Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47281 * 2 1 4 4 C 1.52997 * 109.46970 * 239.99579 * 2 1 3 5 5 C 1.52998 * 109.47001 * 175.00061 * 4 2 1 6 6 H 1.09005 * 109.47274 * 55.00351 * 5 4 2 7 7 C 1.53003 * 109.47339 * 175.00345 * 5 4 2 8 8 N 1.46499 * 109.47189 * 295.00234 * 5 4 2 9 9 C 1.34777 * 119.99970 * 155.00145 * 8 5 4 10 10 O 1.21279 * 119.99894 * 0.02562 * 9 8 5 11 11 C 1.50704 * 119.99732 * 180.02562 * 9 8 5 12 12 C 1.53007 * 109.46941 * 179.97438 * 11 9 8 13 13 C 1.52989 * 109.47076 * 180.02562 * 12 11 9 14 14 C 1.52998 * 115.56568 * 34.31069 * 13 12 11 15 15 C 1.53000 * 117.50008 * 248.62118 * 13 12 11 16 16 C 1.52997 * 60.00347 * 252.51154 * 15 13 12 17 17 N 1.46505 * 109.46760 * 119.99950 * 2 1 3 18 18 C 1.36932 * 120.00065 * 274.99697 * 17 2 1 19 19 H 1.08005 * 120.00204 * 0.02562 * 18 17 2 20 20 C 1.38815 * 120.00374 * 180.02562 * 18 17 2 21 21 N 1.31609 * 120.00456 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99656 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47268 * 89.99717 * 22 20 18 24 24 H 1.48498 * 109.46960 * 210.00188 * 22 20 18 25 25 H 1.48507 * 109.46956 * 330.00035 * 22 20 18 26 26 H 1.08992 * 109.47066 * 60.00082 * 1 2 3 27 27 H 1.09004 * 109.46969 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47193 * 299.99822 * 1 2 3 29 29 H 1.08999 * 109.47042 * 55.00131 * 4 2 1 30 30 H 1.08998 * 109.47685 * 295.00267 * 4 2 1 31 31 H 1.09006 * 109.46764 * 300.00316 * 7 5 4 32 32 H 1.09000 * 109.47356 * 59.99586 * 7 5 4 33 33 H 1.08994 * 109.47380 * 180.02562 * 7 5 4 34 34 H 0.96996 * 119.99814 * 334.99973 * 8 5 4 35 35 H 1.09001 * 109.47085 * 60.00157 * 11 9 8 36 36 H 1.09000 * 109.47063 * 299.99618 * 11 9 8 37 37 H 1.09003 * 109.47037 * 59.99470 * 12 11 9 38 38 H 1.09002 * 109.47099 * 300.00324 * 12 11 9 39 39 H 1.09000 * 109.47691 * 205.68877 * 14 13 12 40 40 H 1.09000 * 109.46743 * 325.69107 * 14 13 12 41 41 H 1.08997 * 109.47164 * 85.68480 * 14 13 12 42 42 H 1.09002 * 117.49696 * 0.02562 * 15 13 12 43 43 H 1.09002 * 117.50343 * 145.02258 * 15 13 12 44 44 H 1.08999 * 117.49685 * 252.51237 * 16 15 13 45 45 H 1.08997 * 117.50044 * 107.48590 * 16 15 13 46 46 H 0.97001 * 119.99868 * 94.99930 * 17 2 1 47 47 H 0.96998 * 120.00401 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1612 1.2134 -1.0867 10 8 5.9359 0.4337 -0.5741 11 6 5.5551 2.6564 -1.2701 12 6 6.9699 2.8716 -0.7289 13 6 7.3696 4.3367 -0.9145 14 6 6.2356 5.3537 -0.7709 15 6 8.4706 4.6453 -1.9310 16 6 8.7599 4.7562 -0.4328 17 7 2.0183 -0.6906 1.1962 18 6 2.1491 -0.0075 2.3758 19 1 1.8919 1.0403 2.4244 20 6 2.6122 -0.6617 3.5091 21 7 2.7375 -0.0053 4.6429 22 14 3.0564 -2.4742 3.4253 23 1 4.4889 -2.6165 3.0608 24 1 2.8173 -3.1041 4.7486 25 1 2.2159 -3.1429 2.3996 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2056 31 1 3.8000 -2.4821 -2.3594 32 1 3.6546 -1.0595 -3.4193 33 1 5.1715 -1.3619 -2.5381 34 1 3.3285 1.4127 -1.9028 35 1 4.8579 3.2951 -0.7278 36 1 5.5291 2.9082 -2.3303 37 1 7.6674 2.2328 -1.2708 38 1 6.9955 2.6199 0.3314 39 1 6.4785 6.2516 -1.3391 40 1 5.3100 4.9220 -1.1517 41 1 6.1102 5.6120 0.2806 42 1 8.9099 3.8045 -2.4679 43 1 8.3871 5.5728 -2.4975 44 1 8.8666 5.7567 -0.0135 45 1 9.3898 3.9884 0.0164 46 1 2.2490 -1.6318 1.1527 47 1 3.0607 -0.4625 5.4350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135840547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = -23.681947 kcal Electronic energy + Delta-G solvation = -23048.059870 eV Core-core repulsion = 19845.198829 eV Total energy + Delta-G solvation = -3202.861041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71102 -38.33408 -36.90363 -34.52066 -32.49269 -32.00500 -30.54656 -29.19696 -28.28935 -26.40855 -24.91428 -23.26994 -22.52251 -21.18952 -20.21048 -19.78406 -18.76585 -17.64111 -16.88952 -15.91980 -15.51646 -15.29235 -14.74878 -14.37318 -14.10272 -13.89516 -13.61013 -13.20641 -13.06344 -12.76939 -12.62662 -12.36840 -12.28971 -12.17945 -12.02427 -11.96185 -11.67116 -11.58089 -11.23275 -11.14386 -10.96690 -10.87777 -10.63688 -10.46468 -10.26111 -10.17671 -9.92987 -9.63732 -9.52486 -9.41785 -8.86817 -8.69166 -7.20306 -5.70618 -3.05183 3.03124 3.42973 3.46623 3.47513 3.52101 3.68009 4.59358 4.65448 4.66254 4.83610 4.86884 5.02445 5.16103 5.26313 5.30691 5.33342 5.37663 5.53525 5.55682 5.57927 5.61984 5.67631 5.78572 5.79585 5.81888 5.84712 5.90291 5.97793 6.03145 6.03803 6.06193 6.20602 6.25278 6.27725 6.34496 6.36957 6.44918 6.58558 6.78472 6.89409 7.00660 7.84388 8.04494 8.48259 8.61814 9.26999 10.00134 10.19305 11.48059 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.004668 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.710233 B = 5996.735925 C = 6780.221880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.055 0.945 4 C -0.134 4.134 5 C 0.142 3.858 6 H 0.098 0.902 7 C -0.161 4.161 8 N -0.719 5.719 9 C 0.513 3.487 10 O -0.538 6.538 11 C -0.138 4.138 12 C -0.066 4.066 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.179 4.179 16 C -0.176 4.176 17 N -0.745 5.745 18 C -0.238 4.238 19 H 0.088 0.912 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.880 3.120 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 7.333 -17.968 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.116 0.884 7 C -0.220 4.220 8 N -0.371 5.371 9 C 0.299 3.701 10 O -0.414 6.414 11 C -0.178 4.178 12 C -0.104 4.104 13 C -0.125 4.125 14 C -0.180 4.180 15 C -0.215 4.215 16 C -0.213 4.213 17 N -0.389 5.389 18 C -0.368 4.368 19 H 0.105 0.895 20 C -0.189 4.189 21 N -0.583 5.583 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.228 0.772 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.192 0.808 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.350 6.934 -17.403 19.482 hybrid contribution -0.040 -1.010 -0.063 1.013 sum 5.309 5.924 -17.466 19.192 Atomic orbital electron populations 1.22427 0.99070 1.00803 1.00282 1.20190 0.91681 0.95846 0.85528 0.92737 1.22211 0.93955 1.02040 0.99091 1.20966 0.94873 0.80923 0.99465 0.88403 1.22189 1.01593 0.99984 0.98191 1.45973 1.16766 1.11282 1.63043 1.20631 0.81692 0.90314 0.77440 1.90705 1.51198 1.56853 1.42686 1.21736 0.99231 0.93828 1.03013 1.20845 0.94787 0.92101 1.02641 1.21538 0.90488 0.96243 1.04218 1.21494 0.97296 0.97050 1.02163 1.23163 1.03309 1.02843 0.92233 1.23017 0.98817 1.02569 0.96930 1.42777 1.79684 1.09222 1.07177 1.18999 1.36710 0.95340 0.85712 0.89464 1.24622 1.01394 0.97342 0.95592 1.69688 1.52849 1.35533 1.00269 0.86608 0.78691 0.86976 0.76636 1.20935 1.21885 1.20412 0.94382 0.93677 0.92450 0.91600 0.90879 0.91991 0.92983 0.92480 0.77196 0.88416 0.89341 0.91244 0.90445 0.92748 0.91308 0.91951 0.88997 0.89127 0.88940 0.88772 0.80790 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.18 3.21 2.84 -67.93 -0.19 3.02 16 3 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.19 2.52 -67.93 -0.17 2.02 16 6 H 0.10 1.97 7.06 -51.93 -0.37 1.60 16 7 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 8 N -0.72 -10.02 4.45 -53.80 -0.24 -10.26 16 9 C 0.51 8.15 7.79 -10.98 -0.09 8.06 16 10 O -0.54 -11.07 15.64 5.56 0.09 -10.98 16 11 C -0.14 -1.64 4.71 -27.88 -0.13 -1.77 16 12 C -0.07 -0.84 4.69 -26.73 -0.13 -0.97 16 13 C -0.12 -1.31 2.47 -154.51 -0.38 -1.69 16 14 C -0.12 -1.15 9.49 37.16 0.35 -0.80 16 15 C -0.18 -1.65 9.82 -26.73 -0.26 -1.91 16 16 C -0.18 -1.76 9.97 -26.73 -0.27 -2.03 16 17 N -0.75 -17.41 4.30 -53.42 -0.23 -17.64 16 18 C -0.24 -6.73 10.41 -15.06 -0.16 -6.88 16 19 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 22 Si 0.88 22.91 27.73 -169.99 -4.71 18.20 16 23 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.39 4.23 8.60 -40.82 -0.35 3.88 16 35 H 0.10 1.09 6.45 -51.93 -0.33 0.75 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 38 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 40 H 0.07 0.60 5.58 -51.93 -0.29 0.31 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 43 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 47 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -34.11 375.23 -8.30 -42.41 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.70 Total: 10.89 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.93 Total: -9.06 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.31 Total: -57.10 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.11 -8.30 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135840547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.728 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds