Wall clock time and date at job start Tue Mar 31 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46765 * 2 1 4 4 C 1.53003 * 109.47617 * 119.99245 * 2 1 3 5 5 H 1.09001 * 109.47273 * 294.20532 * 4 2 1 6 6 C 1.52996 * 109.46475 * 54.20219 * 4 2 1 7 7 C 1.50696 * 109.46952 * 174.19923 * 4 2 1 8 8 O 1.21277 * 120.00429 * 347.75054 * 7 4 2 9 9 N 1.34784 * 119.99506 * 167.74793 * 7 4 2 10 10 C 1.46495 * 119.99820 * 184.99177 * 9 7 4 11 11 C 1.52995 * 109.47246 * 175.01711 * 10 9 7 12 12 C 1.53002 * 109.47497 * 183.98483 * 11 10 9 13 13 C 1.53006 * 115.54999 * 39.47001 * 12 11 10 14 14 N 1.46504 * 109.46575 * 64.58195 * 13 12 11 15 15 C 1.36932 * 119.99477 * 185.03140 * 14 13 12 16 16 H 1.08001 * 120.00302 * 4.98343 * 15 14 13 17 17 C 1.38823 * 119.99742 * 184.97749 * 15 14 13 18 18 N 1.31618 * 119.99863 * 184.82405 * 17 15 14 19 19 Si 1.86797 * 119.99866 * 4.82767 * 17 15 14 20 20 H 1.48498 * 109.47300 * 84.88232 * 19 17 15 21 21 H 1.48494 * 109.47142 * 204.88084 * 19 17 15 22 22 H 1.48498 * 109.47188 * 324.88157 * 19 17 15 23 23 C 1.53001 * 117.49666 * 253.77152 * 12 11 10 24 24 C 1.52995 * 117.50159 * 185.14582 * 12 11 10 25 25 H 1.09002 * 109.47547 * 299.99755 * 1 2 3 26 26 H 1.08995 * 109.47521 * 60.00847 * 1 2 3 27 27 H 1.09009 * 109.46725 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47547 * 240.00245 * 2 1 3 29 29 H 1.09001 * 109.47166 * 186.92224 * 3 2 1 30 30 H 1.09008 * 109.46644 * 306.91636 * 3 2 1 31 31 H 1.08991 * 109.47548 * 66.91300 * 3 2 1 32 32 H 1.09001 * 109.47114 * 60.00216 * 6 4 2 33 33 H 1.09000 * 109.46980 * 179.97438 * 6 4 2 34 34 H 1.09001 * 109.47969 * 299.99997 * 6 4 2 35 35 H 0.96999 * 120.00197 * 4.98996 * 9 7 4 36 36 H 1.09010 * 109.46947 * 295.01357 * 10 9 7 37 37 H 1.08997 * 109.47948 * 55.01116 * 10 9 7 38 38 H 1.08999 * 109.47200 * 303.97995 * 11 10 9 39 39 H 1.09000 * 109.47321 * 63.97991 * 11 10 9 40 40 H 1.08994 * 109.46824 * 184.57504 * 13 12 11 41 41 H 1.09000 * 109.47088 * 304.58269 * 13 12 11 42 42 H 0.96996 * 120.00139 * 5.02279 * 14 13 12 43 43 H 0.96998 * 119.99617 * 180.02562 * 18 17 15 44 44 H 1.08998 * 117.50095 * 359.97438 * 23 12 11 45 45 H 1.08999 * 117.49921 * 145.02020 * 23 12 11 46 46 H 1.08997 * 117.50217 * 214.97762 * 24 12 11 47 47 H 1.09002 * 117.49873 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.7640 -0.1508 2.1362 6 6 1.4146 -2.1153 1.3244 7 6 3.5402 -0.8466 1.1795 8 8 4.1209 -0.6100 0.1414 9 7 4.2365 -1.2217 2.2709 10 6 5.7009 -1.2382 2.2354 11 6 6.2410 -1.5775 3.6261 12 6 7.7689 -1.4975 3.6134 13 6 8.3626 -0.3451 2.8008 14 7 7.9761 0.9308 3.4083 15 6 8.3064 2.1093 2.7944 16 1 8.7802 2.0984 1.8239 17 6 8.0321 3.3182 3.4193 18 7 8.2619 4.4512 2.7903 19 14 7.3371 3.3367 5.1531 20 1 8.4488 3.2422 6.1331 21 1 6.5893 4.6006 5.3731 22 1 6.4206 2.1819 5.3313 23 6 8.5455 -2.8154 3.6428 24 6 8.5090 -1.9210 4.8837 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1228 1.4452 -0.1239 30 1 1.5789 1.9909 -0.8217 31 1 1.7811 1.9195 0.9453 32 1 1.6907 -2.6856 0.4375 33 1 1.7783 -2.6293 2.2142 34 1 0.3295 -2.0247 1.3748 35 1 3.7680 -1.4807 3.0798 36 1 6.0386 -1.9894 1.5213 37 1 6.0683 -0.2578 1.9322 38 1 5.8461 -0.8672 4.3524 39 1 5.9322 -2.5864 3.8996 40 1 9.4493 -0.4288 2.7921 41 1 7.9865 -0.3896 1.7787 42 1 7.4861 0.9406 4.2454 43 1 8.0707 5.2959 3.2271 44 1 7.9680 -3.7394 3.6716 45 1 9.4797 -2.8617 3.0831 46 1 9.4191 -1.3790 5.1403 47 1 7.9075 -2.2571 5.7283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167373750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:00 Heat of formation + Delta-G solvation = -24.861783 kcal Electronic energy + Delta-G solvation = -23048.942631 eV Core-core repulsion = 19846.030428 eV Total energy + Delta-G solvation = -3202.912203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99345 -38.46985 -36.29402 -34.67748 -34.04792 -31.37836 -31.04005 -29.60871 -27.34797 -26.23147 -24.67489 -23.17484 -22.46359 -21.81728 -20.89458 -19.63490 -18.73945 -17.49280 -17.01066 -16.03490 -15.41783 -15.10947 -14.71989 -14.56025 -14.51515 -14.15085 -13.74812 -13.58263 -13.25158 -12.84638 -12.64056 -12.40702 -12.31444 -12.27463 -12.16218 -11.90297 -11.64312 -11.51073 -11.39779 -11.12354 -10.93139 -10.88843 -10.77700 -10.69882 -10.59147 -10.20168 -9.87135 -9.59905 -9.47530 -9.43878 -8.84107 -8.81293 -7.17932 -5.73009 -3.07824 2.83546 3.31369 3.36731 3.41971 3.45978 3.94437 4.53120 4.61910 4.68388 4.79734 4.87572 4.94596 5.05840 5.10437 5.20727 5.26949 5.32972 5.39724 5.45722 5.55555 5.60827 5.64671 5.68353 5.72086 5.73586 5.77631 5.78804 5.88423 5.89398 5.99632 6.08071 6.13135 6.24573 6.30177 6.33928 6.36645 6.42722 6.49626 6.60962 6.71075 6.76763 7.65750 8.04900 8.42463 8.46439 9.26107 9.97909 10.18951 11.45563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.005141 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.492331 B = 5445.057047 C = 6909.784448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.153 4.153 4 C -0.108 4.108 5 H 0.092 0.908 6 C -0.144 4.144 7 C 0.515 3.485 8 O -0.532 6.532 9 N -0.731 5.731 10 C 0.116 3.884 11 C -0.085 4.085 12 C -0.127 4.127 13 C 0.189 3.811 14 N -0.750 5.750 15 C -0.241 4.241 16 H 0.089 0.911 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.280 1.280 23 C -0.171 4.171 24 C -0.171 4.171 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.038 0.962 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -16.309 1.092 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.210 4.210 4 C -0.130 4.130 5 H 0.111 0.889 6 C -0.201 4.201 7 C 0.301 3.699 8 O -0.408 6.408 9 N -0.382 5.382 10 C -0.007 4.007 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.062 3.938 14 N -0.395 5.395 15 C -0.371 4.371 16 H 0.107 0.893 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.207 1.207 23 C -0.209 4.209 24 C -0.208 4.208 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.229 -15.944 0.158 20.719 hybrid contribution -0.663 0.081 1.811 1.930 sum -13.892 -15.863 1.969 21.178 Atomic orbital electron populations 1.21939 0.95183 1.01623 1.01860 1.20920 0.94914 0.96731 0.97065 1.21910 1.02930 0.94928 1.01264 1.21420 0.91895 0.98579 1.01062 0.88942 1.21823 1.01294 0.94715 1.02302 1.20563 0.89548 0.76274 0.83483 1.90702 1.71487 1.48931 1.29693 1.46040 1.07806 1.69199 1.15170 1.21516 0.78306 1.03895 0.96949 1.21185 0.93271 1.00971 0.96860 1.21665 0.92917 0.96808 1.01436 1.20224 0.96003 0.83006 0.94555 1.42615 1.68459 1.01506 1.26938 1.19062 1.33549 0.82593 1.01914 0.89287 1.24669 1.01270 0.95175 0.97900 1.69709 1.54519 0.96689 1.37202 0.86577 0.78847 0.76497 0.86573 1.21075 1.21913 1.20702 1.23025 1.02260 0.93633 1.01980 1.22966 1.02862 1.03455 0.91506 0.92737 0.92523 0.92442 0.90181 0.91113 0.92759 0.93135 0.92077 0.92401 0.91130 0.77225 0.92058 0.88861 0.91083 0.92005 0.95757 0.94372 0.80613 0.93123 0.89170 0.88752 0.88463 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.68 37.15 0.32 -0.96 16 2 C -0.08 -0.88 2.17 -90.62 -0.20 -1.08 16 3 C -0.15 -2.03 8.87 37.16 0.33 -1.70 16 4 C -0.11 -1.18 2.31 -91.77 -0.21 -1.39 16 5 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 6 C -0.14 -1.18 8.66 37.16 0.32 -0.86 16 7 C 0.52 7.58 6.62 -10.98 -0.07 7.51 16 8 O -0.53 -10.11 14.56 5.56 0.08 -10.03 16 9 N -0.73 -9.65 5.55 -60.30 -0.33 -9.99 16 10 C 0.12 1.78 4.98 -4.05 -0.02 1.76 16 11 C -0.09 -1.15 5.35 -26.73 -0.14 -1.30 16 12 C -0.13 -1.91 1.84 -154.51 -0.29 -2.20 16 13 C 0.19 3.69 5.27 -4.04 -0.02 3.67 16 14 N -0.75 -17.81 5.21 -59.90 -0.31 -18.12 16 15 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 16 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 19 Si 0.88 22.43 27.76 -169.99 -4.72 17.71 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.28 -6.64 6.51 56.52 0.37 -6.27 16 23 C -0.17 -2.11 9.87 -26.73 -0.26 -2.38 16 24 C -0.17 -2.31 9.97 -26.73 -0.27 -2.57 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.42 6.34 -51.92 -0.33 0.09 16 28 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 29 H 0.07 1.17 6.64 -51.93 -0.34 0.83 16 30 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 6.34 -51.93 -0.33 0.14 16 35 H 0.39 3.94 8.48 -40.82 -0.35 3.59 16 36 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.09 1.84 6.46 -51.93 -0.34 1.50 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.68 7.94 -51.93 -0.41 0.26 16 40 H 0.02 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.04 0.78 6.63 -51.93 -0.34 0.44 16 42 H 0.36 8.41 5.57 -40.82 -0.23 8.18 16 43 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 44 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -33.60 370.70 -8.26 -41.86 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.57 Total: 10.55 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.76 Total: -8.51 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.13 Total: -57.16 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.72 Total: 17.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.60 -8.26 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167373750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds