Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47274 * 119.99620 * 2 1 3 5 5 C 1.53000 * 109.47147 * 295.00341 * 4 2 1 6 6 C 1.54261 * 110.03123 * 292.16237 * 5 4 2 7 7 C 1.54891 * 104.19659 * 217.10483 * 6 5 4 8 8 C 1.54896 * 102.74412 * 37.94656 * 7 6 5 9 9 C 1.53881 * 110.02892 * 174.99862 * 5 4 2 10 10 C 1.50696 * 109.47300 * 240.00105 * 2 1 3 11 11 O 1.21284 * 120.00096 * 239.99841 * 10 2 1 12 12 N 1.34774 * 119.99838 * 59.99778 * 10 2 1 13 13 C 1.46506 * 120.00072 * 180.02562 * 12 10 2 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47369 * 179.97438 * 15 14 13 17 17 C 1.36937 * 120.00316 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99647 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00249 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00063 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99522 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47146 * 90.00500 * 21 19 17 23 23 H 1.48501 * 109.46731 * 210.00013 * 21 19 17 24 24 H 1.48493 * 109.47548 * 329.99883 * 21 19 17 25 25 H 1.09000 * 109.47312 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47067 * 299.99917 * 1 2 3 28 28 H 1.09001 * 109.46316 * 55.00434 * 4 2 1 29 29 H 1.08996 * 109.46491 * 174.99808 * 4 2 1 30 30 H 1.08992 * 110.01609 * 53.61067 * 5 4 2 31 31 H 1.08998 * 110.49194 * 335.78478 * 6 5 4 32 32 H 1.09009 * 110.48428 * 98.43172 * 6 5 4 33 33 H 1.08993 * 110.75589 * 279.63090 * 7 6 5 34 34 H 1.09002 * 110.91253 * 156.32586 * 7 6 5 35 35 H 1.08998 * 110.48463 * 203.37817 * 8 7 6 36 36 H 1.09003 * 110.48409 * 80.73409 * 8 7 6 37 37 H 1.08995 * 110.02880 * 238.56990 * 9 5 4 38 38 H 1.09002 * 110.03051 * 359.94959 * 9 5 4 39 39 H 0.97001 * 120.00676 * 359.97438 * 12 10 2 40 40 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 41 41 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 42 42 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 43 43 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 44 44 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 45 45 H 1.09004 * 109.47298 * 59.99717 * 15 14 13 46 46 H 0.96998 * 119.99822 * 0.02562 * 16 15 14 47 47 H 0.97001 * 119.99776 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6353 0.0690 2.4954 6 6 2.3979 1.4091 2.5420 7 6 2.6996 1.6223 4.0462 8 6 3.0219 0.1887 4.5366 9 6 2.0321 -0.7070 3.7635 10 6 2.0324 -0.7104 -1.2304 11 8 2.7297 -1.6964 -1.1192 12 7 1.7068 -0.2499 -2.4545 13 6 2.1947 -0.9408 -3.6507 14 6 1.6853 -0.2191 -4.9000 15 6 2.1943 -0.9410 -6.1492 16 7 1.7061 -0.2504 -7.3454 17 6 2.0365 -0.7184 -8.5891 18 1 2.6574 -1.5965 -8.6882 19 6 1.5743 -0.0637 -9.7225 20 7 1.8915 -0.5139 -10.9179 21 14 0.5010 1.4554 -9.5510 22 1 1.3600 2.6659 -9.5053 23 1 -0.4192 1.5451 -10.7132 24 1 -0.2913 1.3631 -8.2985 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6055 -1.7197 1.2951 29 1 3.1263 -0.7994 1.2055 30 1 0.5605 0.2501 2.4894 31 1 3.3249 1.3406 1.9730 32 1 1.7734 2.2169 2.1601 33 1 1.8262 2.0200 4.5629 34 1 3.5590 2.2790 4.1814 35 1 2.8530 0.1058 5.6102 36 1 4.0498 -0.0769 4.2895 37 1 1.1500 -0.9016 4.3734 38 1 2.5122 -1.6469 3.4912 39 1 1.1488 0.5385 -2.5436 40 1 3.2847 -0.9412 -3.6509 41 1 1.8310 -1.9684 -3.6506 42 1 0.5953 -0.2184 -4.9000 43 1 2.0493 0.8083 -4.8998 44 1 3.2843 -0.9421 -6.1494 45 1 1.8299 -1.9683 -6.1490 46 1 1.1493 0.5389 -7.2564 47 1 1.5688 -0.0562 -11.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167557363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -65.603963 kcal Electronic energy + Delta-G solvation = -21744.073057 eV Core-core repulsion = 18539.394140 eV Total energy + Delta-G solvation = -3204.678916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20693 -38.66251 -36.22220 -34.68422 -34.46270 -32.00835 -30.34704 -29.47451 -28.98163 -26.16501 -25.53195 -23.23010 -21.98028 -21.30943 -21.05863 -20.05423 -19.51422 -17.62057 -17.00638 -16.52493 -15.91033 -15.73088 -15.27976 -15.06369 -14.53939 -14.14528 -14.03377 -13.71209 -13.47322 -13.29932 -13.16675 -12.81944 -12.44889 -12.39543 -12.02536 -11.83077 -11.62305 -11.45366 -11.36517 -11.19811 -11.04675 -11.02597 -10.92562 -10.86931 -10.79243 -10.71681 -10.59463 -10.17838 -9.75247 -9.60088 -9.09192 -8.91516 -7.25658 -5.77927 -3.14056 2.58062 3.10397 3.35187 3.37465 3.43378 4.18759 4.26868 4.32506 4.53582 4.57360 4.64830 4.69119 4.92955 5.03620 5.09018 5.13469 5.17676 5.18553 5.20171 5.30576 5.34372 5.46412 5.48667 5.51400 5.52616 5.54722 5.60610 5.72647 5.75418 5.79542 5.80641 5.91424 5.92638 5.95841 5.97432 6.02984 6.13926 6.16914 6.40658 6.67643 6.70813 7.43060 7.98242 8.16168 8.40861 9.19557 9.91627 10.11184 11.40415 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040249 B = 0.002265 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.503921 B =12357.344097 C =12656.261143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.092 4.092 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.122 4.122 10 C 0.513 3.487 11 O -0.542 6.542 12 N -0.729 5.729 13 C 0.122 3.878 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 4.941 32.397 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 H 0.115 0.885 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.160 4.160 7 C -0.164 4.164 8 C -0.163 4.163 9 C -0.159 4.159 10 C 0.299 3.701 11 O -0.419 6.419 12 N -0.380 5.380 13 C -0.002 4.002 14 C -0.179 4.179 15 C 0.032 3.968 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.193 4.193 20 N -0.581 5.581 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.924 4.056 32.269 32.580 hybrid contribution -1.067 1.507 -0.219 1.859 sum -2.991 5.563 32.050 32.667 Atomic orbital electron populations 1.21835 0.93006 1.02869 1.02612 1.21351 0.97557 1.01011 0.93369 0.88540 1.21529 1.01758 0.98540 0.91144 1.21875 1.00160 0.94915 0.94345 1.22491 1.00278 0.96780 0.96450 1.22496 1.01087 0.96798 0.95992 1.22362 0.99478 0.95077 0.99417 1.22209 0.99046 0.98799 0.95893 1.20687 0.80067 0.84644 0.84677 1.90703 1.37904 1.26368 1.86887 1.46110 1.53789 1.32185 1.05961 1.21333 0.99544 0.96454 0.82883 1.21988 1.01417 1.00294 0.94248 1.20501 0.96986 0.94876 0.84397 1.42685 1.62161 1.33168 1.02237 1.19076 1.26582 1.10291 0.81598 0.89145 1.24697 1.00505 0.99019 0.95083 1.69704 1.49792 1.41885 0.96761 0.86509 0.80768 0.84141 0.76849 1.21074 1.21691 1.20409 0.92154 0.91999 0.91225 0.91285 0.90972 0.90719 0.91373 0.91761 0.91688 0.91765 0.91951 0.91668 0.91985 0.91521 0.76675 0.91261 0.91269 0.91398 0.91381 0.95175 0.95227 0.80706 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.86 37.16 0.33 -0.63 16 2 C -0.11 -0.91 2.65 -91.77 -0.24 -1.15 16 3 H 0.10 0.66 7.37 -51.93 -0.38 0.27 16 4 C -0.09 -0.77 3.16 -26.73 -0.08 -0.86 16 5 C -0.09 -0.62 2.80 -89.50 -0.25 -0.87 16 6 C -0.12 -0.76 5.45 -25.07 -0.14 -0.90 16 7 C -0.13 -0.74 6.91 -24.73 -0.17 -0.91 16 8 C -0.13 -0.77 6.83 -25.07 -0.17 -0.94 16 9 C -0.12 -0.79 6.46 -25.61 -0.17 -0.96 16 10 C 0.51 6.10 7.15 -10.99 -0.08 6.02 16 11 O -0.54 -8.67 15.92 5.55 0.09 -8.58 16 12 N -0.73 -7.92 5.45 -60.29 -0.33 -8.25 16 13 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 14 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 15 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16 16 N -0.76 -18.07 5.41 -59.91 -0.32 -18.39 16 17 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 21 Si 0.89 22.04 27.73 -169.99 -4.71 17.33 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 25 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.36 6.45 -51.93 -0.33 0.03 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 30 H 0.07 0.45 6.33 -51.93 -0.33 0.12 16 31 H 0.07 0.47 7.76 -51.93 -0.40 0.07 16 32 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 39 H 0.40 3.31 7.89 -40.82 -0.32 2.98 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -33.57 367.56 -9.09 -42.66 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.70 Total: 4.43 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.42 Total: -5.98 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.12 Total: -55.40 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.57 -9.09 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167557363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.946 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds