Wall clock time and date at job start Tue Mar 31 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 C 1.53005 * 109.47290 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47136 * 180.02562 * 21 20 18 23 23 C 1.52997 * 115.55089 * 34.32822 * 22 21 20 24 24 C 1.53000 * 117.49510 * 248.62084 * 22 21 20 25 25 C 1.52995 * 60.00089 * 252.51171 * 24 22 21 26 26 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 27 27 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 29 29 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 30 30 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 31 31 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 32 32 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 33 33 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 34 34 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 35 35 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 36 36 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 37 37 H 1.08998 * 109.47094 * 299.99834 * 20 18 17 38 38 H 1.09004 * 109.47264 * 59.99904 * 20 18 17 39 39 H 1.09007 * 109.46725 * 300.00029 * 21 20 18 40 40 H 1.09002 * 109.46815 * 59.99486 * 21 20 18 41 41 H 1.09006 * 109.46939 * 85.58806 * 23 22 21 42 42 H 1.09007 * 109.46909 * 205.58096 * 23 22 21 43 43 H 1.09001 * 109.47499 * 325.58554 * 23 22 21 44 44 H 1.08999 * 117.49927 * 0.02562 * 24 22 21 45 45 H 1.09003 * 117.49916 * 145.02093 * 24 22 21 46 46 H 1.08997 * 117.50233 * 252.51166 * 25 24 22 47 47 H 1.09001 * 117.49808 * 107.48936 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 7.1517 -1.3442 1.7868 13 14 5.0159 -3.0713 2.1554 14 1 5.3486 -4.3511 1.4796 15 1 5.3933 -3.1559 3.5891 16 1 3.5573 -2.8161 2.0418 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 6 2.7011 0.2543 4.7588 22 6 3.2113 -0.4670 6.0079 23 6 4.2556 -1.5573 5.7601 24 6 2.2193 -0.6851 7.1522 25 6 3.3358 0.3513 7.2947 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6053 -0.2616 -2.1370 30 1 1.7516 -1.7714 -1.2057 31 1 5.1507 -1.1476 -2.6703 32 1 3.7722 -2.2739 -2.6701 33 1 3.6263 -0.6885 -3.4659 34 1 3.6648 -2.0584 0.2384 35 1 7.5432 -1.8240 2.5336 36 1 2.2491 -1.6318 1.1525 37 1 1.9761 -1.5507 3.8324 38 1 3.6482 -1.1214 3.3985 39 1 3.3743 1.0759 4.5136 40 1 1.7021 0.6472 4.9480 41 1 5.2477 -1.1075 5.7192 42 1 4.2199 -2.2854 6.5705 43 1 4.0432 -2.0556 4.8142 44 1 1.2033 -0.3151 7.0149 45 1 2.3106 -1.6057 7.7287 46 1 4.1615 0.1126 7.9649 47 1 3.0543 1.4034 7.2513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135840545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:15 Heat of formation + Delta-G solvation = -12.485047 kcal Electronic energy + Delta-G solvation = -24054.759958 eV Core-core repulsion = 20852.384451 eV Total energy + Delta-G solvation = -3202.375507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.57680 -38.16556 -36.88510 -34.29337 -32.48521 -31.95285 -30.62895 -29.07512 -28.00886 -26.42342 -24.69550 -23.35938 -22.34537 -21.07192 -20.51568 -19.53535 -18.53814 -17.58102 -16.72082 -15.99507 -15.27318 -15.11613 -14.79599 -14.35420 -14.12630 -13.74130 -13.40060 -13.10590 -12.92177 -12.78702 -12.60755 -12.33944 -12.09263 -12.07506 -11.91623 -11.84433 -11.74749 -11.41950 -11.13066 -10.94034 -10.92174 -10.77998 -10.61107 -10.47900 -10.26467 -10.03076 -9.88281 -9.58575 -9.40232 -9.22900 -9.00243 -8.47046 -7.26650 -5.78965 -3.13165 3.09286 3.20685 3.29334 3.35489 3.71780 3.89158 4.49073 4.79844 4.88980 4.99063 5.04262 5.14077 5.24069 5.33108 5.44993 5.50758 5.55388 5.56913 5.64703 5.70049 5.75570 5.85657 5.89386 5.91594 5.92616 6.01554 6.05465 6.11409 6.15235 6.20967 6.27998 6.29264 6.34033 6.35398 6.40824 6.49089 6.53030 6.59960 6.78976 6.97886 7.07282 7.96550 8.06608 8.39244 8.81159 9.16494 9.88395 10.08658 11.39949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.007110 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.435385 B = 3937.385353 C = 5326.219999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.086 0.914 4 C -0.136 4.136 5 C 0.175 3.825 6 H 0.056 0.944 7 C -0.164 4.164 8 N -0.741 5.741 9 C -0.232 4.232 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.874 3.126 14 H -0.290 1.290 15 H -0.282 1.282 16 H -0.280 1.280 17 N -0.707 5.707 18 C 0.526 3.474 19 O -0.557 6.557 20 C -0.145 4.145 21 C -0.061 4.061 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.179 4.179 25 C -0.175 4.175 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.354 0.646 35 H 0.258 0.742 36 H 0.397 0.603 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -1.138 2.757 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.174 4.174 5 C 0.066 3.934 6 H 0.074 0.926 7 C -0.224 4.224 8 N -0.385 5.385 9 C -0.363 4.363 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.580 5.580 13 Si 0.706 3.294 14 H -0.218 1.218 15 H -0.208 1.208 16 H -0.208 1.208 17 N -0.360 5.360 18 C 0.313 3.687 19 O -0.436 6.436 20 C -0.185 4.185 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.183 4.183 24 C -0.216 4.216 25 C -0.212 4.212 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.187 0.813 35 H 0.069 0.931 36 H 0.234 0.766 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.431 -0.187 2.831 12.750 hybrid contribution -0.305 -1.677 0.583 1.801 sum -12.736 -1.864 3.414 13.317 Atomic orbital electron populations 1.22200 0.96269 1.01498 1.02024 1.20835 0.92518 0.97951 0.84482 0.89578 1.22240 0.97779 1.00497 0.96930 1.20246 0.89452 0.96217 0.87499 0.92564 1.22396 1.02015 1.00141 0.97876 1.42819 1.19094 1.40201 1.36433 1.19076 0.91323 1.14458 1.11410 0.89288 1.24628 0.96487 0.99181 0.98834 1.69676 1.15776 1.43475 1.29052 0.86946 0.78747 0.83877 0.79804 1.21788 1.20778 1.20794 1.46156 1.66572 1.14046 1.09197 1.20436 0.76427 0.87091 0.84701 1.90615 1.51257 1.16068 1.85615 1.21874 1.03654 0.99596 0.93370 1.20814 1.01473 0.96998 0.90623 1.21552 1.00165 1.00336 0.90226 1.21596 0.98022 0.96654 1.02076 1.23154 0.95195 1.00744 1.02533 1.22993 1.00931 0.97058 1.00236 0.92038 0.92975 0.92395 0.90430 0.91963 0.92386 0.93743 0.94233 0.81269 0.93128 0.76556 0.89834 0.87937 0.90523 0.91405 0.91647 0.92862 0.91415 0.89039 0.89187 0.88975 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16 2 C 0.15 2.29 2.57 -67.93 -0.17 2.11 16 3 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.14 -1.93 4.43 -26.73 -0.12 -2.05 16 5 C 0.17 3.14 2.89 -67.93 -0.20 2.95 16 6 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 7 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 8 N -0.74 -15.95 3.65 -53.43 -0.19 -16.14 16 9 C -0.23 -6.18 10.41 -15.06 -0.16 -6.34 16 10 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 11 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 12 N -0.93 -28.09 13.97 55.49 0.78 -27.31 16 13 Si 0.87 20.04 24.31 -169.99 -4.13 15.91 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.42 6.40 56.52 0.36 -6.06 16 16 H -0.28 -5.53 4.62 56.52 0.26 -5.26 16 17 N -0.71 -12.28 3.80 -53.81 -0.20 -12.49 16 18 C 0.53 10.07 7.79 -10.99 -0.09 9.99 16 19 O -0.56 -11.98 15.64 5.55 0.09 -11.89 16 20 C -0.15 -2.54 4.28 -27.88 -0.12 -2.66 16 21 C -0.06 -1.01 4.69 -26.73 -0.13 -1.13 16 22 C -0.12 -1.80 2.47 -154.51 -0.38 -2.18 16 23 C -0.13 -2.01 9.49 37.16 0.35 -1.65 16 24 C -0.18 -2.18 9.82 -26.73 -0.26 -2.45 16 25 C -0.18 -2.22 9.97 -26.73 -0.27 -2.49 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.35 7.29 3.77 -40.82 -0.15 7.14 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.40 6.79 5.12 -40.82 -0.21 6.58 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.10 2.02 3.48 -51.93 -0.18 1.84 16 39 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 40 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 43 H 0.07 1.17 3.87 -51.93 -0.20 0.97 16 44 H 0.09 1.04 8.05 -51.93 -0.42 0.63 16 45 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -30.18 358.72 -7.63 -37.81 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -8.44 Total: 18.69 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.93 Total: -9.98 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.38 Total: -55.94 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.13 Total: 15.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.18 -7.63 -37.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135840545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.324 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds