Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00123 * 4 2 1 6 6 C 1.53004 * 109.46735 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46735 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47164 * 180.02562 * 7 6 5 9 9 C 1.36933 * 120.00033 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00460 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99921 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99997 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47416 * 89.99411 * 13 11 9 15 15 H 1.48497 * 109.47062 * 210.00276 * 13 11 9 16 16 H 1.48508 * 109.46876 * 329.99789 * 13 11 9 17 17 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 18 18 C 1.34784 * 119.99971 * 84.99732 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72827 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47542 * 179.97438 * 21 20 18 23 23 C 1.52997 * 117.50225 * 243.74980 * 22 21 20 24 24 C 1.52998 * 117.50309 * 175.08865 * 22 21 20 25 25 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 27 27 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46897 * 305.00274 * 4 2 1 29 29 H 1.08995 * 109.47110 * 64.99598 * 4 2 1 30 30 H 1.09001 * 109.46785 * 299.99862 * 5 4 2 31 31 H 1.09002 * 109.47226 * 59.99951 * 5 4 2 32 32 H 1.09001 * 109.47302 * 299.99460 * 6 5 4 33 33 H 1.08998 * 109.46952 * 60.00171 * 6 5 4 34 34 H 1.09002 * 109.47308 * 299.99814 * 7 6 5 35 35 H 1.09002 * 109.47226 * 59.99866 * 7 6 5 36 36 H 0.97000 * 119.99816 * 359.97438 * 8 7 6 37 37 H 0.97009 * 119.99863 * 180.02562 * 12 11 9 38 38 H 0.96999 * 119.99984 * 264.99579 * 17 2 1 39 39 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 40 40 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 41 41 H 1.08997 * 109.47244 * 300.00535 * 21 20 18 42 42 H 1.09002 * 109.46787 * 59.99910 * 21 20 18 43 43 H 1.09003 * 115.54600 * 29.41832 * 22 21 20 44 44 H 1.09003 * 117.49712 * 0.02562 * 23 22 21 45 45 H 1.09002 * 117.50024 * 145.01958 * 23 22 21 46 46 H 1.08998 * 117.49663 * 214.98177 * 24 22 21 47 47 H 1.09004 * 117.49572 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5625 7 6 5.5997 -1.2265 2.6272 8 7 6.0882 -1.9182 3.8227 9 6 7.4301 -1.9538 4.0928 10 1 8.1285 -1.4724 3.4243 11 6 7.8930 -2.6097 5.2253 12 7 7.0420 -3.1969 6.0396 13 14 9.7238 -2.6589 5.5933 14 1 10.0932 -1.4855 6.4251 15 1 10.0475 -3.9082 6.3279 16 1 10.4859 -2.6221 4.3193 17 7 2.0183 -0.6905 -1.1962 18 6 2.1469 -0.0181 -2.3572 19 8 1.8538 1.1574 -2.4128 20 6 2.6498 -0.7283 -3.5875 21 6 2.7005 0.2547 -4.7589 22 6 3.2116 -0.4661 -6.0079 23 6 4.5405 0.0053 -6.6016 24 6 3.2263 0.3195 -7.3207 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9994 -1.0727 0.4258 31 1 3.8532 0.4370 1.3572 32 1 3.6404 -0.8760 3.4505 33 1 3.7866 -2.3853 2.5183 34 1 6.0346 -1.6853 1.7393 35 1 5.8876 -0.1762 2.6716 36 1 5.4609 -2.3503 4.4233 37 1 7.3655 -3.6549 6.8313 38 1 2.2490 -1.6317 -1.1527 39 1 3.6491 -1.1201 -3.3980 40 1 1.9776 -1.5506 -3.8326 41 1 1.7010 0.6461 -4.9483 42 1 3.3724 1.0773 -4.5140 43 1 2.9862 -1.5313 -6.0613 44 1 5.0510 0.8288 -6.1021 45 1 5.1893 -0.7496 -7.0459 46 1 3.0110 -0.2289 -8.2378 47 1 2.8722 1.3501 -7.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169873524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = -41.125005 kcal Electronic energy + Delta-G solvation = -21409.949510 eV Core-core repulsion = 18206.332081 eV Total energy + Delta-G solvation = -3203.617429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09174 -37.93919 -36.92089 -35.24535 -33.27424 -32.63615 -31.27532 -30.19101 -27.44108 -25.49695 -24.13404 -22.69813 -22.19183 -21.04133 -20.74009 -20.60868 -20.48877 -17.21727 -16.99916 -16.49196 -15.97584 -15.64108 -15.00424 -14.72712 -14.63070 -14.09088 -13.80967 -13.71031 -13.40562 -13.14819 -12.94892 -12.82648 -12.53459 -12.24301 -11.91334 -11.76769 -11.65597 -11.52999 -11.42920 -11.25248 -10.98531 -10.80612 -10.70192 -10.64103 -10.41227 -10.29890 -10.21655 -9.98693 -9.89561 -9.65601 -9.19298 -8.84935 -6.89420 -5.74614 -3.02941 2.51492 3.01322 3.44763 3.47010 3.49515 3.51432 4.29812 4.45977 4.53439 4.60589 4.63151 4.68917 4.87970 4.92726 4.99528 5.03511 5.16060 5.26682 5.32031 5.37174 5.42950 5.46616 5.55961 5.58590 5.62934 5.65423 5.70927 5.77187 5.79869 5.81714 5.91697 5.96474 6.05044 6.11586 6.24932 6.31508 6.39368 6.42561 6.47620 6.90641 6.94590 7.35930 7.71769 8.09635 8.44815 9.55491 10.14863 10.49465 11.48498 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002525 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.919225 B =11088.453382 C =12623.719200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.724 5.724 18 C 0.512 3.488 19 O -0.544 6.544 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.155 4.155 23 C -0.181 4.181 24 C -0.182 4.182 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.401 0.599 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 4.187 -22.704 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.376 5.376 18 C 0.299 3.701 19 O -0.422 6.422 20 C -0.179 4.179 21 C -0.111 4.111 22 C -0.173 4.173 23 C -0.218 4.218 24 C -0.219 4.219 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.216 0.784 37 H 0.064 0.936 38 H 0.235 0.765 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.970 5.064 -22.747 27.171 hybrid contribution 0.963 -0.769 0.539 1.345 sum -13.007 4.294 -22.208 26.093 Atomic orbital electron populations 1.22168 0.95490 1.01998 1.02415 1.21032 0.93677 0.97726 0.84039 0.89455 1.21936 0.96863 1.00908 0.96766 1.21516 0.93971 1.01064 0.98622 1.21728 0.97240 1.00256 0.97124 1.20651 0.91020 0.95306 0.90555 1.42393 1.05348 1.64886 1.25283 1.19254 0.83936 1.28249 1.05504 0.91235 1.24757 0.97760 1.00978 0.97754 1.69665 1.32779 1.40742 1.15195 0.86172 0.85060 0.77021 0.77859 1.21717 1.21758 1.20773 1.46166 1.67461 1.14148 1.09823 1.20728 0.77284 0.87362 0.84703 1.90693 1.50065 1.16261 1.85149 1.21675 1.03335 0.99809 0.93114 1.20906 1.02326 0.96954 0.90877 1.22359 1.01314 0.99500 0.94162 1.23074 0.90762 1.03646 1.04344 1.22973 1.01782 1.01377 0.95754 0.91582 0.92350 0.92542 0.90280 0.91373 0.92138 0.92028 0.92070 0.92132 0.96636 0.96584 0.78351 0.93552 0.76505 0.88602 0.88936 0.90913 0.90995 0.87747 0.88653 0.88883 0.88908 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.04 7.58 -51.92 -0.39 0.64 16 4 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 7 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 8 N -0.74 -19.29 5.60 -59.91 -0.34 -19.63 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.72 -6.46 4.53 -53.81 -0.24 -6.70 16 18 C 0.51 5.33 7.79 -10.98 -0.09 5.24 16 19 O -0.54 -7.79 15.65 5.56 0.09 -7.70 16 20 C -0.14 -1.02 5.66 -27.88 -0.16 -1.17 16 21 C -0.07 -0.60 4.79 -26.73 -0.13 -0.72 16 22 C -0.16 -1.07 5.73 -90.62 -0.52 -1.59 16 23 C -0.18 -1.26 10.18 -26.70 -0.27 -1.53 16 24 C -0.18 -1.22 10.25 -26.70 -0.27 -1.49 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 37 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.40 2.72 8.60 -40.82 -0.35 2.37 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 43 H 0.10 0.62 8.08 -51.93 -0.42 0.21 16 44 H 0.10 0.68 8.03 -51.93 -0.42 0.27 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -33.38 385.02 -9.94 -43.32 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -9.01 Total: 5.93 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.94 Total: -10.70 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.15 Total: -54.37 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.38 -9.94 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169873524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.197 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds