Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.53001 * 109.46971 * 240.00216 * 2 1 3 5 5 C 1.52998 * 109.47127 * 174.99945 * 4 2 1 6 6 C 1.53003 * 109.47386 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47021 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46898 * 180.02562 * 7 6 5 9 9 C 1.36941 * 120.00271 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99282 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00174 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00184 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47143 * 59.99458 * 13 11 9 15 15 H 1.48494 * 109.47302 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46563 * 299.99821 * 13 11 9 17 17 N 1.46499 * 109.47086 * 120.00192 * 2 1 3 18 18 C 1.34777 * 119.99824 * 274.99727 * 17 2 1 19 19 O 1.21278 * 120.00191 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99991 * 180.02562 * 18 17 2 21 21 H 1.09002 * 109.47152 * 300.00060 * 20 18 17 22 22 C 1.53000 * 109.46912 * 60.00288 * 20 18 17 23 23 C 1.53002 * 109.46966 * 180.02562 * 20 18 17 24 24 C 1.53001 * 117.49910 * 128.62481 * 23 20 18 25 25 C 1.52994 * 117.50126 * 60.00166 * 23 20 18 26 26 H 1.09000 * 109.47324 * 60.00030 * 1 2 3 27 27 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47168 * 299.99838 * 1 2 3 29 29 H 1.08999 * 109.46893 * 294.99398 * 4 2 1 30 30 H 1.08997 * 109.47345 * 54.99738 * 4 2 1 31 31 H 1.08999 * 109.47066 * 300.00249 * 5 4 2 32 32 H 1.08997 * 109.47177 * 59.99690 * 5 4 2 33 33 H 1.08996 * 109.46957 * 300.00202 * 6 5 4 34 34 H 1.09006 * 109.46738 * 59.99718 * 6 5 4 35 35 H 1.09008 * 109.47148 * 299.99575 * 7 6 5 36 36 H 1.08997 * 109.47392 * 60.00061 * 7 6 5 37 37 H 0.97004 * 119.99804 * 359.97438 * 8 7 6 38 38 H 0.97009 * 120.00070 * 180.02562 * 12 11 9 39 39 H 0.96998 * 120.00082 * 95.00753 * 17 2 1 40 40 H 1.09004 * 109.46724 * 180.02562 * 22 20 18 41 41 H 1.09001 * 109.47194 * 299.99742 * 22 20 18 42 42 H 1.08992 * 109.47399 * 59.99914 * 22 20 18 43 43 H 1.09007 * 115.54675 * 274.32544 * 23 20 18 44 44 H 1.09004 * 117.49564 * 359.97438 * 24 23 20 45 45 H 1.08997 * 117.50086 * 145.01519 * 24 23 20 46 46 H 1.09000 * 117.49953 * 214.97795 * 25 23 20 47 47 H 1.09001 * 117.49780 * 359.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0748 -1.3350 -2.5627 7 6 5.5997 -1.2276 -2.6268 8 7 6.0880 -1.9181 -3.8230 9 6 7.4302 -1.9554 -4.0922 10 1 8.1286 -1.4753 -3.4228 11 6 7.8929 -2.6101 -5.2253 12 7 7.0416 -3.1956 -6.0407 13 14 9.7238 -2.6616 -5.5921 14 1 10.4339 -3.3335 -4.4743 15 1 9.9556 -3.4161 -6.8499 16 1 10.2373 -1.2764 -5.7433 17 7 2.0183 -0.6906 1.1961 18 6 2.1470 -0.0183 2.3571 19 8 1.8582 1.1583 2.4117 20 6 2.6499 -0.7286 3.5874 21 1 1.9777 -1.5509 3.8325 22 6 4.0527 -1.2785 3.3213 23 6 2.7007 0.2544 4.7588 24 6 2.0184 -0.1644 6.0626 25 6 1.3883 0.9169 5.1825 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8531 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 3.7865 -2.3852 -2.5186 34 1 3.6401 -0.8758 -3.4506 35 1 5.8884 -0.1773 -2.6707 36 1 6.0339 -1.6870 -1.7389 37 1 5.4606 -2.3496 -4.4240 38 1 7.3650 -3.6535 -6.8324 39 1 2.2491 -1.6318 1.1525 40 1 4.4162 -1.7926 4.2110 41 1 4.0161 -1.9789 2.4869 42 1 4.7248 -0.4562 3.0762 43 1 3.6118 0.8479 4.8353 44 1 1.5330 -1.1402 6.0857 45 1 2.4806 0.1533 6.9972 46 1 1.4360 1.9462 5.5382 47 1 0.4888 0.6528 4.6265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170020096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = -35.094541 kcal Electronic energy + Delta-G solvation = -22040.652611 eV Core-core repulsion = 18837.296683 eV Total energy + Delta-G solvation = -3203.355929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34442 -37.81155 -36.57360 -35.20302 -33.46366 -32.74647 -31.06470 -30.07689 -27.43654 -25.13509 -24.20138 -22.69788 -22.49974 -21.70594 -20.76713 -20.60190 -19.98039 -17.27908 -16.98268 -16.57899 -15.65779 -15.27406 -15.04623 -14.70811 -14.46498 -14.20950 -13.92963 -13.49703 -13.14746 -12.99086 -12.94992 -12.81573 -12.55061 -12.35630 -12.03558 -11.77935 -11.75097 -11.42225 -11.35830 -11.21817 -10.98040 -10.78631 -10.69845 -10.64656 -10.42469 -10.31514 -10.28989 -9.99854 -9.69196 -9.64575 -9.15838 -8.84303 -6.89255 -5.74275 -3.02700 2.55004 2.96352 3.45414 3.49288 3.50737 3.68091 4.25195 4.46548 4.55852 4.60204 4.67388 4.81680 4.88130 4.97394 5.00320 5.00792 5.21815 5.27102 5.39054 5.43011 5.46549 5.47524 5.55951 5.59336 5.64717 5.71103 5.72156 5.79893 5.81302 5.89186 5.92488 5.97016 6.01432 6.12117 6.25712 6.31957 6.39758 6.44324 6.48043 6.90885 6.94876 7.39174 7.71430 8.13943 8.45216 9.55745 10.15135 10.49712 11.48790 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.002658 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.460398 B =10532.360726 C =11453.176139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.724 5.724 18 C 0.517 3.483 19 O -0.534 6.534 20 C -0.081 4.081 21 H 0.094 0.906 22 C -0.143 4.143 23 C -0.134 4.134 24 C -0.185 4.185 25 C -0.156 4.156 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.399 0.601 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 4.078 21.423 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.376 5.376 18 C 0.303 3.697 19 O -0.410 6.410 20 C -0.103 4.103 21 H 0.112 0.888 22 C -0.200 4.200 23 C -0.153 4.153 24 C -0.222 4.222 25 C -0.193 4.193 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.699 4.964 21.450 26.473 hybrid contribution 0.936 -0.707 -0.546 1.294 sum -13.763 4.257 20.904 25.387 Atomic orbital electron populations 1.22168 0.95550 1.01955 1.02380 1.21019 0.93612 0.97725 0.84015 0.89448 1.21935 0.96874 1.00887 0.96778 1.21512 0.93968 1.01060 0.98602 1.21729 0.97243 1.00248 0.97137 1.20644 0.91009 0.95304 0.90528 1.42388 1.05316 1.64991 1.25208 1.19209 0.83925 1.28426 1.05461 0.91293 1.24749 0.97735 1.00981 0.97711 1.69655 1.32858 1.40740 1.15166 0.86251 0.85112 0.77486 0.77265 1.21279 1.21666 1.21262 1.46152 1.67591 1.14099 1.09753 1.20602 0.77259 0.87404 0.84446 1.90691 1.49525 1.15877 1.84887 1.20915 0.99167 0.97816 0.92365 0.88754 1.21760 0.94310 1.01445 1.02511 1.21940 0.98036 1.01407 0.93868 1.23093 1.04586 0.99998 0.94482 1.22761 0.96623 0.97579 1.02347 0.91608 0.92584 0.92375 0.91414 0.90297 0.92034 0.92134 0.92154 0.92074 0.96605 0.96649 0.78354 0.93494 0.76640 0.91257 0.91782 0.91762 0.87503 0.88960 0.88793 0.88905 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.38 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.53 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 7 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 8 N -0.74 -19.27 5.60 -59.91 -0.34 -19.61 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.94 -28.78 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.72 -6.58 4.42 -53.81 -0.24 -6.82 16 18 C 0.52 5.50 6.99 -10.98 -0.08 5.42 16 19 O -0.53 -7.58 14.74 5.56 0.08 -7.50 16 20 C -0.08 -0.66 2.88 -91.77 -0.26 -0.92 16 21 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 22 C -0.14 -1.04 9.07 37.16 0.34 -0.70 16 23 C -0.13 -1.16 4.73 -90.62 -0.43 -1.59 16 24 C -0.18 -1.32 10.18 -26.73 -0.27 -1.59 16 25 C -0.16 -1.40 8.97 -26.74 -0.24 -1.64 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.40 2.87 8.02 -40.82 -0.33 2.54 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 44 H 0.09 0.57 8.05 -51.93 -0.42 0.16 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -33.01 381.38 -9.45 -42.46 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.96 Total: 6.50 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.44 Total: -10.44 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.15 Total: -54.48 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.01 -9.45 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170020096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.365 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds