Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46962 * 2 1 4 4 C 1.52999 * 109.46976 * 240.00575 * 2 1 3 5 5 C 1.52997 * 109.47314 * 65.91313 * 4 2 1 6 6 H 1.09004 * 109.47285 * 304.41825 * 5 4 2 7 7 C 1.53000 * 109.47082 * 184.42046 * 5 4 2 8 8 N 1.46494 * 109.47310 * 64.41916 * 5 4 2 9 9 C 1.36939 * 120.00639 * 204.17577 * 8 5 4 10 10 H 1.07998 * 119.99377 * 5.25689 * 9 8 5 11 11 C 1.38812 * 120.00364 * 185.26452 * 9 8 5 12 12 N 1.31617 * 119.99760 * 5.35668 * 11 9 8 13 13 Si 1.86802 * 119.99762 * 185.35760 * 11 9 8 14 14 H 1.48494 * 109.47253 * 59.99560 * 13 11 9 15 15 H 1.48504 * 109.46711 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47100 * 299.99766 * 13 11 9 17 17 N 1.46491 * 109.47401 * 120.00212 * 2 1 3 18 18 C 1.34777 * 120.00269 * 275.73220 * 17 2 1 19 19 O 1.21283 * 119.99608 * 5.04657 * 18 17 2 20 20 C 1.50693 * 120.00505 * 185.04539 * 18 17 2 21 21 C 1.53001 * 109.47162 * 295.75319 * 20 18 17 22 22 C 1.53004 * 109.47130 * 55.75019 * 20 18 17 23 23 C 1.53003 * 109.47741 * 175.75218 * 20 18 17 24 24 C 1.52997 * 117.49847 * 248.74884 * 23 20 18 25 25 C 1.52993 * 117.49849 * 180.08646 * 23 20 18 26 26 H 1.08998 * 109.47399 * 59.99482 * 1 2 3 27 27 H 1.09001 * 109.46876 * 299.99688 * 1 2 3 28 28 H 1.08993 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47366 * 185.91601 * 4 2 1 30 30 H 1.09004 * 109.46749 * 305.91333 * 4 2 1 31 31 H 1.09000 * 109.47236 * 299.99712 * 7 5 4 32 32 H 1.08993 * 109.47550 * 60.00050 * 7 5 4 33 33 H 1.08998 * 109.47151 * 180.02562 * 7 5 4 34 34 H 0.97005 * 120.00198 * 24.17249 * 8 5 4 35 35 H 0.97003 * 119.99210 * 180.02562 * 12 11 9 36 36 H 0.96999 * 120.00137 * 95.73260 * 17 2 1 37 37 H 1.08998 * 109.47063 * 59.99859 * 21 20 18 38 38 H 1.09002 * 109.47237 * 179.97438 * 21 20 18 39 39 H 1.09004 * 109.47271 * 300.00023 * 21 20 18 40 40 H 1.09000 * 109.46960 * 57.42918 * 22 20 18 41 41 H 1.09004 * 109.47159 * 177.42570 * 22 20 18 42 42 H 1.09007 * 109.47038 * 297.42783 * 22 20 18 43 43 H 1.08997 * 115.54192 * 34.41490 * 23 20 18 44 44 H 1.09000 * 117.50029 * 359.97438 * 24 23 20 45 45 H 1.08997 * 117.49545 * 145.01692 * 24 23 20 46 46 H 1.09008 * 117.49656 * 214.97535 * 25 23 20 47 47 H 1.08992 * 117.50423 * 0.02562 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6550 0.0809 -2.4940 6 1 0.5768 0.2408 -2.5041 7 6 2.0674 -0.6936 -3.7475 8 7 2.3404 1.3754 -2.4723 9 6 1.8188 2.4382 -3.1604 10 1 0.8598 2.3469 -3.6488 11 6 2.5225 3.6326 -3.2304 12 7 3.7359 3.7120 -2.7268 13 14 1.7473 5.1273 -4.0395 14 1 0.4991 5.4878 -3.3204 15 1 2.6972 6.2675 -3.9859 16 1 1.4297 4.8145 -5.4560 17 7 2.0184 -0.6906 1.1960 18 6 2.1332 -0.0220 2.3607 19 8 1.7468 1.1247 2.4421 20 6 2.7415 -0.6992 3.5616 21 6 1.8562 -1.8716 3.9889 22 6 4.1358 -1.2173 3.2031 23 6 2.8503 0.3035 4.7121 24 6 4.2528 0.7493 5.1305 25 6 3.4493 -0.1944 6.0289 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1248 -0.8138 -1.1980 30 1 1.5927 -1.7137 -1.3039 31 1 3.1455 -0.8535 -3.7375 32 1 1.5574 -1.6567 -3.7638 33 1 1.7935 -0.1220 -4.6342 34 1 3.1639 1.4798 -1.9703 35 1 4.2274 4.5468 -2.7754 36 1 2.2592 -1.6291 1.1499 37 1 1.7788 -2.5860 3.1693 38 1 2.2965 -2.3617 4.8573 39 1 0.8628 -1.5026 4.2443 40 1 4.7529 -0.3888 2.8551 41 1 4.5941 -1.6666 4.0842 42 1 4.0538 -1.9655 2.4146 43 1 2.0495 1.0407 4.7703 44 1 5.0981 0.3279 4.5864 45 1 4.3747 1.7797 5.4644 46 1 3.0430 0.2156 6.9535 47 1 3.7664 -1.2362 6.0755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135252292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -21.215798 kcal Electronic energy + Delta-G solvation = -23302.428013 eV Core-core repulsion = 20099.673911 eV Total energy + Delta-G solvation = -3202.754101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34969 -37.99490 -36.67482 -34.53487 -33.35805 -32.06330 -29.97391 -28.50241 -27.64574 -26.27141 -24.65130 -23.66264 -22.35350 -22.25779 -20.48267 -19.66243 -18.58209 -17.26564 -17.02376 -16.13808 -15.31403 -14.96459 -14.71844 -14.60838 -14.05842 -13.97700 -13.51671 -13.23788 -12.96096 -12.81525 -12.61429 -12.32775 -12.24491 -12.04038 -11.90267 -11.68881 -11.65885 -11.25180 -11.22380 -10.91449 -10.90688 -10.80458 -10.59068 -10.42653 -10.34008 -10.19957 -10.08070 -9.93417 -9.57856 -9.30226 -8.83107 -8.73785 -6.89448 -5.69959 -2.98466 2.89985 3.33794 3.48767 3.53697 3.54298 3.78602 4.41598 4.62256 4.65403 4.77082 4.92065 4.97526 5.12688 5.22721 5.31522 5.36794 5.40843 5.50975 5.55764 5.60682 5.65401 5.68683 5.74453 5.80289 5.81777 5.88680 5.99100 6.03424 6.04185 6.07576 6.11574 6.23163 6.26326 6.35167 6.46972 6.56902 6.59113 6.76773 6.90423 6.95976 7.12906 7.76219 7.78590 8.48811 8.51909 9.59276 10.16897 10.51626 11.52401 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.004181 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.709904 B = 6695.785872 C = 7482.397950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.103 0.897 4 C -0.128 4.128 5 C 0.174 3.826 6 H 0.051 0.949 7 C -0.164 4.164 8 N -0.722 5.722 9 C -0.238 4.238 10 H 0.068 0.932 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.904 3.096 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.287 1.287 17 N -0.725 5.725 18 C 0.522 3.478 19 O -0.530 6.530 20 C -0.052 4.052 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.181 4.181 25 C -0.180 4.180 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.382 0.618 35 H 0.255 0.745 36 H 0.392 0.608 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 -15.273 14.198 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.121 0.879 4 C -0.167 4.167 5 C 0.063 3.937 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.364 5.364 9 C -0.370 4.370 10 H 0.086 0.914 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.735 3.265 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.214 1.214 17 N -0.375 5.375 18 C 0.307 3.693 19 O -0.406 6.406 20 C -0.055 4.055 21 C -0.193 4.193 22 C -0.202 4.202 23 C -0.148 4.148 24 C -0.218 4.218 25 C -0.217 4.217 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.216 0.784 35 H 0.064 0.936 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.645 -14.289 14.133 20.165 hybrid contribution 0.076 0.463 -0.429 0.636 sum -1.569 -13.826 13.704 19.529 Atomic orbital electron populations 1.22140 0.95783 1.00840 1.02760 1.21047 0.93878 0.98665 0.82469 0.87874 1.22104 1.01140 0.98531 0.94899 1.20233 0.96421 0.86438 0.90584 0.93146 1.22436 1.00611 0.98422 1.00945 1.42435 1.28926 1.05314 1.59694 1.19156 1.01299 0.90640 1.25879 0.91363 1.24716 0.96200 0.98238 1.01575 1.69670 1.10876 1.26115 1.51238 0.86324 0.78215 0.82974 0.79016 1.21281 1.21776 1.21370 1.46167 1.67530 1.13901 1.09946 1.20328 0.78382 0.86598 0.83985 1.90719 1.48275 1.17779 1.83786 1.20255 0.96712 0.95598 0.92942 1.21807 0.99610 0.96186 1.01718 1.21994 0.94871 1.01471 1.01835 1.22061 0.98178 1.00829 0.93718 1.23135 0.95133 0.99954 1.03533 1.22970 1.04844 0.99565 0.94284 0.90866 0.92756 0.93532 0.91712 0.92108 0.93598 0.94719 0.92745 0.78401 0.93565 0.77452 0.92192 0.91505 0.91990 0.91424 0.91543 0.92011 0.86646 0.88208 0.88899 0.88949 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.25 37.16 0.34 -2.13 16 2 C 0.14 2.37 2.55 -67.93 -0.17 2.19 16 3 H 0.10 2.24 7.11 -51.93 -0.37 1.87 16 4 C -0.13 -1.99 4.39 -26.73 -0.12 -2.11 16 5 C 0.17 3.34 2.76 -67.94 -0.19 3.15 16 6 H 0.05 0.99 6.35 -51.93 -0.33 0.66 16 7 C -0.16 -2.93 9.48 37.16 0.35 -2.58 16 8 N -0.72 -17.87 4.45 -53.43 -0.24 -18.11 16 9 C -0.24 -6.63 9.92 -15.06 -0.15 -6.78 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -28.60 13.08 55.49 0.73 -27.88 16 13 Si 0.90 22.87 29.56 -169.99 -5.02 17.84 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 N -0.72 -9.85 4.87 -53.81 -0.26 -10.11 16 18 C 0.52 7.91 6.43 -10.99 -0.07 7.84 16 19 O -0.53 -10.63 15.23 5.56 0.08 -10.54 16 20 C -0.05 -0.57 0.73 -155.66 -0.11 -0.69 16 21 C -0.14 -1.17 8.24 37.16 0.31 -0.86 16 22 C -0.14 -1.36 6.90 37.16 0.26 -1.10 16 23 C -0.13 -1.52 4.79 -90.62 -0.43 -1.95 16 24 C -0.18 -1.92 9.57 -26.69 -0.26 -2.17 16 25 C -0.18 -1.61 9.37 -26.70 -0.25 -1.86 16 26 H 0.07 1.23 6.50 -51.93 -0.34 0.90 16 27 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.38 10.22 7.82 -40.82 -0.32 9.90 16 35 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.39 4.05 7.51 -40.82 -0.31 3.75 16 37 H 0.06 0.44 7.72 -51.93 -0.40 0.04 16 38 H 0.07 0.47 7.29 -51.93 -0.38 0.09 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.74 7.15 -51.93 -0.37 0.37 16 41 H 0.07 0.51 6.88 -51.93 -0.36 0.15 16 42 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 43 H 0.12 1.61 7.41 -51.93 -0.39 1.23 16 44 H 0.10 1.00 5.87 -51.93 -0.30 0.69 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 47 H 0.09 0.70 7.06 -51.93 -0.37 0.34 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -32.45 368.03 -8.14 -40.59 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -8.38 Total: 12.11 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.59 Total: -9.46 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.23 Total: -56.09 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.45 -8.14 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135252292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.378 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds