Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 H 1.08995 * 109.47013 * 324.72129 * 7 6 4 9 9 C 1.52999 * 109.47257 * 84.72116 * 7 6 4 10 10 C 1.53004 * 109.47065 * 204.72115 * 7 6 4 11 11 C 1.53003 * 109.46807 * 64.99542 * 10 7 6 12 12 C 1.53004 * 109.46807 * 179.97438 * 11 10 7 13 13 C 1.52999 * 109.46906 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47120 * 180.02562 * 13 12 11 15 15 C 1.36932 * 120.00302 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00497 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99667 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00402 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46906 * 60.00060 * 19 17 15 21 21 H 1.48496 * 109.47157 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46908 * 300.00205 * 19 17 15 23 23 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 24 24 C 1.53000 * 117.50540 * 128.61949 * 23 2 1 25 25 C 1.53005 * 60.00165 * 252.51240 * 24 23 2 26 26 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 28 28 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 30 30 H 1.08995 * 109.47098 * 60.00065 * 9 7 6 31 31 H 1.09003 * 109.47054 * 179.97438 * 9 7 6 32 32 H 1.08996 * 109.47245 * 299.99926 * 9 7 6 33 33 H 1.08993 * 109.47108 * 184.99578 * 10 7 6 34 34 H 1.08998 * 109.47048 * 305.00090 * 10 7 6 35 35 H 1.08988 * 109.47304 * 300.00405 * 11 10 7 36 36 H 1.08998 * 109.46869 * 60.00439 * 11 10 7 37 37 H 1.09002 * 109.47337 * 300.00120 * 12 11 10 38 38 H 1.08998 * 109.47048 * 60.00548 * 12 11 10 39 39 H 1.09002 * 109.46788 * 299.99926 * 13 12 11 40 40 H 1.08998 * 109.47252 * 60.00143 * 13 12 11 41 41 H 0.97005 * 120.00133 * 359.97438 * 14 13 12 42 42 H 0.96996 * 120.00098 * 179.97438 * 18 17 15 43 43 H 1.09006 * 115.54905 * 274.33039 * 23 2 1 44 44 H 1.09008 * 117.49239 * 0.02562 * 24 23 2 45 45 H 1.08992 * 117.50269 * 145.01658 * 24 23 2 46 46 H 1.08998 * 117.49512 * 252.50715 * 25 24 23 47 47 H 1.08990 * 117.51790 * 107.47566 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 1 2.2366 -2.0101 3.4643 9 6 3.6038 -0.4298 3.9877 10 6 1.2605 -0.6548 4.8249 11 6 -0.1105 -1.2714 4.5404 12 6 -1.0499 -0.9899 5.7148 13 6 -2.4208 -1.6071 5.4306 14 7 -3.3205 -1.3371 6.5548 15 6 -4.6103 -1.7959 6.5251 16 1 -4.9644 -2.3566 5.6726 17 6 -5.4626 -1.5406 7.5905 18 7 -5.0308 -0.8578 8.6296 19 14 -7.2224 -2.1660 7.5496 20 1 -7.2189 -3.6469 7.4400 21 1 -7.9196 -1.7641 8.7976 22 1 -7.9272 -1.5845 6.3790 23 6 2.0401 -0.7212 -1.2491 24 6 3.0742 0.0051 -2.1117 25 6 1.6357 -0.1496 -2.6096 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 1.1493 0.5390 2.5436 30 1 3.5674 0.6435 4.1742 31 1 3.9707 -0.9407 4.8780 32 1 4.2732 -0.6307 3.1513 33 1 1.6738 -1.0916 5.7340 34 1 1.1546 0.4222 4.9549 35 1 -0.5237 -0.8347 3.6313 36 1 -0.0046 -2.3484 4.4104 37 1 -0.6365 -1.4271 6.6237 38 1 -1.1559 0.0870 5.8452 39 1 -2.8344 -1.1703 4.5216 40 1 -2.3145 -2.6840 5.3004 41 1 -3.0023 -0.8339 7.3206 42 1 -5.6265 -0.6790 9.3740 43 1 2.1268 -1.8045 -1.1641 44 1 3.3915 0.9967 -1.7888 45 1 3.8416 -0.6001 -2.5940 46 1 1.4569 -0.8567 -3.4196 47 1 1.0062 0.7401 -2.6145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170020097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = -56.628601 kcal Electronic energy + Delta-G solvation = -21963.505003 eV Core-core repulsion = 18759.215287 eV Total energy + Delta-G solvation = -3204.289716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14434 -38.62609 -37.74481 -36.75894 -34.79925 -33.66757 -32.52844 -31.13788 -28.81634 -26.15847 -25.83700 -23.89503 -23.13476 -22.72000 -22.02600 -21.53831 -20.55118 -19.12844 -18.32949 -17.45756 -16.69353 -16.36948 -16.13986 -16.01682 -15.39035 -15.32064 -15.18952 -14.79079 -14.52755 -14.22190 -14.05743 -13.78612 -13.29897 -13.12437 -13.04461 -12.89791 -12.85614 -12.83390 -12.44980 -12.30355 -12.25479 -12.20085 -11.88960 -11.86803 -11.79092 -11.48687 -11.39467 -11.26868 -10.93303 -10.91727 -10.64502 -10.02360 -9.01932 -7.96724 -5.26111 1.46343 1.49884 1.56175 1.69517 2.23365 2.55264 2.94298 3.36365 3.58866 3.67162 3.75740 3.99773 4.04974 4.05831 4.13599 4.15420 4.34900 4.35553 4.41766 4.50271 4.52986 4.61056 4.64913 4.78119 4.79341 4.87351 4.88171 4.92737 4.98683 4.99431 5.02284 5.06241 5.15017 5.26213 5.26874 5.31065 5.32029 5.37217 5.45553 5.46001 5.53035 5.63655 6.26140 6.62309 7.31725 7.32271 8.08465 8.31921 9.26743 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.002687 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.682306 B =10416.817531 C =11495.039832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 H 0.118 0.882 4 C 0.516 3.484 5 O -0.585 6.585 6 N -0.713 5.713 7 C 0.143 3.857 8 H 0.063 0.937 9 C -0.156 4.156 10 C -0.116 4.116 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.149 3.851 14 N -0.749 5.749 15 C -0.251 4.251 16 H 0.073 0.927 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.976 3.024 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.276 1.276 23 C -0.154 4.154 24 C -0.180 4.180 25 C -0.164 4.164 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.412 0.588 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.011 0.989 41 H 0.374 0.626 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.841 6.297 -19.114 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.135 0.865 4 C 0.303 3.697 5 O -0.465 6.465 6 N -0.365 5.365 7 C 0.038 3.962 8 H 0.082 0.918 9 C -0.215 4.215 10 C -0.154 4.154 11 C -0.142 4.142 12 C -0.150 4.150 13 C 0.022 3.978 14 N -0.392 5.392 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.202 1.202 23 C -0.173 4.173 24 C -0.217 4.217 25 C -0.200 4.200 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.249 0.751 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.190 5.503 -19.253 27.052 hybrid contribution -1.044 -0.164 0.629 1.230 sum 17.146 5.339 -18.624 25.872 Atomic orbital electron populations 1.21779 0.91465 1.02512 1.04069 1.20870 0.98079 1.00308 0.90098 0.86450 1.21048 0.79048 0.83934 0.85632 1.90663 1.40011 1.28395 1.87406 1.46078 1.53144 1.32312 1.04970 1.20931 0.93873 0.96915 0.84461 0.91836 1.22106 0.95439 1.02338 1.01582 1.21835 0.93636 1.02549 0.97354 1.21417 0.94622 1.00674 0.97525 1.21601 0.93725 1.00743 0.98943 1.20851 0.90314 0.96651 0.89957 1.42629 1.09809 1.66283 1.20479 1.19620 0.89132 1.27405 1.02142 0.90893 1.25620 1.02767 1.01901 0.96599 1.69809 1.36904 1.46405 1.08905 0.85178 0.79616 0.78066 0.76712 1.20454 1.21864 1.20177 1.21968 1.05303 0.98862 0.91131 1.23092 0.92912 1.02048 1.03672 1.23056 0.97683 1.03525 0.95784 0.93468 0.90831 0.89706 0.75069 0.91053 0.90724 0.94004 0.89751 0.89682 0.91386 0.92886 0.92550 0.91742 0.96303 0.97084 0.79414 0.93868 0.89514 0.87797 0.89143 0.88408 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.93 71.98 0.64 -1.16 16 2 C -0.07 -1.08 2.88 -11.54 -0.03 -1.11 16 3 H 0.12 1.23 7.90 -2.39 -0.02 1.21 16 4 C 0.52 10.91 7.12 87.66 0.62 11.53 16 5 O -0.58 -17.63 15.31 -3.04 -0.05 -17.68 16 6 N -0.71 -12.01 4.42 -442.53 -1.96 -13.97 16 7 C 0.14 2.66 2.57 44.99 0.12 2.78 16 8 H 0.06 1.52 7.58 -2.39 -0.02 1.51 16 9 C -0.16 -2.60 9.48 71.98 0.68 -1.91 16 10 C -0.12 -2.03 4.75 30.60 0.15 -1.89 16 11 C -0.10 -2.40 5.10 30.60 0.16 -2.24 16 12 C -0.11 -3.42 5.33 30.60 0.16 -3.26 16 13 C 0.15 6.05 6.26 86.38 0.54 6.59 16 14 N -0.75 -39.29 5.60 -343.46 -1.92 -41.22 16 15 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 18 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 19 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.15 -2.64 4.76 -10.79 -0.05 -2.69 16 24 C -0.18 -2.52 10.18 30.60 0.31 -2.21 16 25 C -0.16 -2.00 9.74 30.60 0.30 -1.70 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 28 H 0.08 0.82 7.29 -2.39 -0.02 0.81 16 29 H 0.41 4.86 8.02 -92.71 -0.74 4.11 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.47 7.75 -2.39 -0.02 1.46 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.37 20.60 7.67 -92.70 -0.71 19.89 16 42 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.09 1.99 7.47 -2.38 -0.02 1.98 16 44 H 0.10 1.19 8.05 -2.38 -0.02 1.17 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.11 1.00 7.61 -2.39 -0.02 0.98 16 Total: -1.00 -71.86 380.73 2.76 -69.10 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.53 Total: 29.82 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.90 Total: -14.90 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -3.60 Total: -114.90 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -71.86 2.76 -69.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170020097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.473 kcal (2) G-P(sol) polarization free energy of solvation -71.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds