Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 C 1.52996 * 109.46846 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47201 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47560 * 180.02562 * 7 6 5 9 9 C 1.36939 * 120.00465 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99572 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00315 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00178 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00283 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47382 * 89.99190 * 13 11 9 15 15 H 1.48498 * 109.47432 * 209.99814 * 13 11 9 16 16 H 1.48508 * 109.46871 * 329.99565 * 13 11 9 17 17 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 18 18 C 1.34768 * 120.00056 * 275.00296 * 17 2 1 19 19 O 1.21278 * 120.00079 * 359.97438 * 18 17 2 20 20 C 1.50705 * 120.00177 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.46519 * 60.00292 * 20 18 17 22 22 C 1.52998 * 109.47239 * 300.00289 * 20 18 17 23 23 C 1.52997 * 109.47273 * 179.97438 * 20 18 17 24 24 C 1.53004 * 117.50142 * 248.62315 * 23 20 18 25 25 C 1.53005 * 60.00058 * 252.51232 * 24 23 20 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 30 30 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 31 31 H 1.08994 * 109.47518 * 299.99758 * 5 4 2 32 32 H 1.09001 * 109.47018 * 59.99856 * 5 4 2 33 33 H 1.08998 * 109.47611 * 299.99769 * 6 5 4 34 34 H 1.09001 * 109.47165 * 60.00270 * 6 5 4 35 35 H 1.09007 * 109.47221 * 300.00499 * 7 6 5 36 36 H 1.08997 * 109.47219 * 59.99756 * 7 6 5 37 37 H 0.97001 * 119.99753 * 0.02562 * 8 7 6 38 38 H 0.97000 * 120.00258 * 180.02562 * 12 11 9 39 39 H 0.97001 * 119.99547 * 95.00125 * 17 2 1 40 40 H 1.08998 * 109.46853 * 299.99540 * 22 20 18 41 41 H 1.08997 * 109.47149 * 59.99263 * 22 20 18 42 42 H 1.09000 * 109.46684 * 179.97438 * 22 20 18 43 43 H 1.08993 * 115.54917 * 34.33601 * 23 20 18 44 44 H 1.08996 * 117.49881 * 0.02562 * 24 23 20 45 45 H 1.09001 * 117.49900 * 145.02328 * 24 23 20 46 46 H 1.08999 * 117.49624 * 252.51201 * 25 24 23 47 47 H 1.08994 * 117.51479 * 107.47768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5627 7 6 5.5997 -1.2274 -2.6269 8 7 6.0881 -1.9179 -3.8231 9 6 7.4302 -1.9552 -4.0923 10 1 8.1287 -1.4751 -3.4229 11 6 7.8928 -2.6089 -5.2260 12 7 7.0416 -3.1936 -6.0421 13 14 9.7237 -2.6604 -5.5928 14 1 10.3222 -3.8623 -4.9584 15 1 9.9328 -2.7200 -7.0618 16 1 10.3718 -1.4395 -5.0498 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0184 2.3570 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5877 21 1 3.6481 -1.1213 3.3984 22 6 1.7046 -1.8825 3.9313 23 6 2.7011 0.2543 4.7587 24 6 4.0812 0.6529 5.2856 25 6 3.1883 -0.2788 6.1076 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.7517 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1371 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 3.7865 -2.3851 -2.5188 34 1 3.6402 -0.8756 -3.4506 35 1 5.8885 -0.1772 -2.6707 36 1 6.0340 -1.6869 -1.7390 37 1 5.4607 -2.3487 -4.4245 38 1 7.3649 -3.6508 -6.8341 39 1 2.2491 -1.6318 1.1525 40 1 0.7055 -1.4901 4.1205 41 1 1.6678 -2.5829 3.0969 42 1 2.0679 -2.3967 4.8211 43 1 1.9191 1.0134 4.7703 44 1 4.9519 0.2150 4.7977 45 1 4.2072 1.6746 5.6439 46 1 2.7270 0.1300 7.0066 47 1 3.4713 -1.3300 6.1607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170020099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -36.660253 kcal Electronic energy + Delta-G solvation = -21913.981854 eV Core-core repulsion = 18710.558031 eV Total energy + Delta-G solvation = -3203.423823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33248 -37.89980 -36.70774 -35.22730 -33.43051 -32.65413 -31.04459 -30.08936 -27.43896 -25.46004 -24.23464 -22.63626 -22.50589 -21.63174 -20.78030 -20.61322 -19.85416 -17.57462 -16.99994 -16.59835 -15.55952 -15.34958 -14.93059 -14.73627 -14.61255 -13.96353 -13.83886 -13.66598 -13.29818 -13.15028 -12.93560 -12.88303 -12.56479 -12.33444 -12.26933 -11.76010 -11.72645 -11.45290 -11.27825 -11.23070 -10.98504 -10.80070 -10.70625 -10.62875 -10.41044 -10.30774 -10.29308 -9.98329 -9.81022 -9.65587 -9.18531 -8.84978 -6.89450 -5.74684 -3.03078 2.52077 2.97317 3.44602 3.49461 3.51521 3.55480 4.27504 4.38163 4.54197 4.59921 4.66623 4.76526 4.91295 4.93137 4.99980 5.07157 5.13205 5.27000 5.32666 5.37738 5.42035 5.46212 5.53713 5.56095 5.62557 5.63811 5.71192 5.76624 5.80469 5.84152 5.92214 5.96620 6.02973 6.11801 6.25138 6.31564 6.39408 6.42966 6.47700 6.90636 6.94581 7.36691 7.71681 8.10448 8.44828 9.55457 10.14801 10.49371 11.48487 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002702 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.657748 B =10360.688749 C =11402.517437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.722 5.722 18 C 0.521 3.479 19 O -0.540 6.540 20 C -0.083 4.083 21 H 0.098 0.902 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.177 4.177 25 C -0.179 4.179 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.400 0.600 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 3.700 21.683 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 N -0.374 5.374 18 C 0.307 3.693 19 O -0.416 6.416 20 C -0.104 4.104 21 H 0.116 0.884 22 C -0.198 4.198 23 C -0.153 4.153 24 C -0.214 4.214 25 C -0.216 4.216 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.234 0.766 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.580 4.593 21.712 26.553 hybrid contribution 0.994 -0.694 -0.547 1.329 sum -13.586 3.900 21.165 25.451 Atomic orbital electron populations 1.22168 0.95472 1.02003 1.02404 1.21036 0.93683 0.97732 0.83976 0.89427 1.21937 0.96857 1.00904 0.96767 1.21513 0.93982 1.01080 0.98601 1.21728 0.97240 1.00253 0.97131 1.20646 0.91017 0.95316 0.90525 1.42393 1.05325 1.65011 1.25181 1.19256 0.83922 1.28372 1.05401 0.91238 1.24750 0.97744 1.01018 0.97690 1.69663 1.32765 1.40859 1.15130 0.86177 0.85098 0.77678 0.77189 1.21725 1.21747 1.20754 1.46127 1.67478 1.14107 1.09709 1.20495 0.77185 0.87186 0.84406 1.90680 1.49901 1.16042 1.85000 1.20882 1.01270 0.96003 0.92246 0.88427 1.21743 0.99338 0.96452 1.02287 1.22026 0.99152 1.01125 0.92983 1.23022 0.94048 1.00364 1.03992 1.22977 1.04365 0.99643 0.94649 0.92350 0.92531 0.91586 0.91382 0.90254 0.92008 0.92175 0.92143 0.92052 0.96589 0.96659 0.78353 0.93543 0.76563 0.91988 0.92018 0.91309 0.86714 0.88739 0.88752 0.88770 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.37 16 5 C -0.11 -1.41 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 7 C 0.15 3.16 6.26 -4.04 -0.03 3.13 16 8 N -0.74 -19.30 5.60 -59.91 -0.34 -19.64 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.80 13.06 55.49 0.72 -28.08 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 N -0.72 -6.59 4.42 -53.81 -0.24 -6.83 16 18 C 0.52 5.62 7.12 -10.99 -0.08 5.54 16 19 O -0.54 -7.87 15.31 5.56 0.09 -7.79 16 20 C -0.08 -0.67 2.88 -91.77 -0.26 -0.94 16 21 H 0.10 0.72 7.90 -51.93 -0.41 0.31 16 22 C -0.14 -0.86 8.93 37.16 0.33 -0.53 16 23 C -0.13 -1.18 4.76 -90.62 -0.43 -1.61 16 24 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 25 C -0.18 -1.24 9.74 -26.73 -0.26 -1.50 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.40 2.86 8.02 -40.82 -0.33 2.53 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.32 7.56 -51.93 -0.39 -0.08 16 42 H 0.07 0.36 7.29 -51.93 -0.38 -0.02 16 43 H 0.11 1.20 7.47 -51.93 -0.39 0.81 16 44 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.56 7.61 -51.93 -0.39 0.17 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -33.27 380.73 -9.38 -42.65 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.86 Total: 6.39 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.47 Total: -10.18 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.15 Total: -54.54 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.27 -9.38 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170020099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.993 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds