Wall clock time and date at job start Tue Mar 31 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46994 * 2 1 4 4 C 1.53005 * 109.46903 * 239.99662 * 2 1 3 5 5 C 1.50698 * 115.55095 * 36.90600 * 4 2 1 6 6 O 1.21274 * 120.00007 * 239.09235 * 5 4 2 7 7 N 1.34779 * 120.00049 * 59.09340 * 5 4 2 8 8 C 1.46499 * 120.00036 * 184.79602 * 7 5 4 9 9 H 1.08999 * 109.47123 * 324.97749 * 8 7 5 10 10 C 1.53000 * 109.47307 * 84.97881 * 8 7 5 11 11 C 1.53002 * 109.46986 * 204.97899 * 8 7 5 12 12 C 1.52995 * 109.47269 * 67.03549 * 11 8 7 13 13 H 1.09008 * 109.47050 * 53.99798 * 12 11 8 14 14 C 1.53001 * 109.47057 * 173.99627 * 12 11 8 15 15 N 1.46499 * 109.47329 * 293.99897 * 12 11 8 16 16 C 1.36937 * 120.00002 * 156.55837 * 15 12 11 17 17 H 1.07999 * 120.00079 * 355.75113 * 16 15 12 18 18 C 1.38816 * 119.99971 * 175.75740 * 16 15 12 19 19 N 1.31616 * 119.99819 * 1.13138 * 18 16 15 20 20 Si 1.86800 * 119.99756 * 181.13518 * 18 16 15 21 21 H 1.48493 * 109.47383 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47125 * 119.99728 * 20 18 16 23 23 H 1.48497 * 109.46880 * 239.99568 * 20 18 16 24 24 C 1.52998 * 117.49900 * 251.19185 * 4 2 1 25 25 C 1.52996 * 60.00198 * 252.51483 * 24 4 2 26 26 H 1.09005 * 109.46889 * 174.46566 * 1 2 3 27 27 H 1.09002 * 109.46941 * 54.46748 * 1 2 3 28 28 H 1.08998 * 109.47067 * 294.46739 * 1 2 3 29 29 H 1.08996 * 109.46779 * 119.99727 * 2 1 3 30 30 H 1.08994 * 109.47762 * 66.88139 * 3 2 1 31 31 H 1.09001 * 109.47293 * 186.88984 * 3 2 1 32 32 H 1.09008 * 109.47321 * 306.88201 * 3 2 1 33 33 H 0.97000 * 120.00175 * 4.78780 * 7 5 4 34 34 H 1.08997 * 109.47085 * 179.97438 * 10 8 7 35 35 H 1.09004 * 109.46907 * 299.99678 * 10 8 7 36 36 H 1.08999 * 109.47137 * 59.99876 * 10 8 7 37 37 H 1.08998 * 109.47160 * 187.03935 * 11 8 7 38 38 H 1.08995 * 109.47126 * 307.03616 * 11 8 7 39 39 H 1.09003 * 109.47101 * 300.00106 * 14 12 11 40 40 H 1.08996 * 109.47430 * 60.00129 * 14 12 11 41 41 H 1.09006 * 109.47224 * 180.02562 * 14 12 11 42 42 H 0.97002 * 119.99819 * 336.55330 * 15 12 11 43 43 H 0.97000 * 119.99706 * 175.21999 * 19 18 16 44 44 H 1.09002 * 117.50011 * 0.02562 * 24 4 2 45 45 H 1.08994 * 117.49506 * 145.02086 * 24 4 2 46 46 H 1.08999 * 117.50080 * 252.51211 * 25 24 4 47 47 H 1.09001 * 117.51629 * 107.47807 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.2316 -0.5019 -2.5020 6 8 0.7338 -1.4473 -3.0758 7 7 1.0619 0.7449 -2.9848 8 6 0.1907 0.9705 -4.1407 9 1 0.2676 0.1249 -4.8242 10 6 -1.2573 1.1140 -3.6678 11 6 0.6209 2.2497 -4.8616 12 6 2.0023 2.0432 -5.4860 13 1 1.9861 1.1557 -6.1188 14 6 2.3679 3.2653 -6.3310 15 7 2.9968 1.8681 -4.4247 16 6 4.1691 1.2106 -4.6865 17 1 4.3316 0.7614 -5.6551 18 6 5.1485 1.1212 -3.7069 19 7 4.9414 1.6492 -2.5192 20 14 6.7605 0.2518 -4.0744 21 1 6.7442 -0.2513 -5.4714 22 1 7.8869 1.2044 -3.9040 23 1 6.9316 -0.8894 -3.1397 24 6 2.6880 -2.0940 -1.0574 25 6 3.5537 -0.8812 -1.4042 26 1 -0.3633 -1.0229 -0.0991 27 1 -0.3633 0.5973 -0.8363 28 1 -0.3633 0.4256 0.9354 29 1 1.8933 -0.5138 0.8900 30 1 1.7807 1.9196 0.9450 31 1 3.1230 1.4450 -0.1233 32 1 1.5796 1.9906 -0.8220 33 1 1.5165 1.4929 -2.5668 34 1 -1.9054 1.2824 -4.5279 35 1 -1.5638 0.2027 -3.1543 36 1 -1.3342 1.9596 -2.9844 37 1 -0.1000 2.4857 -5.6443 38 1 0.6642 3.0721 -4.1476 39 1 1.6279 3.3955 -7.1207 40 1 2.3841 4.1527 -5.6984 41 1 3.3519 3.1180 -6.7762 42 1 2.8249 2.2181 -3.5364 43 1 5.5956 1.5272 -1.8135 44 1 2.7506 -2.4834 -0.0412 45 1 2.5294 -2.8387 -1.8372 46 1 3.9648 -0.8280 -2.4123 47 1 4.1862 -0.4721 -0.6163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135434811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:24 Heat of formation + Delta-G solvation = -17.403676 kcal Electronic energy + Delta-G solvation = -25063.353227 eV Core-core repulsion = 21860.764431 eV Total energy + Delta-G solvation = -3202.588795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81637 -37.36184 -36.14989 -34.21356 -32.81948 -32.13638 -30.42590 -28.48277 -26.86132 -26.28574 -23.94921 -23.61247 -21.87145 -21.40201 -20.16549 -20.09913 -18.60727 -17.13858 -15.95181 -15.74529 -15.11377 -14.72631 -14.37339 -13.91239 -13.68759 -13.65229 -13.28374 -12.88033 -12.78304 -12.62072 -12.50699 -12.11453 -11.94113 -11.81016 -11.71359 -11.60316 -11.19556 -10.96474 -10.89579 -10.77397 -10.70656 -10.65704 -10.53108 -10.33600 -10.19751 -9.84937 -9.69156 -9.63425 -9.35494 -8.93998 -8.86113 -8.24368 -6.88422 -5.73755 -3.00595 3.40557 3.42303 3.50430 3.51916 3.83655 4.46833 4.60702 5.02563 5.12071 5.24657 5.40984 5.42285 5.47273 5.56269 5.59800 5.66906 5.71925 5.78815 5.89040 5.94001 5.97132 6.00675 6.04523 6.15856 6.17480 6.22085 6.25408 6.27977 6.32049 6.39798 6.45546 6.52830 6.58905 6.64648 6.70101 6.77506 6.87141 6.89936 7.07483 7.10073 7.29469 7.75086 8.33084 8.43710 9.04786 9.55017 10.09727 10.46406 11.46409 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.009561 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.049059 B = 2927.992609 C = 4324.649224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.145 4.145 4 C -0.150 4.150 5 C 0.571 3.429 6 O -0.565 6.565 7 N -0.695 5.695 8 C 0.146 3.854 9 H 0.082 0.918 10 C -0.162 4.162 11 C -0.133 4.133 12 C 0.169 3.831 13 H 0.045 0.955 14 C -0.163 4.163 15 N -0.715 5.715 16 C -0.228 4.228 17 H 0.065 0.935 18 C -0.005 4.005 19 N -0.921 5.921 20 Si 0.889 3.111 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.291 1.291 24 C -0.170 4.170 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.404 0.596 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 0.706 3.587 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.153 4.153 5 C 0.358 3.642 6 O -0.445 6.445 7 N -0.348 5.348 8 C 0.041 3.959 9 H 0.100 0.900 10 C -0.220 4.220 11 C -0.171 4.171 12 C 0.060 3.940 13 H 0.063 0.937 14 C -0.223 4.223 15 N -0.358 5.358 16 C -0.360 4.360 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.570 5.570 20 Si 0.722 3.278 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.218 1.218 24 C -0.208 4.208 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.213 0.787 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.133 0.867 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.339 0.032 3.082 9.835 hybrid contribution 1.186 0.049 0.240 1.211 sum -8.153 0.081 3.322 8.804 Atomic orbital electron populations 1.21911 0.95545 1.01779 1.01468 1.20558 0.95064 0.96361 0.94740 1.21886 1.03464 0.94503 1.00361 1.21351 0.97513 1.01694 0.94738 1.19230 0.78507 0.82567 0.83888 1.90587 1.51176 1.41920 1.60809 1.46020 1.47814 1.09324 1.31596 1.20808 0.88390 0.98415 0.88269 0.89980 1.22220 0.96794 1.01710 1.01311 1.22187 0.98459 0.96615 0.99858 1.20273 0.87581 0.95352 0.90824 0.93687 1.22415 1.00597 1.00067 0.99196 1.42409 1.17134 1.67677 1.08563 1.19205 0.92163 1.26214 0.98371 0.91739 1.24507 0.97402 1.01637 0.96537 1.69624 1.36242 1.49124 1.02015 0.86391 0.85049 0.79005 0.77402 1.21021 1.22206 1.21829 1.23063 1.04530 0.91099 1.02096 1.23009 0.89714 0.97450 1.04877 0.92836 0.92380 0.92935 0.91121 0.93544 0.90264 0.93025 0.75653 0.92199 0.92555 0.92865 0.90943 0.91864 0.94739 0.93653 0.92892 0.78686 0.93814 0.89236 0.88721 0.86696 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.48 37.16 0.31 -1.77 16 2 C -0.05 -0.73 2.94 -90.62 -0.27 -0.99 16 3 C -0.14 -2.18 8.90 37.15 0.33 -1.85 16 4 C -0.15 -2.68 1.68 -155.66 -0.26 -2.94 16 5 C 0.57 11.34 5.64 -10.99 -0.06 11.27 16 6 O -0.57 -12.89 16.18 5.56 0.09 -12.80 16 7 N -0.69 -12.47 3.39 -53.81 -0.18 -12.65 16 8 C 0.15 2.40 2.60 -67.93 -0.18 2.22 16 9 H 0.08 1.55 7.50 -51.93 -0.39 1.16 16 10 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 11 C -0.13 -2.02 4.39 -26.73 -0.12 -2.14 16 12 C 0.17 3.18 2.88 -67.93 -0.20 2.98 16 13 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 14 C -0.16 -2.82 9.47 37.16 0.35 -2.47 16 15 N -0.71 -15.90 3.98 -53.42 -0.21 -16.11 16 16 C -0.23 -5.81 9.92 -15.06 -0.15 -5.95 16 17 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 18 C 0.00 -0.13 4.35 -17.43 -0.08 -0.20 16 19 N -0.92 -23.30 12.18 55.49 0.68 -22.62 16 20 Si 0.89 21.29 29.56 -169.99 -5.02 16.27 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.17 -2.97 9.69 -26.73 -0.26 -3.23 16 25 C -0.11 -2.20 8.64 -26.73 -0.23 -2.43 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.84 7.11 -51.93 -0.37 0.47 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.37 7.25 -51.93 -0.38 0.99 16 32 H 0.05 0.80 6.09 -51.92 -0.32 0.48 16 33 H 0.40 7.38 4.34 -40.82 -0.18 7.20 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.38 8.62 5.76 -40.82 -0.24 8.39 16 43 H 0.25 6.35 8.32 -40.82 -0.34 6.01 16 44 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 45 H 0.09 1.77 7.89 -51.93 -0.41 1.36 16 46 H 0.11 2.67 6.80 -51.93 -0.35 2.32 16 47 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -26.90 365.92 -8.06 -34.96 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -8.47 Total: 16.82 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.44 Total: -9.37 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.28 Total: -51.38 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.90 -8.06 -34.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135434811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.553 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds