Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 5 5 C 1.53000 * 109.47152 * 174.99646 * 4 2 1 6 6 C 1.53000 * 109.47214 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47214 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47067 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99988 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00312 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00089 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00205 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46911 * 60.00266 * 13 11 9 15 15 H 1.48505 * 109.47217 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47300 * 299.99949 * 13 11 9 17 17 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 18 18 C 1.34777 * 120.00266 * 275.00721 * 17 2 1 19 19 O 1.21274 * 120.00135 * 0.27234 * 18 17 2 20 20 C 1.50706 * 119.99766 * 179.97438 * 18 17 2 21 21 C 1.52999 * 109.46573 * 179.97438 * 20 18 17 22 22 C 1.53782 * 113.61793 * 274.13330 * 21 20 18 23 23 C 1.53946 * 87.02248 * 220.05336 * 22 21 20 24 24 C 1.53783 * 87.11399 * 25.36183 * 23 22 21 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47048 * 294.99635 * 4 2 1 29 29 H 1.08994 * 109.47690 * 54.99455 * 4 2 1 30 30 H 1.08995 * 109.47311 * 299.99637 * 5 4 2 31 31 H 1.09004 * 109.46980 * 59.99944 * 5 4 2 32 32 H 1.09003 * 109.47442 * 300.00268 * 6 5 4 33 33 H 1.09004 * 109.46768 * 60.00335 * 6 5 4 34 34 H 1.09003 * 109.47135 * 300.00455 * 7 6 5 35 35 H 1.08994 * 109.47015 * 60.00450 * 7 6 5 36 36 H 0.96996 * 120.00448 * 359.97438 * 8 7 6 37 37 H 0.96997 * 120.00243 * 179.97438 * 12 11 9 38 38 H 0.96999 * 119.99691 * 94.99706 * 17 2 1 39 39 H 1.09000 * 109.47161 * 299.99737 * 20 18 17 40 40 H 1.09001 * 109.46740 * 59.99879 * 20 18 17 41 41 H 1.09000 * 112.85372 * 45.34105 * 21 20 18 42 42 H 1.08997 * 113.61242 * 334.57563 * 22 21 20 43 43 H 1.08998 * 113.61192 * 105.47295 * 22 21 20 44 44 H 1.09007 * 113.53934 * 270.81116 * 23 22 21 45 45 H 1.09003 * 113.66908 * 139.93383 * 23 22 21 46 46 H 1.08995 * 113.61418 * 220.09096 * 24 23 22 47 47 H 1.08995 * 113.68691 * 89.19633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 6 4.0749 -1.3347 -2.5627 7 6 5.5998 -1.2272 -2.6268 8 7 6.0881 -1.9177 -3.8231 9 6 7.4302 -1.9549 -4.0922 10 1 8.1288 -1.4748 -3.4228 11 6 7.8929 -2.6087 -5.2259 12 7 7.0416 -3.1925 -6.0425 13 14 9.7238 -2.6588 -5.5934 14 1 10.4346 -3.3311 -4.4764 15 1 9.9556 -3.4124 -6.8519 16 1 10.2365 -1.2733 -5.7440 17 7 2.0184 -0.6905 1.1961 18 6 2.1471 -0.0182 2.3571 19 8 1.8538 1.1572 2.4129 20 6 2.6490 -0.7288 3.5877 21 6 2.7010 0.2545 4.7587 22 6 4.0075 1.0628 4.8268 23 6 3.9498 0.8753 6.3537 24 6 3.1217 -0.3932 6.0886 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7714 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4372 -1.3574 31 1 3.9995 -1.0726 -0.4260 32 1 3.7866 -2.3850 -2.5187 33 1 3.6403 -0.8755 -3.4506 34 1 5.8885 -0.1770 -2.6706 35 1 6.0340 -1.6867 -1.7390 36 1 5.4609 -2.3493 -4.4241 37 1 7.3649 -3.6490 -6.8349 38 1 2.2491 -1.6317 1.1525 39 1 1.9761 -1.5507 3.8325 40 1 3.6481 -1.1213 3.3985 41 1 1.8034 0.8679 4.8366 42 1 4.8549 0.5634 4.3573 43 1 3.8966 2.0995 4.5088 44 1 3.3943 1.6597 6.8680 45 1 4.9208 0.6760 6.8072 46 1 2.2969 -0.5302 6.7878 47 1 3.7254 -1.2922 5.9647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170002097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = -42.892959 kcal Electronic energy + Delta-G solvation = -21740.764281 eV Core-core repulsion = 18537.070188 eV Total energy + Delta-G solvation = -3203.694093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27470 -38.68479 -36.85480 -35.22338 -33.24760 -31.91758 -30.63212 -29.78282 -27.43701 -25.85130 -24.48405 -23.87973 -22.14641 -20.95125 -20.69297 -20.52705 -19.61103 -17.23179 -16.99076 -16.49258 -15.90933 -15.29024 -15.07960 -14.70543 -14.67728 -14.04527 -13.92704 -13.61427 -13.21314 -13.14422 -12.93794 -12.72709 -12.69078 -12.36154 -12.13284 -11.75595 -11.73156 -11.43002 -11.25139 -10.98559 -10.90172 -10.78772 -10.69892 -10.57474 -10.45321 -10.42587 -10.29432 -10.00166 -9.84717 -9.65130 -9.17342 -8.84425 -6.89409 -5.74363 -3.02817 2.54896 3.04987 3.45367 3.49222 3.50666 4.26968 4.36611 4.43703 4.52705 4.60981 4.65160 4.79361 4.93447 5.00160 5.09206 5.20712 5.27181 5.29262 5.43200 5.45519 5.46817 5.49268 5.56129 5.62001 5.63398 5.66511 5.71461 5.80264 5.84278 5.92002 5.96902 6.01386 6.12023 6.24396 6.27097 6.31731 6.39602 6.43999 6.47814 6.90715 6.94701 7.38572 7.71281 8.12948 8.45139 9.55657 10.15021 10.49626 11.48728 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002643 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.468912 B =10592.156648 C =11913.268986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.725 5.725 18 C 0.514 3.486 19 O -0.541 6.541 20 C -0.134 4.134 21 C -0.094 4.094 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.139 4.139 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.400 0.600 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 4.569 22.188 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.377 5.377 18 C 0.300 3.700 19 O -0.418 6.418 20 C -0.174 4.174 21 C -0.112 4.112 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.176 4.176 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.234 0.766 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.887 5.450 22.220 26.763 hybrid contribution 0.939 -0.749 -0.591 1.339 sum -12.948 4.701 21.629 25.643 Atomic orbital electron populations 1.22166 0.95529 1.01973 1.02388 1.21019 0.93643 0.97717 0.84060 0.89477 1.21935 0.96855 1.00899 0.96785 1.21512 0.93981 1.01054 0.98600 1.21730 0.97241 1.00253 0.97135 1.20645 0.91015 0.95311 0.90527 1.42385 1.05320 1.64993 1.25206 1.19212 0.83926 1.28451 1.05453 0.91292 1.24751 0.97741 1.00989 0.97690 1.69652 1.32862 1.40848 1.15065 0.86251 0.85100 0.77487 0.77266 1.21278 1.21660 1.21261 1.46177 1.67585 1.14108 1.09863 1.20706 0.77249 0.87408 0.84615 1.90682 1.49890 1.16191 1.85075 1.21732 1.03168 0.99479 0.93049 1.22319 0.99421 0.96750 0.92740 1.22971 0.97273 1.01079 0.95901 1.22828 1.00329 0.98067 0.96868 1.22983 0.99938 0.97705 0.96994 0.92358 0.91615 0.92564 0.91395 0.90302 0.92036 0.92159 0.92146 0.92063 0.96594 0.96661 0.78349 0.93488 0.76582 0.88913 0.88738 0.88421 0.90252 0.91230 0.90315 0.91508 0.91551 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.39 2.57 -67.94 -0.17 1.21 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.38 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -2.01 5.33 -26.73 -0.14 -2.15 16 7 C 0.15 3.16 6.26 -4.04 -0.03 3.14 16 8 N -0.74 -19.32 5.60 -59.91 -0.34 -19.65 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.94 -28.80 13.06 55.49 0.72 -28.08 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.73 -6.54 4.53 -53.81 -0.24 -6.79 16 18 C 0.51 5.38 7.79 -10.98 -0.09 5.29 16 19 O -0.54 -7.72 15.45 5.56 0.09 -7.63 16 20 C -0.13 -1.01 5.52 -27.88 -0.15 -1.16 16 21 C -0.09 -0.77 3.11 -89.80 -0.28 -1.05 16 22 C -0.13 -1.17 7.65 -25.83 -0.20 -1.36 16 23 C -0.14 -1.03 8.09 -25.83 -0.21 -1.24 16 24 C -0.14 -0.92 7.65 -25.92 -0.20 -1.12 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.40 2.78 8.60 -40.82 -0.35 2.42 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16 41 H 0.10 0.95 7.73 -51.93 -0.40 0.55 16 42 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -33.21 379.80 -9.68 -42.89 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.99 Total: 5.89 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.62 Total: -10.09 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.15 Total: -54.52 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.21 -9.68 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170002097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.006 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds