Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 C 1.53000 * 109.47472 * 239.99722 * 2 1 3 5 5 C 1.50706 * 115.54949 * 295.16033 * 4 2 1 6 6 O 1.21279 * 120.00031 * 114.47103 * 5 4 2 7 7 N 1.34780 * 119.99769 * 294.46672 * 5 4 2 8 8 C 1.46497 * 119.99570 * 174.88117 * 7 5 4 9 9 H 1.09000 * 109.47457 * 35.00600 * 8 7 5 10 10 C 1.52994 * 109.47506 * 275.00303 * 8 7 5 11 11 C 1.53005 * 109.46772 * 155.00001 * 8 7 5 12 12 C 1.52994 * 109.47214 * 295.00199 * 11 8 7 13 13 H 1.08997 * 109.47153 * 54.99933 * 12 11 8 14 14 C 1.53003 * 109.47119 * 175.00023 * 12 11 8 15 15 N 1.46498 * 109.47434 * 294.99551 * 12 11 8 16 16 C 1.36938 * 119.99763 * 154.99818 * 15 12 11 17 17 H 1.07996 * 120.00290 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99363 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99687 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00300 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47338 * 89.99989 * 20 18 16 22 22 H 1.48506 * 109.47299 * 209.99715 * 20 18 16 23 23 H 1.48500 * 109.47334 * 329.99693 * 20 18 16 24 24 C 1.52997 * 117.50232 * 149.48716 * 4 2 1 25 25 C 1.52996 * 117.49712 * 80.82807 * 4 2 1 26 26 H 1.09000 * 109.46995 * 179.71477 * 1 2 3 27 27 H 1.09001 * 109.46785 * 59.71774 * 1 2 3 28 28 H 1.08999 * 109.47350 * 299.71942 * 1 2 3 29 29 H 1.09004 * 109.47206 * 119.99818 * 2 1 3 30 30 H 1.08996 * 109.47108 * 59.99723 * 3 2 1 31 31 H 1.09004 * 109.47039 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47048 * 299.99441 * 3 2 1 33 33 H 0.96998 * 120.00104 * 354.88778 * 7 5 4 34 34 H 1.09007 * 109.47556 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.47146 * 299.99818 * 10 8 7 36 36 H 1.08997 * 109.47656 * 60.00065 * 10 8 7 37 37 H 1.09005 * 109.46701 * 55.00492 * 11 8 7 38 38 H 1.09002 * 109.46828 * 175.00166 * 11 8 7 39 39 H 1.08997 * 109.47433 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.46682 * 300.00250 * 14 12 11 41 41 H 1.08997 * 109.47181 * 59.99927 * 14 12 11 42 42 H 0.97000 * 120.00234 * 335.00927 * 15 12 11 43 43 H 0.97000 * 119.99992 * 179.97438 * 19 18 16 44 44 H 1.09004 * 117.49881 * 0.02562 * 24 4 2 45 45 H 1.09002 * 117.50284 * 145.01621 * 24 4 2 46 46 H 1.09003 * 117.49638 * 214.97995 * 25 4 2 47 47 H 1.08998 * 117.50020 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.7118 -2.1899 -1.3314 6 8 0.9700 -2.5977 -2.1999 7 7 2.2426 -3.0499 -0.4397 8 6 1.8370 -4.4576 -0.4491 9 1 1.6546 -4.7764 -1.4753 10 6 0.5571 -4.6252 0.3721 11 6 2.9497 -5.3129 0.1604 12 6 4.1920 -5.2436 -0.7299 13 1 4.4759 -4.2016 -0.8770 14 6 5.3429 -5.9960 -0.0590 15 7 3.8980 -5.8575 -2.0272 16 6 4.6116 -5.4891 -3.1364 17 1 5.3913 -4.7464 -3.0548 18 6 4.3325 -6.0704 -4.3657 19 7 5.0181 -5.7160 -5.4320 20 14 2.9834 -7.3545 -4.5070 21 1 1.6928 -6.6853 -4.8101 22 1 3.3166 -8.3046 -5.5986 23 1 2.8681 -8.0946 -3.2247 24 6 3.3779 -0.2628 -1.8330 25 6 2.0716 0.0699 -2.5583 26 1 -0.3633 -1.0277 -0.0051 27 1 -0.3633 0.5182 -0.8875 28 1 -0.3634 0.5095 0.8925 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 2.8930 -2.7369 0.2082 34 1 0.2556 -5.6727 0.3656 35 1 0.7395 -4.3065 1.3984 36 1 -0.2356 -4.0159 -0.0620 37 1 3.1935 -4.9374 1.1543 38 1 2.6134 -6.3471 0.2351 39 1 6.2281 -5.9463 -0.6930 40 1 5.5617 -5.5393 0.9063 41 1 5.0590 -7.0380 0.0881 42 1 3.1978 -6.5247 -2.1005 43 1 4.8234 -6.1225 -6.2909 44 1 3.8949 0.5525 -1.3269 45 1 4.0205 -1.0232 -2.2768 46 1 1.8553 -0.4719 -3.4791 47 1 1.7286 1.1041 -2.5298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135434814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -19.392303 kcal Electronic energy + Delta-G solvation = -23850.285754 eV Core-core repulsion = 20647.610726 eV Total energy + Delta-G solvation = -3202.675028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21834 -37.93884 -36.57433 -34.51132 -32.93813 -32.09562 -30.72610 -29.19529 -27.44899 -26.40424 -24.78983 -23.26734 -22.35955 -21.74343 -20.62925 -19.78691 -18.92881 -17.57445 -16.95203 -15.96865 -15.56226 -14.79526 -14.75516 -14.39460 -14.21246 -13.64457 -13.57705 -13.14280 -12.97588 -12.84439 -12.62141 -12.38211 -12.22258 -12.11607 -11.96701 -11.92567 -11.67974 -11.48423 -11.19328 -11.18226 -11.04335 -10.87680 -10.63166 -10.47229 -10.30169 -10.25513 -9.92379 -9.88735 -9.52023 -9.33580 -8.86127 -8.67560 -7.19469 -5.70091 -3.04469 2.94875 3.39734 3.43221 3.47499 3.52410 3.80385 4.55267 4.66764 4.72597 4.85904 4.87708 5.03729 5.07399 5.19563 5.27824 5.31936 5.44859 5.49707 5.56069 5.61122 5.62709 5.71125 5.77169 5.79536 5.84103 5.85991 5.88930 5.91147 6.03462 6.12029 6.17428 6.19052 6.21686 6.26790 6.28200 6.35088 6.45306 6.58535 6.79411 6.90405 7.01339 7.86195 8.05062 8.48835 8.62832 9.27578 10.00757 10.19951 11.48620 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.005452 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.798567 B = 5134.940290 C = 5606.815714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.153 4.153 4 C -0.155 4.155 5 C 0.554 3.446 6 O -0.531 6.531 7 N -0.713 5.713 8 C 0.142 3.858 9 H 0.099 0.901 10 C -0.161 4.161 11 C -0.134 4.134 12 C 0.177 3.823 13 H 0.055 0.945 14 C -0.165 4.165 15 N -0.745 5.745 16 C -0.237 4.237 17 H 0.087 0.913 18 C 0.006 3.994 19 N -0.936 5.936 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.162 4.162 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.359 0.641 43 H 0.258 0.742 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 11.454 16.127 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.210 4.210 4 C -0.158 4.158 5 C 0.339 3.661 6 O -0.407 6.407 7 N -0.363 5.363 8 C 0.037 3.963 9 H 0.117 0.883 10 C -0.220 4.220 11 C -0.173 4.173 12 C 0.068 3.932 13 H 0.073 0.927 14 C -0.226 4.226 15 N -0.388 5.388 16 C -0.366 4.366 17 H 0.105 0.895 18 C -0.190 4.190 19 N -0.584 5.584 20 Si 0.711 3.289 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.204 1.204 24 C -0.199 4.199 25 C -0.183 4.183 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.192 0.808 43 H 0.068 0.932 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.952 11.251 15.332 20.248 hybrid contribution -0.546 -0.946 0.060 1.095 sum -7.498 10.304 15.391 19.982 Atomic orbital electron populations 1.21788 0.94678 1.02110 1.01617 1.20483 0.95908 0.95497 0.94870 1.22003 1.01403 0.95530 1.02022 1.21521 1.04135 0.92838 0.97354 1.19366 0.79902 0.86179 0.80645 1.90709 1.36853 1.78693 1.34430 1.45861 1.45333 1.09179 1.35966 1.20986 0.93101 0.80284 1.01906 0.88309 1.22196 0.98121 1.01906 0.99738 1.22209 0.96226 0.99968 0.98871 1.20185 0.91276 0.96422 0.85350 0.92739 1.22425 1.00962 1.00303 0.98861 1.42769 1.43013 1.48550 1.04478 1.18994 1.13262 1.19015 0.85372 0.89492 1.24625 0.99031 0.99802 0.95530 1.69697 1.43161 1.46340 0.99172 0.86604 0.83116 0.82202 0.76964 1.20953 1.21899 1.20423 1.23229 0.90200 1.03566 1.02894 1.23009 1.00153 1.00136 0.95028 0.92673 0.92349 0.92685 0.90723 0.92453 0.92002 0.92143 0.77118 0.91897 0.92896 0.92589 0.91588 0.90844 0.92454 0.94396 0.93677 0.80801 0.93205 0.87774 0.87853 0.87842 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.06 37.16 0.34 -1.14 16 2 C -0.05 -0.48 3.01 -90.62 -0.27 -0.76 16 3 C -0.15 -1.22 8.24 37.16 0.31 -0.91 16 4 C -0.16 -2.00 1.90 -155.66 -0.30 -2.30 16 5 C 0.55 9.22 6.41 -10.98 -0.07 9.15 16 6 O -0.53 -11.41 16.33 5.56 0.09 -11.31 16 7 N -0.71 -10.34 4.45 -53.81 -0.24 -10.58 16 8 C 0.14 2.21 2.56 -67.93 -0.17 2.04 16 9 H 0.10 2.01 6.99 -51.93 -0.36 1.65 16 10 C -0.16 -2.10 9.48 37.15 0.35 -1.75 16 11 C -0.13 -1.94 4.29 -26.73 -0.11 -2.05 16 12 C 0.18 3.25 2.84 -67.93 -0.19 3.05 16 13 H 0.05 1.04 7.56 -51.93 -0.39 0.65 16 14 C -0.17 -2.80 9.49 37.16 0.35 -2.45 16 15 N -0.74 -17.49 4.30 -53.43 -0.23 -17.72 16 16 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.94 -30.08 13.97 55.49 0.78 -29.31 16 20 Si 0.88 23.03 27.74 -169.99 -4.71 18.31 16 21 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 24 C -0.16 -1.99 9.51 -26.70 -0.25 -2.24 16 25 C -0.15 -1.90 9.38 -26.70 -0.25 -2.15 16 26 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 6.30 -51.93 -0.33 0.14 16 32 H 0.06 0.48 6.37 -51.93 -0.33 0.15 16 33 H 0.40 4.66 8.61 -40.82 -0.35 4.31 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 43 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 44 H 0.10 1.01 6.09 -51.93 -0.32 0.69 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.10 1.62 8.00 -51.93 -0.42 1.21 16 47 H 0.10 1.06 6.43 -51.93 -0.33 0.72 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -34.06 371.51 -7.80 -41.86 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -8.55 Total: 11.45 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.53 Total: -8.30 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.31 Total: -57.60 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.06 -7.80 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135434814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.465 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds