Wall clock time and date at job start Tue Mar 31 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 H 1.08995 * 109.47013 * 324.72129 * 7 6 4 9 9 C 1.52999 * 109.47257 * 84.72116 * 7 6 4 10 10 C 1.53004 * 109.47065 * 204.72115 * 7 6 4 11 11 C 1.53003 * 109.46807 * 64.99542 * 10 7 6 12 12 C 1.53004 * 109.46807 * 179.97438 * 11 10 7 13 13 C 1.52999 * 109.46906 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47120 * 180.02562 * 13 12 11 15 15 C 1.36932 * 120.00302 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00497 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99667 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00402 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46906 * 60.00060 * 19 17 15 21 21 H 1.48496 * 109.47157 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46908 * 300.00205 * 19 17 15 23 23 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 24 24 C 1.53000 * 117.50540 * 128.61949 * 23 2 1 25 25 C 1.53005 * 60.00165 * 252.51240 * 24 23 2 26 26 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 28 28 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 30 30 H 1.08995 * 109.47098 * 60.00065 * 9 7 6 31 31 H 1.09003 * 109.47054 * 179.97438 * 9 7 6 32 32 H 1.08996 * 109.47245 * 299.99926 * 9 7 6 33 33 H 1.08993 * 109.47108 * 184.99578 * 10 7 6 34 34 H 1.08998 * 109.47048 * 305.00090 * 10 7 6 35 35 H 1.08988 * 109.47304 * 300.00405 * 11 10 7 36 36 H 1.08998 * 109.46869 * 60.00439 * 11 10 7 37 37 H 1.09002 * 109.47337 * 300.00120 * 12 11 10 38 38 H 1.08998 * 109.47048 * 60.00548 * 12 11 10 39 39 H 1.09002 * 109.46788 * 299.99926 * 13 12 11 40 40 H 1.08998 * 109.47252 * 60.00143 * 13 12 11 41 41 H 0.97005 * 120.00133 * 359.97438 * 14 13 12 42 42 H 0.96996 * 120.00098 * 179.97438 * 18 17 15 43 43 H 1.09006 * 115.54905 * 274.33039 * 23 2 1 44 44 H 1.09008 * 117.49239 * 0.02562 * 24 23 2 45 45 H 1.08992 * 117.50269 * 145.01658 * 24 23 2 46 46 H 1.08998 * 117.49512 * 252.50715 * 25 24 23 47 47 H 1.08990 * 117.51790 * 107.47566 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 1 2.2366 -2.0101 3.4643 9 6 3.6038 -0.4298 3.9877 10 6 1.2605 -0.6548 4.8249 11 6 -0.1105 -1.2714 4.5404 12 6 -1.0499 -0.9899 5.7148 13 6 -2.4208 -1.6071 5.4306 14 7 -3.3205 -1.3371 6.5548 15 6 -4.6103 -1.7959 6.5251 16 1 -4.9644 -2.3566 5.6726 17 6 -5.4626 -1.5406 7.5905 18 7 -5.0308 -0.8578 8.6296 19 14 -7.2224 -2.1660 7.5496 20 1 -7.2189 -3.6469 7.4400 21 1 -7.9196 -1.7641 8.7976 22 1 -7.9272 -1.5845 6.3790 23 6 2.0401 -0.7212 -1.2491 24 6 3.0742 0.0051 -2.1117 25 6 1.6357 -0.1496 -2.6096 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 1.1493 0.5390 2.5436 30 1 3.5674 0.6435 4.1742 31 1 3.9707 -0.9407 4.8780 32 1 4.2732 -0.6307 3.1513 33 1 1.6738 -1.0916 5.7340 34 1 1.1546 0.4222 4.9549 35 1 -0.5237 -0.8347 3.6313 36 1 -0.0046 -2.3484 4.4104 37 1 -0.6365 -1.4271 6.6237 38 1 -1.1559 0.0870 5.8452 39 1 -2.8344 -1.1703 4.5216 40 1 -2.3145 -2.6840 5.3004 41 1 -3.0023 -0.8339 7.3206 42 1 -5.6265 -0.6790 9.3740 43 1 2.1268 -1.8045 -1.1641 44 1 3.3915 0.9967 -1.7888 45 1 3.8416 -0.6001 -2.5940 46 1 1.4569 -0.8567 -3.4196 47 1 1.0062 0.7401 -2.6145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170020097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:56 Heat of formation + Delta-G solvation = -36.558164 kcal Electronic energy + Delta-G solvation = -21962.634683 eV Core-core repulsion = 18759.215287 eV Total energy + Delta-G solvation = -3203.419396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33022 -37.90481 -36.71004 -35.22405 -33.41283 -32.66025 -31.03781 -30.06249 -27.43829 -25.43405 -24.22554 -22.64701 -22.51932 -21.62882 -20.77224 -20.61067 -19.84746 -17.58926 -16.99134 -16.60842 -15.48912 -15.36179 -15.05641 -14.69551 -14.47959 -14.05320 -13.93476 -13.52811 -13.24417 -13.14499 -12.94178 -12.87282 -12.51137 -12.39890 -12.19752 -11.76010 -11.74996 -11.43902 -11.27732 -11.20834 -10.98184 -10.78672 -10.70435 -10.64280 -10.42611 -10.31434 -10.28959 -9.99976 -9.80904 -9.65076 -9.18153 -8.84311 -6.89293 -5.74293 -3.02687 2.51998 2.97535 3.45400 3.49291 3.50724 3.54105 4.27762 4.38787 4.55001 4.59054 4.66697 4.76823 4.89805 4.93922 5.00071 5.10341 5.15082 5.26895 5.32340 5.42390 5.44127 5.46584 5.53963 5.56235 5.61447 5.65038 5.71285 5.80154 5.81093 5.87712 5.92387 5.96921 6.03493 6.11934 6.25312 6.31810 6.39653 6.43127 6.47923 6.90842 6.94828 7.36735 7.71420 8.10503 8.45220 9.55731 10.15133 10.49695 11.48802 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.002687 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.682306 B =10416.817531 C =11495.039832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.095 0.905 4 C 0.521 3.479 5 O -0.540 6.540 6 N -0.722 5.722 7 C 0.140 3.860 8 H 0.088 0.912 9 C -0.163 4.163 10 C -0.127 4.127 11 C -0.113 4.113 12 C -0.126 4.126 13 C 0.153 3.847 14 N -0.735 5.735 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.134 4.134 24 C -0.179 4.179 25 C -0.179 4.179 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.400 0.600 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.052 5.009 -18.187 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.113 0.887 4 C 0.307 3.693 5 O -0.416 6.416 6 N -0.374 5.374 7 C 0.036 3.964 8 H 0.106 0.894 9 C -0.221 4.221 10 C -0.165 4.165 11 C -0.152 4.152 12 C -0.164 4.164 13 C 0.025 3.975 14 N -0.379 5.379 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.212 4.212 18 N -0.584 5.584 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.152 4.152 24 C -0.216 4.216 25 C -0.215 4.215 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.234 0.766 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.399 4.205 -18.296 26.286 hybrid contribution -1.153 0.273 0.378 1.243 sum 17.247 4.478 -17.918 25.270 Atomic orbital electron populations 1.21771 0.92246 1.03297 1.02772 1.20873 0.97628 0.99794 0.91912 0.88735 1.20511 0.79783 0.84448 0.84562 1.90681 1.37862 1.26322 1.86761 1.46129 1.53535 1.32234 1.05527 1.21034 0.93093 0.98052 0.84233 0.89423 1.22172 0.96658 1.01344 1.01925 1.21936 0.95461 1.01728 0.97340 1.21514 0.93965 1.00851 0.98830 1.21730 0.95831 1.01084 0.97714 1.20644 0.88690 0.96608 0.91545 1.42386 1.09689 1.66476 1.19349 1.19209 0.87839 1.27866 1.02104 0.91293 1.24752 0.98487 1.01160 0.96783 1.69652 1.35584 1.44909 1.08279 0.86251 0.84719 0.78438 0.76704 1.21268 1.21667 1.21273 1.22043 1.03315 1.00148 0.89714 1.23004 0.92617 1.01793 1.04160 1.22978 0.98052 1.03299 0.97218 0.91669 0.91816 0.91317 0.76563 0.92554 0.91568 0.92336 0.90264 0.91391 0.92117 0.92026 0.92073 0.92146 0.96649 0.96599 0.78353 0.93493 0.86611 0.88977 0.88814 0.88690 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.93 37.16 0.33 -0.71 16 2 C -0.08 -0.66 2.88 -91.77 -0.26 -0.92 16 3 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 4 C 0.52 5.61 7.12 -10.98 -0.08 5.54 16 5 O -0.54 -7.87 15.31 5.55 0.09 -7.78 16 6 N -0.72 -6.59 4.42 -53.81 -0.24 -6.83 16 7 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 8 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 9 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 10 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 11 C -0.11 -1.39 5.10 -26.73 -0.14 -1.53 16 12 C -0.13 -1.99 5.33 -26.73 -0.14 -2.14 16 13 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 14 N -0.74 -19.26 5.60 -59.91 -0.34 -19.59 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 18 N -0.94 -28.76 13.06 55.49 0.72 -28.04 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 C -0.13 -1.17 4.76 -90.62 -0.43 -1.60 16 24 C -0.18 -1.35 10.18 -26.73 -0.27 -1.62 16 25 C -0.18 -1.23 9.74 -26.72 -0.26 -1.49 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 28 H 0.07 0.42 7.29 -51.93 -0.38 0.05 16 29 H 0.40 2.86 8.02 -40.82 -0.33 2.53 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.72 7.75 -51.94 -0.40 0.32 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.12 1.24 7.47 -51.93 -0.39 0.85 16 44 H 0.09 0.62 8.05 -51.92 -0.42 0.20 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.57 7.61 -51.93 -0.39 0.17 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -33.16 380.73 -9.38 -42.54 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.86 Total: 6.50 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.47 Total: -10.24 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.15 Total: -54.46 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.16 -9.38 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170020097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.984 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds