Wall clock time and date at job start Tue Mar 31 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47271 * 90.00229 * 13 11 9 15 15 H 1.48498 * 109.47371 * 210.00504 * 13 11 9 16 16 H 1.48506 * 109.46895 * 330.00403 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 22 22 C 1.53003 * 109.47343 * 60.00154 * 20 18 17 23 23 C 1.53005 * 109.46769 * 179.97438 * 20 18 17 24 24 C 1.53006 * 117.49733 * 128.62237 * 23 20 18 25 25 C 1.52997 * 117.50005 * 60.00106 * 23 20 18 26 26 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 27 27 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 29 29 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 30 30 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 31 31 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 32 32 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 33 33 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 34 34 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 35 35 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 36 36 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 37 37 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 38 38 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 39 39 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 40 40 H 1.09000 * 109.47253 * 59.99560 * 22 20 18 41 41 H 1.08997 * 109.47047 * 180.02562 * 22 20 18 42 42 H 1.09001 * 109.46723 * 299.99854 * 22 20 18 43 43 H 1.08998 * 115.54735 * 274.32846 * 23 20 18 44 44 H 1.09002 * 117.49479 * 359.97438 * 24 23 20 45 45 H 1.08994 * 117.49959 * 145.01674 * 24 23 20 46 46 H 1.08999 * 117.50131 * 214.97666 * 25 23 20 47 47 H 1.09004 * 117.49977 * 359.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.0927 -1.4808 6.4255 15 1 10.0467 -3.9035 6.3328 16 1 10.4855 -2.6213 4.3218 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 1 3.6494 -1.1205 -3.3977 22 6 1.7066 -1.8830 -3.9313 23 6 2.7009 0.2542 -4.7588 24 6 4.0100 0.3490 -5.5452 25 6 3.5957 1.4861 -4.6091 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.7516 -1.7713 1.2058 30 1 1.6053 -0.2615 2.1370 31 1 3.8530 0.4372 1.3574 32 1 3.9994 -1.0727 0.4262 33 1 3.6401 -0.8755 3.4507 34 1 3.7865 -2.3850 2.5188 35 1 6.0345 -1.6850 1.7398 36 1 5.8874 -0.1758 2.6719 37 1 5.4606 -2.3487 4.4245 38 1 7.3646 -3.6493 6.8350 39 1 2.2492 -1.6318 -1.1524 40 1 0.7073 -1.4913 -4.1210 41 1 2.0707 -2.3971 -4.8208 42 1 1.6700 -2.5833 -3.0968 43 1 1.7703 0.3725 -5.3138 44 1 4.8351 -0.2886 -5.2276 45 1 3.9408 0.5296 -6.6178 46 1 3.2541 2.4149 -5.0659 47 1 4.1480 1.5966 -3.6758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170020098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:58 Heat of formation + Delta-G solvation = -35.220210 kcal Electronic energy + Delta-G solvation = -22019.463467 eV Core-core repulsion = 18816.102089 eV Total energy + Delta-G solvation = -3203.361378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34212 -37.79981 -36.56653 -35.20699 -33.48397 -32.73596 -31.07199 -30.10141 -27.43721 -25.15520 -24.21394 -22.68546 -22.46666 -21.70969 -20.77664 -20.60626 -19.97799 -17.26437 -16.99807 -16.52177 -15.76463 -15.25448 -14.89766 -14.73812 -14.67801 -14.08495 -13.83053 -13.56771 -13.15967 -13.08687 -12.94015 -12.85207 -12.56278 -12.33535 -12.06478 -11.75787 -11.72419 -11.48186 -11.30875 -11.24392 -10.97618 -10.80615 -10.69920 -10.62202 -10.40853 -10.29752 -10.29428 -9.98221 -9.69489 -9.65325 -9.15624 -8.85067 -6.89568 -5.74761 -3.03178 2.55208 2.96431 3.44676 3.49460 3.51370 3.70612 4.25783 4.46459 4.54168 4.60876 4.67596 4.82417 4.92342 4.96593 4.97800 5.00354 5.18802 5.27155 5.39190 5.42605 5.45551 5.46635 5.55684 5.57033 5.63544 5.70414 5.71634 5.77199 5.80322 5.91364 5.93311 5.96920 6.02848 6.12134 6.25378 6.31465 6.39339 6.44248 6.47539 6.90458 6.94432 7.39169 7.71592 8.13957 8.44749 9.55390 10.14725 10.49287 11.48431 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002752 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.326834 B =10172.888946 C =11126.273971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.724 5.724 18 C 0.517 3.483 19 O -0.534 6.534 20 C -0.083 4.083 21 H 0.098 0.902 22 C -0.140 4.140 23 C -0.135 4.135 24 C -0.184 4.184 25 C -0.156 4.156 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.399 0.601 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 4.144 -21.399 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.376 5.376 18 C 0.303 3.697 19 O -0.410 6.410 20 C -0.105 4.105 21 H 0.116 0.884 22 C -0.198 4.198 23 C -0.154 4.154 24 C -0.221 4.221 25 C -0.193 4.193 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.409 5.028 -21.439 26.316 hybrid contribution 0.933 -0.699 0.563 1.295 sum -13.475 4.329 -20.876 25.222 Atomic orbital electron populations 1.22166 0.95520 1.01969 1.02377 1.21017 0.93649 0.97700 0.84001 0.89468 1.21936 0.96841 1.00904 0.96792 1.21512 0.93996 1.01047 0.98591 1.21731 0.97239 1.00258 0.97133 1.20644 0.91019 0.95307 0.90528 1.42393 1.05347 1.64957 1.25213 1.19258 0.83936 1.28347 1.05439 0.91236 1.24747 0.97747 1.00979 0.97703 1.69660 1.32796 1.40832 1.15131 0.86177 0.85069 0.77029 0.77871 1.21712 1.21751 1.20754 1.46153 1.67616 1.14094 1.09733 1.20593 0.77449 0.87306 0.84335 1.90691 1.49459 1.15888 1.84938 1.20926 1.01319 0.95980 0.92234 0.88436 1.21735 0.99080 0.96560 1.02385 1.21917 0.95356 0.99465 0.98637 1.23102 0.97741 1.03297 0.97984 1.22780 1.02680 0.92878 1.00920 0.92351 0.92567 0.91632 0.91401 0.90287 0.92034 0.92186 0.92061 0.92138 0.96663 0.96595 0.78352 0.93537 0.76641 0.92090 0.91253 0.91985 0.87686 0.88801 0.88833 0.88924 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.38 2.57 -67.94 -0.17 1.21 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.38 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.15 16 7 C 0.15 3.16 6.26 -4.05 -0.03 3.13 16 8 N -0.74 -19.30 5.60 -59.91 -0.34 -19.64 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.94 -28.81 13.06 55.49 0.72 -28.08 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 N -0.72 -6.58 4.42 -53.81 -0.24 -6.82 16 18 C 0.52 5.50 6.99 -10.98 -0.08 5.42 16 19 O -0.53 -7.58 14.74 5.56 0.08 -7.50 16 20 C -0.08 -0.67 2.88 -91.77 -0.26 -0.94 16 21 H 0.10 0.72 7.90 -51.93 -0.41 0.31 16 22 C -0.14 -0.86 9.07 37.16 0.34 -0.52 16 23 C -0.14 -1.17 4.72 -90.62 -0.43 -1.60 16 24 C -0.18 -1.41 10.18 -26.73 -0.27 -1.68 16 25 C -0.16 -1.49 8.97 -26.73 -0.24 -1.73 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.40 2.87 8.02 -40.82 -0.33 2.55 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 43 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -33.08 381.38 -9.45 -42.53 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.96 Total: 6.52 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.44 Total: -10.48 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.15 Total: -54.54 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.08 -9.45 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170020098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.315 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds