Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47311 * 239.99322 * 2 1 3 5 5 C 1.53004 * 109.46624 * 65.00375 * 4 2 1 6 6 C 1.54270 * 110.48468 * 185.00074 * 5 4 2 7 7 C 1.53869 * 106.63967 * 217.73631 * 6 5 4 8 8 C 1.54268 * 106.60115 * 359.97438 * 7 6 5 9 9 C 1.54895 * 104.19476 * 23.60777 * 8 7 6 10 10 C 1.50703 * 109.46568 * 119.99732 * 2 1 3 11 11 O 1.21292 * 119.99570 * 120.00178 * 10 2 1 12 12 N 1.34774 * 120.00575 * 299.99503 * 10 2 1 13 13 C 1.46497 * 120.00547 * 180.02562 * 12 10 2 14 14 C 1.52993 * 109.47263 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.47230 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.46756 * 180.02562 * 15 14 13 17 17 C 1.36941 * 119.99389 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00283 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00039 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00080 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99877 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46785 * 90.00027 * 21 19 17 23 23 H 1.48495 * 109.47212 * 210.00233 * 21 19 17 24 24 H 1.48504 * 109.47180 * 330.00636 * 21 19 17 25 25 H 1.09000 * 109.46748 * 60.00136 * 1 2 3 26 26 H 1.08998 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47189 * 300.00279 * 1 2 3 28 28 H 1.09002 * 109.47155 * 305.00707 * 4 2 1 29 29 H 1.08997 * 109.47231 * 185.00049 * 4 2 1 30 30 H 1.08997 * 110.53944 * 307.61164 * 5 4 2 31 31 H 1.09002 * 110.03399 * 98.42629 * 6 5 4 32 32 H 1.08995 * 110.02943 * 337.04529 * 6 5 4 33 33 H 1.08999 * 110.03405 * 119.26051 * 7 6 5 34 34 H 1.08996 * 110.03529 * 240.68999 * 7 6 5 35 35 H 1.08997 * 110.48788 * 142.28685 * 8 7 6 36 36 H 1.09001 * 110.48482 * 264.93365 * 8 7 6 37 37 H 1.09001 * 110.75082 * 80.37254 * 9 8 7 38 38 H 1.08991 * 110.75596 * 203.55944 * 9 8 7 39 39 H 0.97000 * 119.99520 * 0.02562 * 12 10 2 40 40 H 1.08998 * 109.47094 * 300.00715 * 13 12 10 41 41 H 1.08997 * 109.46694 * 60.00205 * 13 12 10 42 42 H 1.08998 * 109.47397 * 300.00220 * 14 13 12 43 43 H 1.08997 * 109.47351 * 60.00298 * 14 13 12 44 44 H 1.08999 * 109.46424 * 299.99790 * 15 14 13 45 45 H 1.08997 * 109.46843 * 59.99824 * 15 14 13 46 46 H 0.96992 * 120.00513 * 359.97438 * 16 15 14 47 47 H 0.96992 * 119.99588 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.0285 -0.7002 -3.7735 7 6 2.5038 0.3510 -4.7916 8 6 2.3825 1.7233 -4.0973 9 6 2.4392 1.3905 -2.5856 10 6 2.0322 -0.7104 1.2306 11 8 2.7295 -1.6966 1.1193 12 7 1.7067 -0.2499 2.4547 13 6 2.1953 -0.9401 3.6509 14 6 1.6848 -0.2192 4.9000 15 6 2.1957 -0.9398 6.1494 16 7 1.7062 -0.2498 7.3454 17 6 2.0381 -0.7169 8.5892 18 1 2.6602 -1.5941 8.6884 19 6 1.5739 -0.0635 9.7226 20 7 1.8924 -0.5127 10.9180 21 14 0.4973 1.4534 9.5511 22 1 -0.9297 1.0449 9.5053 23 1 0.7182 2.3512 10.7131 24 1 0.8474 2.1699 8.2983 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6053 -1.7199 -1.2950 29 1 3.1263 -0.7996 -1.2054 30 1 0.5648 0.2735 -2.4873 31 1 1.1652 -1.2372 -4.1667 32 1 2.8352 -1.3999 -3.5550 33 1 3.5414 0.1621 -5.0666 34 1 1.8712 0.3244 -5.6788 35 1 3.2158 2.3676 -4.3776 36 1 1.4327 2.1954 -4.3486 37 1 3.4689 1.2384 -2.2620 38 1 1.9635 2.1763 -1.9990 39 1 1.1488 0.5386 2.5436 40 1 1.8324 -1.9679 3.6510 41 1 3.2853 -0.9398 3.6507 42 1 2.0474 0.8087 4.9000 43 1 0.5948 -0.2200 4.9000 44 1 1.8333 -1.9678 6.1495 45 1 3.2856 -0.9387 6.1492 46 1 1.1478 0.5383 7.2564 47 1 1.5684 -0.0559 11.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167557361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = -65.947035 kcal Electronic energy + Delta-G solvation = -21709.600480 eV Core-core repulsion = 18504.906687 eV Total energy + Delta-G solvation = -3204.693793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18457 -38.62860 -36.22521 -34.71281 -34.46620 -32.01032 -30.36623 -29.49239 -28.99404 -26.13803 -25.52834 -23.25671 -21.99545 -21.30814 -20.87052 -20.12548 -19.61010 -17.62001 -17.01251 -16.49456 -15.91533 -15.76393 -15.18782 -15.07565 -14.54704 -14.22046 -14.01275 -13.70033 -13.47063 -13.31258 -13.19493 -12.81670 -12.46578 -12.44105 -12.02499 -11.80890 -11.58600 -11.53657 -11.35332 -11.20019 -11.04846 -11.03131 -10.90108 -10.84105 -10.77240 -10.71651 -10.62069 -10.17799 -9.75251 -9.60050 -9.09109 -8.91464 -7.25590 -5.77897 -3.14043 2.58123 3.10370 3.35184 3.37491 3.43408 4.16435 4.25872 4.33508 4.53245 4.57381 4.66498 4.68266 4.93029 5.02377 5.07066 5.11920 5.16537 5.19866 5.20962 5.29945 5.34455 5.43845 5.48798 5.51299 5.52666 5.55981 5.61642 5.72547 5.74217 5.79246 5.80725 5.90339 5.92565 5.95124 5.96460 6.03703 6.14014 6.17083 6.40768 6.67723 6.70889 7.43106 7.98265 8.16241 8.40920 9.19610 9.91662 10.11207 11.40455 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040790 B = 0.002250 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.283990 B =12441.112591 C =12776.314958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.097 0.903 4 C -0.092 4.092 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.126 4.126 9 C -0.123 4.123 10 C 0.513 3.487 11 O -0.542 6.542 12 N -0.729 5.729 13 C 0.122 3.878 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 4.995 -32.435 32.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 H 0.115 0.885 4 C -0.129 4.129 5 C -0.113 4.113 6 C -0.159 4.159 7 C -0.163 4.163 8 C -0.163 4.163 9 C -0.160 4.160 10 C 0.299 3.701 11 O -0.419 6.419 12 N -0.380 5.380 13 C -0.002 4.002 14 C -0.180 4.180 15 C 0.032 3.968 16 N -0.402 5.402 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.193 4.193 20 N -0.581 5.581 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.140 4.114 -32.315 32.646 hybrid contribution -1.042 1.517 0.188 1.850 sum -3.183 5.631 -32.127 32.772 Atomic orbital electron populations 1.21838 0.93004 1.02879 1.02621 1.21339 0.97548 1.00993 0.93338 0.88540 1.21441 1.01766 0.98618 0.91119 1.22111 1.00055 0.94998 0.94099 1.22193 1.01038 0.97882 0.94811 1.22132 1.01147 0.94846 0.98187 1.22355 1.01533 0.96949 0.95501 1.22626 1.00485 0.96896 0.96020 1.20691 0.80066 0.84646 0.84678 1.90705 1.37905 1.26367 1.86890 1.46107 1.53779 1.32193 1.05960 1.21328 0.99530 0.96470 0.82881 1.21989 1.01402 1.00309 0.94251 1.20501 0.96962 0.94899 0.84397 1.42684 1.62221 1.33108 1.02237 1.19079 1.26635 1.10236 0.81600 0.89143 1.24699 1.00528 0.98990 0.95082 1.69705 1.49686 1.41996 0.96761 0.86509 0.81010 0.83903 0.76848 1.21073 1.21692 1.20409 0.91218 0.91991 0.92149 0.91245 0.90957 0.90437 0.91970 0.91570 0.91980 0.92107 0.91861 0.91788 0.91324 0.91626 0.76675 0.91262 0.91267 0.91400 0.91381 0.95175 0.95225 0.80703 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.86 37.16 0.33 -0.62 16 2 C -0.11 -0.90 2.66 -91.77 -0.24 -1.14 16 3 H 0.10 0.65 7.35 -51.93 -0.38 0.27 16 4 C -0.09 -0.77 3.38 -26.73 -0.09 -0.86 16 5 C -0.09 -0.62 2.73 -88.92 -0.24 -0.86 16 6 C -0.12 -0.79 6.37 -25.61 -0.16 -0.96 16 7 C -0.13 -0.75 6.80 -25.62 -0.17 -0.92 16 8 C -0.13 -0.73 6.83 -25.07 -0.17 -0.90 16 9 C -0.12 -0.76 5.65 -24.70 -0.14 -0.90 16 10 C 0.51 6.08 7.15 -10.99 -0.08 6.00 16 11 O -0.54 -8.66 15.92 5.55 0.09 -8.57 16 12 N -0.73 -7.90 5.45 -60.30 -0.33 -8.23 16 13 C 0.12 1.58 5.67 -4.05 -0.02 1.56 16 14 C -0.14 -2.00 5.44 -26.73 -0.15 -2.14 16 15 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16 16 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 17 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 21 Si 0.89 22.04 27.74 -169.99 -4.71 17.32 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 25 H 0.07 0.36 6.43 -51.93 -0.33 0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.71 7.83 -51.93 -0.41 0.31 16 30 H 0.08 0.47 6.32 -51.93 -0.33 0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.47 7.97 -51.93 -0.41 0.06 16 38 H 0.06 0.37 7.95 -51.93 -0.41 -0.05 16 39 H 0.40 3.29 7.89 -40.82 -0.32 2.97 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.36 8.26 5.53 -40.82 -0.23 8.04 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -33.56 367.89 -9.09 -42.66 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.71 Total: 4.35 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.42 Total: -5.94 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.12 Total: -55.36 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.56 -9.09 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167557361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.290 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds