0.039 0.619 0.652 sum 3.786 -1.276 -19.135 19.548 Atomic orbital electron populations 1.22443 0.99421 1.00722 0.99865 1.20240 0.91676 0.95744 0.86118 0.92924 1.22122 0.93892 1.01529 0.99159 1.21071 0.94195 0.90320 0.90806 0.87243 1.22142 1.01215 0.96624 1.01440 1.46153 1.14720 1.53989 1.22734 1.20336 0.81806 0.78778 0.88568 1.90750 1.58649 1.57725 1.33008 1.20262 0.95074 0.95914 0.94248 1.21846 0.98141 0.97418 1.02256 1.21956 1.02456 0.98801 0.96640 1.22055 0.90595 1.03538 0.98397 1.23117 0.98475 0.96388 1.03807 1.22976 1.04053 0.95269 0.99372 1.42429 1.78509 1.09407 1.05993 1.19192 1.33409 0.95479 0.89002 0.91338 1.24727 1.00954 0.96726 0.98308 1.69686 1.45145 1.13026 1.29739 0.86252 0.77012 0.78776 0.84523 1.21878 1.21885 1.20799 0.92824 0.94607 0.93634 0.92285 0.91807 0.90782 0.93064 0.93553 0.77541 0.92159 0.91512 0.91734 0.91689 0.91560 0.92049 0.86684 0.88364 0.88973 0.88895 0.88918 0.78402 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.51 37.16 0.35 -2.53 16 2 C 0.17 3.33 2.77 -67.93 -0.19 3.14 16 3 H 0.05 1.04 6.30 -51.93 -0.33 0.71 16 4 C -0.13 -2.03 4.42 -26.73 -0.12 -2.14 16 5 C 0.14 2.38 2.66 -67.93 -0.18 2.20 16 6 H 0.11 2.49 6.92 -51.93 -0.36 2.13 16 7 C -0.16 -2.49 9.28 37.16 0.34 -2.14 16 8 N -0.73 -10.15 4.92 -53.80 -0.26 -10.41 16 9 C 0.52 8.14 6.46 -10.99 -0.07 8.07 16 10 O -0.53 -11.03 15.31 5.55 0.08 -10.95 16 11 C -0.05 -0.58 0.75 -155.66 -0.12 -0.70 16 12 C -0.14 -1.30 8.17 37.16 0.30 -0.99 16 13 C -0.14 -1.26 7.03 37.16 0.26 -1.00 16 14 C -0.13 -1.53 4.71 -90.62 -0.43 -1.96 16 15 C -0.18 -1.86 9.57 -26.70 -0.26 -2.12 16 16 C -0.18 -1.64 9.33 -26.69 -0.25 -1.89 16 17 N -0.72 -17.92 4.45 -53.42 -0.24 -18.16 16 18 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.73 13.08 55.49 0.73 -28.00 16 22 Si 0.90 22.90 29.56 -169.99 -5.02 17.87 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.27 6.49 -51.93 -0.34 0.93 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.39 4.17 7.68 -40.82 -0.31 3.85 16 35 H 0.06 0.47 7.36 -51.94 -0.38 0.08 16 36 H 0.07 0.51 7.14 -51.93 -0.37 0.14 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.64 6.97 -51.93 -0.36 0.28 16 39 H 0.07 0.48 7.07 -51.93 -0.37 0.11 16 40 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 41 H 0.12 1.69 7.56 -51.93 -0.39 1.30 16 42 H 0.10 0.91 5.85 -51.93 -0.30 0.61 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.71 7.05 -51.93 -0.37 0.35 16 46 H 0.38 10.28 7.86 -40.82 -0.32 9.96 16 47 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -32.76 368.62 -8.15 -40.91 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.40 Total: 12.48 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.59 Total: -9.29 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.22 Total: -56.58 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.76 -8.15 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135252290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.333 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds