Wall clock time and date at job start Tue Mar 31 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46784 * 304.99833 * 5 4 2 7 7 C 1.52995 * 109.47332 * 184.99950 * 5 4 2 8 8 N 1.46493 * 109.47195 * 64.99647 * 5 4 2 9 9 C 1.34784 * 120.00284 * 205.00274 * 8 5 4 10 10 O 1.21286 * 119.99403 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00046 * 180.02562 * 9 8 5 12 12 C 1.52997 * 109.46793 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46914 * 179.97438 * 12 11 9 14 14 C 1.52999 * 115.55126 * 34.33088 * 13 12 11 15 15 C 1.53004 * 117.49841 * 248.62003 * 13 12 11 16 16 C 1.52998 * 60.00313 * 252.51427 * 15 13 12 17 17 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 18 18 C 1.36936 * 120.00314 * 274.99849 * 17 2 1 19 19 H 1.08001 * 120.00159 * 0.02562 * 18 17 2 20 20 C 1.38811 * 119.99842 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 179.72505 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 28 28 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 29 29 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 30 30 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 31 31 H 1.08998 * 109.47243 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.47091 * 299.99695 * 7 5 4 33 33 H 1.09004 * 109.47260 * 59.99584 * 7 5 4 34 34 H 0.97007 * 119.99888 * 25.00459 * 8 5 4 35 35 H 1.08996 * 109.46744 * 299.99667 * 11 9 8 36 36 H 1.09001 * 109.47188 * 60.00179 * 11 9 8 37 37 H 1.08994 * 109.47410 * 299.99934 * 12 11 9 38 38 H 1.09001 * 109.47049 * 60.00165 * 12 11 9 39 39 H 1.09001 * 109.47051 * 85.58028 * 14 13 12 40 40 H 1.08997 * 109.46733 * 205.58385 * 14 13 12 41 41 H 1.08998 * 109.46961 * 325.58081 * 14 13 12 42 42 H 1.09004 * 117.49556 * 0.02562 * 15 13 12 43 43 H 1.08995 * 117.49881 * 145.01765 * 15 13 12 44 44 H 1.08995 * 117.49658 * 252.51661 * 16 15 13 45 45 H 1.09000 * 117.50169 * 107.48626 * 16 15 13 46 46 H 0.97000 * 120.00040 * 94.99981 * 17 2 1 47 47 H 0.96999 * 119.99889 * 180.27497 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3748 -0.9910 0.2734 10 8 5.9863 -0.0857 -0.2534 11 6 5.9807 -1.7330 1.4368 12 6 7.3603 -1.1504 1.7503 13 6 7.9752 -1.9032 2.9319 14 6 7.6383 -3.3935 3.0122 15 6 8.1326 -1.1420 4.2498 16 6 9.3642 -1.4665 3.4020 17 7 2.0183 -0.6905 1.1962 18 6 2.1491 -0.0074 2.3757 19 1 1.8919 1.0404 2.4243 20 6 2.6123 -0.6617 3.5090 21 7 2.7431 -0.0037 4.6414 22 14 3.0578 -2.4738 3.4249 23 1 1.8628 -3.2929 3.7507 24 1 3.5267 -2.8052 2.0554 25 1 4.1381 -2.7639 4.4016 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 5.1508 -1.1477 -2.6701 32 1 3.7723 -2.2741 -2.6698 33 1 3.6264 -0.6887 -3.4657 34 1 3.6647 -2.0585 0.2386 35 1 5.3355 -1.6298 2.3092 36 1 6.0816 -2.7880 1.1820 37 1 8.0052 -1.2538 0.8778 38 1 7.2598 -0.0953 2.0049 39 1 8.3396 -3.9581 2.3978 40 1 7.7115 -3.7272 4.0472 41 1 6.6238 -3.5567 2.6487 42 1 7.7977 -0.1050 4.2751 43 1 7.9960 -1.7029 5.1743 44 1 10.0378 -2.2410 3.7688 45 1 9.8399 -0.6430 2.8694 46 1 2.2490 -1.6317 1.1527 47 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135840544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:12 Heat of formation + Delta-G solvation = -13.321884 kcal Electronic energy + Delta-G solvation = -24040.732227 eV Core-core repulsion = 20838.320431 eV Total energy + Delta-G solvation = -3202.411795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.57108 -38.13842 -36.87875 -34.28809 -32.47446 -31.94850 -30.61850 -29.07518 -28.09337 -26.42164 -24.68671 -23.35284 -22.24989 -21.06612 -20.51298 -19.52945 -18.54934 -17.57194 -16.69939 -16.00568 -15.20724 -15.08796 -14.77472 -14.34028 -14.24922 -13.53865 -13.38654 -13.28516 -12.86352 -12.80312 -12.61995 -12.38070 -12.16330 -12.06564 -11.95984 -11.81310 -11.72211 -11.35697 -11.18604 -11.01690 -10.79607 -10.75583 -10.65518 -10.48882 -10.22916 -9.99494 -9.92129 -9.61087 -9.38871 -9.22515 -8.99833 -8.46661 -7.25963 -5.78329 -3.12524 3.10303 3.21036 3.31713 3.37233 3.72245 3.93793 4.50459 4.83087 4.90432 4.99270 5.08842 5.12362 5.24812 5.33823 5.48784 5.50014 5.53970 5.56069 5.60769 5.76018 5.76406 5.85709 5.88723 5.89545 5.91843 5.95860 6.05847 6.10471 6.15100 6.23355 6.26913 6.28922 6.33147 6.36524 6.41448 6.45075 6.50413 6.59087 6.79124 6.98113 7.07550 7.97091 8.06939 8.40006 8.81492 9.17258 9.89164 10.09327 11.40594 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.007111 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.288476 B = 3936.793010 C = 5215.637669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.056 0.944 4 C -0.136 4.136 5 C 0.147 3.853 6 H 0.086 0.914 7 C -0.161 4.161 8 N -0.707 5.707 9 C 0.526 3.474 10 O -0.557 6.557 11 C -0.145 4.145 12 C -0.061 4.061 13 C -0.129 4.129 14 C -0.122 4.122 15 C -0.172 4.172 16 C -0.177 4.177 17 N -0.741 5.741 18 C -0.233 4.233 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.878 3.122 23 H -0.290 1.290 24 H -0.280 1.280 25 H -0.287 1.287 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.354 0.646 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -6.711 -9.135 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.174 4.174 5 C 0.042 3.958 6 H 0.104 0.896 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.314 3.686 10 O -0.436 6.436 11 C -0.184 4.184 12 C -0.098 4.098 13 C -0.129 4.129 14 C -0.179 4.179 15 C -0.209 4.209 16 C -0.214 4.214 17 N -0.385 5.385 18 C -0.363 4.363 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.580 5.580 22 Si 0.710 3.290 23 H -0.217 1.217 24 H -0.208 1.208 25 H -0.213 1.213 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.235 0.765 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.187 0.813 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.387 -5.884 -9.323 12.741 hybrid contribution -0.097 -1.703 0.484 1.773 sum 6.289 -7.588 -8.839 13.238 Atomic orbital electron populations 1.22396 0.98840 1.00720 1.00461 1.20243 0.91814 0.95993 0.85361 0.92584 1.22241 0.94150 1.01439 0.99617 1.20831 0.92437 0.97557 0.84957 0.89597 1.22198 1.01802 1.00680 0.97306 1.46164 1.18167 1.37611 1.34041 1.20440 0.81135 0.83358 0.83716 1.90615 1.62006 1.31033 1.59904 1.21871 0.98283 1.00087 0.98186 1.20802 0.93839 0.99342 0.95856 1.21518 0.99319 0.95655 0.96380 1.21483 1.01940 0.92882 1.01633 1.23173 1.01631 1.01635 0.94482 1.22996 0.90702 1.03287 1.04392 1.42814 1.79567 1.08886 1.07269 1.19064 1.36264 0.95546 0.85402 0.89315 1.24632 1.01924 0.96898 0.95677 1.69679 1.52776 1.35182 1.00368 0.86833 0.78139 0.87575 0.76411 1.21745 1.20792 1.21282 0.93742 0.92398 0.94234 0.91964 0.90442 0.92388 0.92974 0.92045 0.76547 0.88316 0.89521 0.91265 0.90752 0.92374 0.92616 0.91583 0.88435 0.89049 0.89204 0.88925 0.81256 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.18 3.15 2.89 -67.93 -0.20 2.95 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.93 4.43 -26.74 -0.12 -2.05 16 5 C 0.15 2.29 2.57 -67.94 -0.17 2.12 16 6 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 7 C -0.16 -2.08 9.48 37.15 0.35 -1.73 16 8 N -0.71 -12.28 3.80 -53.81 -0.20 -12.49 16 9 C 0.53 10.07 7.79 -10.98 -0.09 9.99 16 10 O -0.56 -11.98 15.65 5.55 0.09 -11.90 16 11 C -0.14 -2.53 4.27 -27.88 -0.12 -2.65 16 12 C -0.06 -1.00 4.69 -26.73 -0.13 -1.12 16 13 C -0.13 -1.88 2.47 -154.50 -0.38 -2.26 16 14 C -0.12 -1.63 9.49 37.16 0.35 -1.27 16 15 C -0.17 -2.53 9.82 -26.73 -0.26 -2.79 16 16 C -0.18 -2.24 9.97 -26.73 -0.27 -2.51 16 17 N -0.74 -15.98 3.65 -53.43 -0.19 -16.18 16 18 C -0.23 -6.21 10.41 -15.06 -0.16 -6.37 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 22 Si 0.88 20.38 25.12 -169.99 -4.27 16.11 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -5.54 4.59 56.52 0.26 -5.28 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 6.78 5.10 -40.82 -0.21 6.58 16 35 H 0.10 1.97 4.98 -51.93 -0.26 1.71 16 36 H 0.09 1.30 6.45 -51.93 -0.33 0.96 16 37 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.07 1.35 7.86 -51.93 -0.41 0.95 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 41 H 0.07 0.92 5.59 -51.93 -0.29 0.63 16 42 H 0.10 1.52 8.05 -51.93 -0.42 1.10 16 43 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.35 7.31 3.78 -40.82 -0.15 7.15 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -30.59 361.72 -7.77 -38.35 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -8.48 Total: 18.23 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.92 Total: -10.04 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.38 Total: -56.20 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.27 Total: 16.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.59 -7.77 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135840544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.031 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds