Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00123 * 4 2 1 6 6 C 1.53004 * 109.46735 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46735 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47164 * 180.02562 * 7 6 5 9 9 C 1.36933 * 120.00033 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00460 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99921 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99997 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47416 * 89.99411 * 13 11 9 15 15 H 1.48497 * 109.47062 * 210.00276 * 13 11 9 16 16 H 1.48508 * 109.46876 * 329.99789 * 13 11 9 17 17 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 18 18 C 1.34784 * 119.99971 * 84.99732 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72827 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47542 * 179.97438 * 21 20 18 23 23 C 1.52997 * 117.50225 * 243.74980 * 22 21 20 24 24 C 1.52998 * 117.50309 * 175.08865 * 22 21 20 25 25 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 27 27 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46897 * 305.00274 * 4 2 1 29 29 H 1.08995 * 109.47110 * 64.99598 * 4 2 1 30 30 H 1.09001 * 109.46785 * 299.99862 * 5 4 2 31 31 H 1.09002 * 109.47226 * 59.99951 * 5 4 2 32 32 H 1.09001 * 109.47302 * 299.99460 * 6 5 4 33 33 H 1.08998 * 109.46952 * 60.00171 * 6 5 4 34 34 H 1.09002 * 109.47308 * 299.99814 * 7 6 5 35 35 H 1.09002 * 109.47226 * 59.99866 * 7 6 5 36 36 H 0.97000 * 119.99816 * 359.97438 * 8 7 6 37 37 H 0.97009 * 119.99863 * 180.02562 * 12 11 9 38 38 H 0.96999 * 119.99984 * 264.99579 * 17 2 1 39 39 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 40 40 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 41 41 H 1.08997 * 109.47244 * 300.00535 * 21 20 18 42 42 H 1.09002 * 109.46787 * 59.99910 * 21 20 18 43 43 H 1.09003 * 115.54600 * 29.41832 * 22 21 20 44 44 H 1.09003 * 117.49712 * 0.02562 * 23 22 21 45 45 H 1.09002 * 117.50024 * 145.01958 * 23 22 21 46 46 H 1.08998 * 117.49663 * 214.98177 * 24 22 21 47 47 H 1.09004 * 117.49572 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5625 7 6 5.5997 -1.2265 2.6272 8 7 6.0882 -1.9182 3.8227 9 6 7.4301 -1.9538 4.0928 10 1 8.1285 -1.4724 3.4243 11 6 7.8930 -2.6097 5.2253 12 7 7.0420 -3.1969 6.0396 13 14 9.7238 -2.6589 5.5933 14 1 10.0932 -1.4855 6.4251 15 1 10.0475 -3.9082 6.3279 16 1 10.4859 -2.6221 4.3193 17 7 2.0183 -0.6905 -1.1962 18 6 2.1469 -0.0181 -2.3572 19 8 1.8538 1.1574 -2.4128 20 6 2.6498 -0.7283 -3.5875 21 6 2.7005 0.2547 -4.7589 22 6 3.2116 -0.4661 -6.0079 23 6 4.5405 0.0053 -6.6016 24 6 3.2263 0.3195 -7.3207 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9994 -1.0727 0.4258 31 1 3.8532 0.4370 1.3572 32 1 3.6404 -0.8760 3.4505 33 1 3.7866 -2.3853 2.5183 34 1 6.0346 -1.6853 1.7393 35 1 5.8876 -0.1762 2.6716 36 1 5.4609 -2.3503 4.4233 37 1 7.3655 -3.6549 6.8313 38 1 2.2490 -1.6317 -1.1527 39 1 3.6491 -1.1201 -3.3980 40 1 1.9776 -1.5506 -3.8326 41 1 1.7010 0.6461 -4.9483 42 1 3.3724 1.0773 -4.5140 43 1 2.9862 -1.5313 -6.0613 44 1 5.0510 0.8288 -6.1021 45 1 5.1893 -0.7496 -7.0459 46 1 3.0110 -0.2289 -8.2378 47 1 2.8722 1.3501 -7.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169873524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = -61.158116 kcal Electronic energy + Delta-G solvation = -21410.818211 eV Core-core repulsion = 18206.332081 eV Total energy + Delta-G solvation = -3204.486130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90904 -38.55312 -37.92635 -36.80445 -34.75885 -33.49023 -32.67518 -31.40442 -28.81936 -26.27735 -25.76280 -23.67853 -23.21253 -22.07723 -21.85754 -21.39198 -21.17484 -19.13047 -17.98333 -17.29094 -16.71269 -16.66594 -16.28496 -16.15596 -15.47338 -15.32178 -15.24154 -14.67728 -14.63445 -14.33997 -14.12731 -13.90397 -13.29329 -13.12487 -12.90984 -12.88923 -12.84353 -12.46238 -12.44031 -12.28724 -12.21275 -12.15553 -12.11440 -11.88582 -11.80750 -11.49293 -11.38988 -11.20911 -10.94612 -10.81807 -10.69119 -10.01355 -9.02287 -7.97205 -5.26550 1.46289 1.48568 1.57099 1.72075 2.29531 2.54867 2.92754 3.36018 3.59501 3.73495 3.85322 4.03109 4.05624 4.06128 4.09794 4.15487 4.33010 4.36706 4.41961 4.45692 4.59665 4.62515 4.64808 4.76913 4.81262 4.82370 4.87931 4.93995 4.99177 5.02016 5.06546 5.07612 5.14706 5.16232 5.26652 5.28239 5.32396 5.44211 5.45472 5.46961 5.52786 5.64935 6.25740 6.64428 7.31335 7.34690 8.07998 8.31474 9.26389 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002525 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.919225 B =11088.453382 C =12623.719200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.063 0.937 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.269 1.269 17 N -0.715 5.715 18 C 0.507 3.493 19 O -0.591 6.591 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.154 4.154 23 C -0.186 4.186 24 C -0.185 4.185 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.012 0.988 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.414 0.586 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 3.099 -23.720 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.213 1.213 15 H -0.219 1.219 16 H -0.194 1.194 17 N -0.367 5.367 18 C 0.295 3.705 19 O -0.471 6.471 20 C -0.171 4.171 21 C -0.108 4.108 22 C -0.172 4.172 23 C -0.223 4.223 24 C -0.222 4.222 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.030 0.970 36 H 0.206 0.794 37 H 0.061 0.939 38 H 0.251 0.749 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.963 3.968 -23.793 27.872 hybrid contribution 0.941 -0.383 0.825 1.308 sum -13.023 3.585 -22.969 26.646 Atomic orbital electron populations 1.22103 0.94529 1.02799 1.02020 1.20919 0.94363 0.96596 0.84378 0.91879 1.21833 0.94704 1.01980 0.96868 1.21419 0.95821 1.00017 0.96990 1.21600 0.93725 1.00975 0.98710 1.20862 0.94265 0.94211 0.88513 1.42638 1.04554 1.65301 1.26721 1.19654 0.85334 1.27660 1.05524 0.90872 1.25629 1.02352 1.01175 0.97843 1.69818 1.34726 1.41817 1.15635 0.85098 0.79757 0.76729 0.77929 1.21343 1.21855 1.19401 1.46118 1.66701 1.14721 1.09207 1.21302 0.76512 0.86910 0.85731 1.90677 1.52193 1.18370 1.85888 1.21691 1.04591 0.99786 0.91042 1.20826 1.01091 0.96831 0.92079 1.22371 1.01165 1.00156 0.93467 1.23121 0.90964 1.03752 1.04499 1.23047 1.01571 1.01316 0.96247 0.90816 0.93959 0.91064 0.89837 0.89689 0.91387 0.92865 0.92554 0.91755 0.96311 0.97021 0.79408 0.93886 0.74916 0.87124 0.86219 0.92216 0.93118 0.86085 0.89486 0.87868 0.87669 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.14 2.61 2.57 44.99 0.12 2.72 16 3 H 0.06 1.50 7.58 -2.38 -0.02 1.48 16 4 C -0.12 -2.02 4.75 30.59 0.15 -1.87 16 5 C -0.10 -2.40 5.10 30.60 0.16 -2.24 16 6 C -0.11 -3.43 5.33 30.60 0.16 -3.26 16 7 C 0.15 6.02 6.26 86.38 0.54 6.56 16 8 N -0.75 -39.33 5.60 -343.45 -1.92 -41.25 16 9 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 12 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 13 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 17 N -0.72 -11.53 4.53 -442.54 -2.00 -13.54 16 18 C 0.51 10.12 7.79 87.65 0.68 10.81 16 19 O -0.59 -17.25 15.65 -3.01 -0.05 -17.29 16 20 C -0.13 -1.69 5.66 29.85 0.17 -1.52 16 21 C -0.07 -1.12 4.79 30.59 0.15 -0.97 16 22 C -0.15 -1.91 5.73 -10.80 -0.06 -1.97 16 23 C -0.19 -2.40 10.18 30.62 0.31 -2.09 16 24 C -0.18 -2.29 10.25 30.62 0.31 -1.98 16 25 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.47 7.75 -2.39 -0.02 1.45 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.37 20.61 7.67 -92.71 -0.71 19.90 16 37 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 38 H 0.41 4.46 8.60 -92.71 -0.80 3.67 16 39 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 42 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 43 H 0.12 1.12 8.08 -2.39 -0.02 1.10 16 44 H 0.09 1.25 8.03 -2.39 -0.02 1.23 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.11 385.02 2.42 -69.69 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.59 Total: 28.79 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.67 Total: -15.30 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -3.65 Total: -114.51 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.05 Total: -17.29 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.11 2.42 -69.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169873524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.529 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds