Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.52999 * 109.46917 * 119.99965 * 2 1 3 5 5 C 1.53003 * 109.46919 * 185.00382 * 4 2 1 6 6 C 1.53005 * 109.47196 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46865 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.46658 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00099 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99880 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00568 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99786 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00367 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47373 * 59.99641 * 13 11 9 15 15 H 1.48504 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46645 * 299.99836 * 13 11 9 17 17 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 18 18 C 1.34780 * 119.99566 * 85.00262 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.53785 * 113.61570 * 274.13660 * 21 20 18 23 23 C 1.53956 * 87.02052 * 220.04627 * 22 21 20 24 24 C 1.53777 * 87.11087 * 25.36196 * 23 22 21 25 25 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 27 27 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 28 28 H 1.08997 * 109.47088 * 305.00137 * 4 2 1 29 29 H 1.08998 * 109.47567 * 65.00347 * 4 2 1 30 30 H 1.09006 * 109.46993 * 300.00092 * 5 4 2 31 31 H 1.08997 * 109.47548 * 59.99717 * 5 4 2 32 32 H 1.08997 * 109.46859 * 299.99785 * 6 5 4 33 33 H 1.08996 * 109.46789 * 59.99737 * 6 5 4 34 34 H 1.08994 * 109.46912 * 299.99893 * 7 6 5 35 35 H 1.08997 * 109.46975 * 60.00257 * 7 6 5 36 36 H 0.97002 * 120.00439 * 0.02562 * 8 7 6 37 37 H 0.96999 * 119.99699 * 179.97438 * 12 11 9 38 38 H 0.96995 * 120.00423 * 264.99567 * 17 2 1 39 39 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 40 40 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 41 41 H 1.09001 * 112.85054 * 45.33081 * 21 20 18 42 42 H 1.09000 * 113.61195 * 334.56762 * 22 21 20 43 43 H 1.09001 * 113.61520 * 105.46896 * 22 21 20 44 44 H 1.09005 * 113.53676 * 270.80967 * 23 22 21 45 45 H 1.08993 * 113.66514 * 139.93360 * 23 22 21 46 46 H 1.09011 * 113.61618 * 220.09268 * 24 23 22 47 47 H 1.09000 * 113.69499 * 89.19666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5627 7 6 5.5998 -1.2275 2.6268 8 7 6.0881 -1.9180 3.8229 9 6 7.4302 -1.9552 4.0921 10 1 8.1288 -1.4751 3.4228 11 6 7.8930 -2.6100 5.2252 12 7 7.0418 -3.1948 6.0412 13 14 9.7238 -2.6601 5.5928 14 1 10.2364 -1.2747 5.7446 15 1 9.9557 -3.4149 6.8505 16 1 10.4349 -3.3313 4.4750 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0182 -2.3571 19 8 1.8583 1.1584 -2.4117 20 6 2.6489 -0.7288 -3.5877 21 6 2.7000 0.2542 -4.7590 22 6 1.3657 0.3845 -5.5125 23 6 2.1943 0.4247 -6.8094 24 6 3.2808 -0.3522 -6.0474 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.9995 -1.0727 0.4260 31 1 3.8532 0.4370 1.3574 32 1 3.6403 -0.8759 3.4506 33 1 3.7866 -2.3852 2.5185 34 1 6.0340 -1.6868 1.7389 35 1 5.8884 -0.1773 2.6707 36 1 5.4608 -2.3496 4.4239 37 1 7.3652 -3.6526 6.8328 38 1 2.2491 -1.6317 -1.1526 39 1 3.6481 -1.1213 -3.3985 40 1 1.9760 -1.5506 -3.8326 41 1 3.1440 1.2122 -4.4886 42 1 0.7289 -0.4961 -5.4282 43 1 0.8351 1.3134 -5.3033 44 1 2.4991 1.4300 -7.1003 45 1 1.7496 -0.1380 -7.6302 46 1 4.2941 -0.0172 -6.2694 47 1 3.1698 -1.4348 -6.1089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170002099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = -42.873515 kcal Electronic energy + Delta-G solvation = -21677.940555 eV Core-core repulsion = 18474.247304 eV Total energy + Delta-G solvation = -3203.693250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27962 -38.70072 -36.85492 -35.22288 -33.24670 -31.91915 -30.63434 -29.78429 -27.43600 -25.88006 -24.48950 -23.88789 -22.14808 -20.95593 -20.69201 -20.52651 -19.62868 -17.23386 -16.99094 -16.54768 -15.78864 -15.38647 -15.14010 -14.70333 -14.62958 -13.99439 -13.97399 -13.59715 -13.26788 -13.13028 -12.93351 -12.75021 -12.72687 -12.33776 -12.14168 -11.77736 -11.71764 -11.44226 -11.24780 -10.99258 -10.91527 -10.78634 -10.69897 -10.60584 -10.47492 -10.42263 -10.29365 -10.00047 -9.84763 -9.64997 -9.17332 -8.84299 -6.89283 -5.74252 -3.02670 2.54804 3.04911 3.45464 3.49291 3.50782 4.25982 4.34703 4.41587 4.52313 4.57866 4.65251 4.81192 4.91916 5.00261 5.06032 5.18748 5.27150 5.32284 5.41583 5.43020 5.45839 5.47755 5.56204 5.60469 5.63232 5.64924 5.71459 5.78877 5.80443 5.91888 5.96597 5.99548 6.12123 6.23179 6.26237 6.31830 6.39697 6.44011 6.47952 6.90867 6.94856 7.38506 7.71402 8.12873 8.45245 9.55744 10.15133 10.49726 11.48807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.002463 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.548772 B =11365.687466 C =12459.065604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.725 5.725 18 C 0.514 3.486 19 O -0.541 6.541 20 C -0.134 4.134 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.139 4.139 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.400 0.600 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 4.317 -22.458 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.377 5.377 18 C 0.300 3.700 19 O -0.418 6.418 20 C -0.174 4.174 21 C -0.112 4.112 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.234 0.766 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.918 5.199 -22.490 27.484 hybrid contribution 0.938 -0.754 0.589 1.340 sum -13.980 4.445 -21.900 26.360 Atomic orbital electron populations 1.22168 0.95531 1.01965 1.02388 1.21020 0.93642 0.97717 0.84057 0.89472 1.21935 0.96858 1.00896 0.96782 1.21515 0.93978 1.01057 0.98608 1.21729 0.97238 1.00251 0.97132 1.20647 0.91019 0.95318 0.90534 1.42385 1.05322 1.64988 1.25209 1.19211 0.83924 1.28418 1.05469 0.91292 1.24756 0.97756 1.00992 0.97711 1.69654 1.32850 1.40763 1.15141 0.86247 0.85088 0.77482 0.77260 1.21262 1.21667 1.21282 1.46176 1.67592 1.14128 1.09835 1.20706 0.77290 0.87419 0.84564 1.90684 1.49942 1.16129 1.85082 1.21728 1.03144 0.99408 0.93143 1.22323 0.97797 0.99115 0.91993 1.22965 0.96271 1.02235 0.95705 1.22828 0.97686 1.00683 0.96880 1.22985 0.98758 0.99992 0.95918 0.92576 0.91612 0.92359 0.90303 0.91396 0.92148 0.92033 0.92067 0.92148 0.96647 0.96587 0.78348 0.93497 0.76580 0.88637 0.88997 0.88276 0.90501 0.91294 0.90246 0.91594 0.91383 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.38 16 5 C -0.11 -1.41 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -2.01 5.33 -26.73 -0.14 -2.15 16 7 C 0.15 3.16 6.26 -4.04 -0.03 3.13 16 8 N -0.74 -19.32 5.60 -59.91 -0.34 -19.66 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.80 13.06 55.49 0.72 -28.07 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 N -0.73 -6.54 4.53 -53.81 -0.24 -6.78 16 18 C 0.51 5.38 7.79 -10.98 -0.09 5.29 16 19 O -0.54 -7.71 15.45 5.56 0.09 -7.63 16 20 C -0.13 -1.00 5.52 -27.88 -0.15 -1.16 16 21 C -0.09 -0.77 3.11 -89.81 -0.28 -1.05 16 22 C -0.13 -1.06 7.65 -25.82 -0.20 -1.26 16 23 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 24 C -0.14 -0.92 7.65 -25.92 -0.20 -1.12 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.40 2.77 8.60 -40.82 -0.35 2.42 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.53 7.87 -51.93 -0.41 0.12 16 41 H 0.10 1.00 7.73 -51.93 -0.40 0.60 16 42 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.08 0.47 8.10 -51.93 -0.42 0.04 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -33.21 379.81 -9.68 -42.89 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.99 Total: 5.72 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.62 Total: -9.94 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.15 Total: -54.51 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.21 -9.68 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170002099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.017 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds