Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46936 * 2 1 4 4 C 1.53002 * 109.46942 * 119.99794 * 2 1 3 5 5 C 1.52996 * 109.46710 * 184.99667 * 4 2 1 6 6 C 1.53005 * 109.47038 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47365 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47220 * 180.02562 * 7 6 5 9 9 C 1.36938 * 119.99781 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00359 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99685 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99865 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99800 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47198 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47012 * 120.00311 * 13 11 9 16 16 H 1.48502 * 109.47136 * 239.99633 * 13 11 9 17 17 N 1.46498 * 109.46960 * 239.99985 * 2 1 3 18 18 C 1.34775 * 120.00003 * 84.99893 * 17 2 1 19 19 O 1.21281 * 119.99955 * 0.02562 * 18 17 2 20 20 C 1.50704 * 119.99857 * 179.97438 * 18 17 2 21 21 C 1.55238 * 110.46892 * 294.81226 * 20 18 17 22 22 C 1.54894 * 102.58338 * 203.39217 * 21 20 18 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46857 * 300.00068 * 1 2 3 27 27 H 1.09003 * 109.47382 * 60.00008 * 1 2 3 28 28 H 1.08992 * 109.47236 * 305.00145 * 4 2 1 29 29 H 1.09006 * 109.46952 * 65.00356 * 4 2 1 30 30 H 1.09004 * 109.47744 * 299.99805 * 5 4 2 31 31 H 1.08997 * 109.47328 * 60.00315 * 5 4 2 32 32 H 1.09003 * 109.47283 * 300.00158 * 6 5 4 33 33 H 1.08997 * 109.46928 * 59.99918 * 6 5 4 34 34 H 1.09003 * 109.46717 * 300.00098 * 7 6 5 35 35 H 1.08997 * 109.47496 * 59.99860 * 7 6 5 36 36 H 0.96997 * 119.99670 * 359.97438 * 8 7 6 37 37 H 0.97010 * 119.99358 * 179.97438 * 12 11 9 38 38 H 0.97003 * 119.99782 * 265.00446 * 17 2 1 39 39 H 1.09007 * 110.43017 * 57.46396 * 20 18 17 40 40 H 1.08996 * 110.89448 * 85.10781 * 21 20 18 41 41 H 1.08993 * 110.76342 * 321.62447 * 21 20 18 42 42 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 43 43 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 44 44 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 45 45 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 46 46 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 47 47 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3351 2.5626 7 6 5.5997 -1.2266 2.6274 8 7 6.0881 -1.9182 3.8229 9 6 7.4301 -1.9539 4.0929 10 1 8.1285 -1.4726 3.4244 11 6 7.8929 -2.6088 5.2260 12 7 7.0417 -3.1950 6.0411 13 14 9.7236 -2.6580 5.5941 14 1 10.4620 -1.9303 4.5310 15 1 9.9821 -2.0138 6.9068 16 1 10.1821 -4.0699 5.6369 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0183 -2.3571 19 8 1.8590 1.1586 -2.4115 20 6 2.6499 -0.7286 -3.5875 21 6 4.1210 -1.1828 -3.3889 22 6 4.6358 -1.3051 -4.8447 23 6 3.9736 -0.1240 -5.5839 24 6 2.7110 0.2426 -4.7845 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.9995 -1.0729 0.4259 31 1 3.8532 0.4369 1.3573 32 1 3.6403 -0.8759 3.4506 33 1 3.7865 -2.3852 2.5185 34 1 6.0345 -1.6855 1.7394 35 1 5.8878 -0.1763 2.6716 36 1 5.4608 -2.3502 4.4235 37 1 7.3652 -3.6529 6.8327 38 1 2.2489 -1.6318 -1.1526 39 1 2.0134 -1.5822 -3.8209 40 1 4.1652 -2.1464 -2.8814 41 1 4.6872 -0.4298 -2.8409 42 1 4.3220 -2.2529 -5.2820 43 1 5.7215 -1.2132 -4.8743 44 1 4.6553 0.7260 -5.6156 45 1 3.7020 -0.4223 -6.5964 46 1 2.7798 1.2704 -4.4282 47 1 1.8257 0.1226 -5.4091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168748431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = -70.841227 kcal Electronic energy + Delta-G solvation = -22114.757255 eV Core-core repulsion = 18909.851234 eV Total energy + Delta-G solvation = -3204.906021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36159 -37.82067 -36.65821 -35.23324 -33.25068 -31.70282 -30.40104 -29.12904 -28.86496 -27.44014 -24.28903 -22.95910 -21.87335 -20.89818 -20.74347 -20.57701 -19.81253 -17.62791 -17.00002 -16.45419 -16.00711 -15.16222 -15.06532 -14.76748 -14.47343 -13.98648 -13.80424 -13.64164 -13.42007 -13.16544 -12.95024 -12.84098 -12.41889 -12.15110 -11.75721 -11.58998 -11.47480 -11.41288 -11.37727 -11.23726 -11.06740 -10.98288 -10.81707 -10.70782 -10.68313 -10.39547 -10.29818 -9.96102 -9.83515 -9.66141 -9.18459 -8.85554 -6.89450 -5.74957 -3.03240 2.51164 3.03596 3.44180 3.49662 3.52144 4.19176 4.27350 4.44884 4.54555 4.65733 4.87134 4.94154 4.99900 5.04490 5.17397 5.21352 5.26415 5.28005 5.37379 5.42954 5.46410 5.55210 5.55974 5.62994 5.66744 5.70881 5.78319 5.81987 5.87167 5.92454 5.96906 6.01803 6.08710 6.11765 6.25516 6.31567 6.39361 6.43729 6.47684 6.90592 6.94545 7.37293 7.72132 8.10612 8.44548 9.55317 10.14669 10.49221 11.48274 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.002938 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.362997 B = 9527.613695 C =10867.680343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.721 5.721 18 C 0.521 3.479 19 O -0.543 6.543 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.112 4.112 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.400 0.600 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 3.615 -21.380 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.373 5.373 18 C 0.307 3.693 19 O -0.420 6.420 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.216 0.784 37 H 0.064 0.936 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.292 4.510 -21.427 25.615 hybrid contribution 0.869 -0.752 0.569 1.282 sum -12.423 3.758 -20.858 24.566 Atomic orbital electron populations 1.22170 0.95492 1.02002 1.02409 1.21040 0.93673 0.97733 0.84044 0.89448 1.21935 0.96874 1.00900 0.96752 1.21514 0.93966 1.01056 0.98621 1.21730 0.97244 1.00256 0.97129 1.20645 0.91010 0.95295 0.90541 1.42402 1.05354 1.64884 1.25278 1.19303 0.83936 1.28212 1.05435 0.91176 1.24754 0.97743 1.01007 0.97717 1.69680 1.32678 1.40844 1.15188 0.86108 0.85073 0.77216 0.77782 1.20543 1.21854 1.21866 1.46131 1.67311 1.14123 1.09717 1.20558 0.76918 0.87239 0.84591 1.90674 1.50165 1.16156 1.85011 1.22253 0.98366 0.99489 0.93579 1.22562 0.93200 1.01786 0.97689 1.22351 1.00452 0.98550 0.94799 1.22151 0.96864 0.98377 0.98891 1.22065 0.97889 1.00361 0.94677 0.92538 0.91574 0.92360 0.90277 0.91384 0.92117 0.92040 0.92077 0.92139 0.96642 0.96594 0.78359 0.93598 0.76537 0.88371 0.90634 0.90696 0.91414 0.91249 0.91663 0.91803 0.89794 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.38 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.53 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 7 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 8 N -0.74 -19.25 5.60 -59.91 -0.34 -19.59 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 13 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 N -0.72 -6.63 4.52 -53.80 -0.24 -6.87 16 18 C 0.52 5.64 7.10 -10.98 -0.08 5.56 16 19 O -0.54 -7.94 15.08 5.56 0.08 -7.86 16 20 C -0.12 -0.95 3.26 -89.92 -0.29 -1.24 16 21 C -0.11 -0.88 6.34 -24.55 -0.16 -1.04 16 22 C -0.12 -0.86 6.82 -25.07 -0.17 -1.03 16 23 C -0.13 -0.90 6.80 -25.62 -0.17 -1.08 16 24 C -0.11 -0.96 6.19 -25.62 -0.16 -1.12 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 37 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.40 2.89 8.60 -40.82 -0.35 2.54 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.90 6.85 -51.93 -0.36 0.55 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -33.09 375.68 -9.63 -42.72 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.97 Total: 5.63 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.53 Total: -9.35 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.15 Total: -54.50 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.86 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.09 -9.63 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168748431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.121 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds