Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21282 * 119.99548 * 0.02562 * 9 8 5 11 11 C 1.50690 * 120.00466 * 180.02562 * 9 8 5 12 12 C 1.53005 * 109.47333 * 300.00789 * 11 9 8 13 13 C 1.53011 * 109.46990 * 60.00598 * 11 9 8 14 14 C 1.53001 * 109.47548 * 180.02562 * 11 9 8 15 15 C 1.53002 * 117.49995 * 248.74944 * 14 11 9 16 16 C 1.53001 * 117.50183 * 180.08720 * 14 11 9 17 17 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 27 27 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 28 28 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 30 30 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 31 31 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 32 32 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 33 33 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 34 34 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 35 35 H 1.08996 * 109.47054 * 59.99897 * 12 11 9 36 36 H 1.09001 * 109.47185 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.46881 * 299.99236 * 12 11 9 38 38 H 1.09000 * 109.46823 * 59.99626 * 13 11 9 39 39 H 1.08996 * 109.47262 * 180.02562 * 13 11 9 40 40 H 1.08998 * 109.46573 * 299.99910 * 13 11 9 41 41 H 1.08999 * 115.54738 * 34.42004 * 14 11 9 42 42 H 1.08998 * 117.50164 * 359.97438 * 15 14 11 43 43 H 1.08998 * 117.49455 * 145.01814 * 15 14 11 44 44 H 1.08993 * 117.50209 * 214.98297 * 16 14 11 45 45 H 1.09003 * 117.49521 * 0.02562 * 16 14 11 46 46 H 0.97000 * 119.99792 * 264.99726 * 17 2 1 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4341 0.5733 11 6 5.5555 2.6563 1.2710 12 6 4.5769 3.5536 0.5107 13 6 5.5195 3.0087 2.7595 14 6 6.9702 2.8716 0.7296 15 6 8.0767 3.1701 1.7432 16 6 7.5572 4.2811 0.8273 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0075 -2.3757 19 1 1.8926 1.0405 -2.4242 20 6 2.6172 -0.6605 -3.5077 21 7 2.9303 -1.9375 -3.4485 22 14 2.8029 0.2732 -5.1149 23 1 3.7570 1.3957 -4.9279 24 1 3.3164 -0.6440 -6.1637 25 1 1.4824 0.8102 -5.5308 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 5.1715 -1.3617 2.5381 32 1 3.6546 -1.0593 3.4193 33 1 3.8002 -2.4819 2.3595 34 1 3.3284 1.4129 1.9028 35 1 3.5689 3.4004 0.8961 36 1 4.8618 4.5972 0.6443 37 1 4.6026 3.3027 -0.5497 38 1 6.2167 2.3694 3.3011 39 1 5.8043 4.0523 2.8928 40 1 4.5115 2.8554 3.1448 41 1 7.2351 2.2756 -0.1438 42 1 7.7968 3.2135 2.7957 43 1 9.0696 2.7707 1.5365 44 1 8.2085 4.6123 0.0185 45 1 6.9356 5.0550 1.2777 46 1 2.2490 -1.6318 -1.1526 47 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135252291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -21.249622 kcal Electronic energy + Delta-G solvation = -23865.353078 eV Core-core repulsion = 20662.597510 eV Total energy + Delta-G solvation = -3202.755568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21488 -37.91375 -36.50741 -34.39022 -33.27243 -31.95283 -30.14623 -28.54625 -27.51353 -26.27331 -24.48205 -23.57156 -22.25120 -22.02771 -20.46485 -19.64813 -18.61695 -17.22577 -16.91609 -16.09499 -15.27003 -14.87776 -14.66158 -14.39561 -13.86123 -13.80191 -13.57139 -13.16497 -12.79877 -12.69981 -12.53685 -12.25088 -12.16059 -12.03583 -11.92203 -11.69502 -11.56398 -11.52325 -11.14643 -10.97536 -10.78188 -10.74735 -10.56667 -10.38048 -10.28917 -10.20231 -9.95640 -9.85654 -9.56919 -9.19958 -8.82738 -8.57923 -6.87160 -5.68242 -2.95889 3.09543 3.47800 3.48778 3.53031 3.53893 3.89882 4.54683 4.66192 4.76388 4.88901 5.03806 5.07477 5.17197 5.21779 5.46314 5.47493 5.53065 5.53681 5.61038 5.65824 5.69461 5.74696 5.80937 5.85611 5.90882 5.94551 5.99936 6.05762 6.10330 6.11347 6.18392 6.28352 6.33646 6.40494 6.41294 6.49377 6.61835 6.79341 6.88770 7.01773 7.11588 7.75868 7.93483 8.50171 8.69966 9.61338 10.19194 10.53368 11.54557 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.005905 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.873778 B = 4740.490211 C = 5825.485597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.715 5.715 9 C 0.526 3.474 10 O -0.531 6.531 11 C -0.051 4.051 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.126 4.126 15 C -0.183 4.183 16 C -0.179 4.179 17 N -0.720 5.720 18 C -0.233 4.233 19 H 0.066 0.934 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.288 1.288 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 10.387 15.577 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.366 5.366 9 C 0.311 3.689 10 O -0.406 6.406 11 C -0.054 4.054 12 C -0.195 4.195 13 C -0.199 4.199 14 C -0.145 4.145 15 C -0.220 4.220 16 C -0.216 4.216 17 N -0.361 5.361 18 C -0.365 4.365 19 H 0.084 0.916 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.854 9.909 15.049 18.426 hybrid contribution -0.203 0.434 -0.814 0.944 sum 3.651 10.343 14.235 17.971 Atomic orbital electron populations 1.22461 0.99632 1.00765 0.99694 1.20215 0.91462 0.95556 0.86571 0.93639 1.22162 0.93902 1.02116 0.98739 1.21004 0.94925 0.80421 0.99736 0.87751 1.22175 1.01455 1.00137 0.98064 1.45942 1.16484 1.11367 1.62822 1.20223 0.81769 0.89389 0.77475 1.90699 1.51122 1.56359 1.42454 1.20241 0.95328 0.93119 0.96727 1.21819 0.97639 0.98755 1.01294 1.21970 1.02233 1.01970 0.93689 1.22075 0.91834 0.98671 1.01870 1.23111 0.98726 1.03241 0.96904 1.22963 1.03933 0.91932 1.02795 1.42380 1.77968 1.10538 1.05236 1.19097 1.36312 0.93636 0.87414 0.91611 1.24685 1.02218 0.95941 0.97927 1.69635 1.50843 1.08643 1.28898 0.86347 0.77636 0.78745 0.83954 1.21374 1.21750 1.21447 0.94781 0.92943 0.93569 0.92195 0.90745 0.92611 0.93267 0.91874 0.77480 0.92115 0.91779 0.91364 0.91836 0.91618 0.92145 0.86563 0.88444 0.89111 0.88933 0.88923 0.78366 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.27 2.84 -67.93 -0.19 3.07 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 6 H 0.10 2.28 7.06 -51.93 -0.37 1.91 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 8 N -0.72 -10.58 4.23 -53.81 -0.23 -10.81 16 9 C 0.53 8.79 6.44 -10.99 -0.07 8.72 16 10 O -0.53 -11.40 15.31 5.56 0.09 -11.31 16 11 C -0.05 -0.65 0.72 -155.66 -0.11 -0.76 16 12 C -0.14 -1.66 8.21 37.16 0.31 -1.35 16 13 C -0.14 -1.36 6.97 37.16 0.26 -1.10 16 14 C -0.13 -1.68 4.75 -90.62 -0.43 -2.11 16 15 C -0.18 -2.00 9.57 -26.69 -0.26 -2.26 16 16 C -0.18 -1.86 9.39 -26.69 -0.25 -2.11 16 17 N -0.72 -17.75 4.49 -53.42 -0.24 -17.99 16 18 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 22 Si 0.90 23.07 29.55 -169.99 -5.02 18.04 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.39 4.67 7.44 -40.82 -0.30 4.37 16 35 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 36 H 0.06 0.63 7.29 -51.93 -0.38 0.26 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.64 6.97 -51.93 -0.36 0.27 16 39 H 0.06 0.53 7.07 -51.93 -0.37 0.17 16 40 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 41 H 0.12 1.90 7.47 -51.93 -0.39 1.51 16 42 H 0.10 0.95 5.85 -51.93 -0.30 0.64 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.84 7.07 -51.93 -0.37 0.47 16 46 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 47 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -32.69 370.49 -8.20 -40.89 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -8.53 Total: 13.00 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.57 Total: -9.38 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.26 Total: -56.82 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.69 -8.20 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135252291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.643 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds